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Yoda T. Materials evaluation using cell-sized liposomes. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2024; 16:5509-5518. [PMID: 39109603 DOI: 10.1039/d4ay00803k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/16/2024]
Abstract
Cell membranes play a vital role in delineating the internal cellular environment from the external surroundings, going beyond mere compartmentalization. Researchers have delved into the structural organization, properties, and functional roles of biological membranes, paving the way for their application in substance identification, detection, and quantification. This review introduces various studies and their implications for future research. It underscores the advantages of employing cell-sized liposomes, which enable real-time observation for rapid detection and analysis of diverse materials. The utility of cell-sized liposomes extends to their size, dynamic shape changes, and phase-separation, offering valuable insights into the evaluation of targeted materials.
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Affiliation(s)
- Tsuyoshi Yoda
- Industrial Research Institute, Aomori Prefectural Industrial Technology Research Center, 221-10 Yamaguchi Nogi, Aomori City, Aomori, 030-0142, Japan.
- The United Graduate School of Agricultural Sciences, Iwate University, 3-18-8, Ueda, Morioka City, Iwate 020-8550, Japan
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2
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Yoda T. Direct Observation of Cell‐sized Liposomes Containing a Functional Polyphenol Procyanidin B2 from Apple. ChemistrySelect 2022. [DOI: 10.1002/slct.202201808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Tsuyoshi Yoda
- Hirosaki Industrial Research Institute Aomori Prefectural Industrial Technology Research Center 1-1-8 Ougi-machi Hirosaki City, Aomori 036-8104 Japan
- Hachinohe Industrial Research Institute Aomori Prefectural Industrial Technology Research Center 1-4-43 Kita-inter-kogyodanchi Hachinohe City, Aomori 039-2245 Japan
- The United Graduate School of Agricultural Sciences Iwate University 3-18-8, Ueda Morioka City, Iwate 020-8550 Japan
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Yoda T. Charged Lipids Influence Phase Separation in Cell-Sized Liposomes Containing Cholesterol or Ergosterol. MEMBRANES 2022; 12:membranes12111121. [PMID: 36363676 PMCID: PMC9697951 DOI: 10.3390/membranes12111121] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 11/06/2022] [Accepted: 11/07/2022] [Indexed: 05/14/2023]
Abstract
Positively charged ion species and charged lipids play specific roles in biochemical processes, especially those involving cell membranes. The cell membrane and phase separation domains are attractive research targets to study signal transduction. The phase separation structure and functions of cell-sized liposomes containing charged lipids and cholesterol have been investigated earlier, and the domain structure has also been studied in a membrane model, containing the yeast sterol ergosterol. The present study investigates phase-separated domain structure alterations in membranes containing charged lipids when cholesterol is substituted with ergosterol. This study finds that ergosterol increases the homogeneity of membranes containing charged lipids. Cholesterol-containing membranes are more sensitive to a charged state, and ergosterol-containing liposomes show lower responses to charged lipids. These findings may improve our understanding of the differences in both yeast and mammalian cells, as well as the interactions of proteins with lipids during signal transduction.
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Affiliation(s)
- Tsuyoshi Yoda
- Hachinohe Industrial Research Institute, Aomori Prefectural Industrial Technology Research Center, 1-4-43 Kita-inter-kogyodanchi, Hachinohe City 039-2245, Aomori, Japan; ; Tel.: +81-178-21-2100
- The United Graduate School of Agricultural Sciences, Iwate University, 3-18-8 Ueda, Morioka City 020-8550, Iwate, Japan
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Yoda T. The Flavonoid Molecule Procyanidin Reduces Phase Separation in Model Membranes. MEMBRANES 2022; 12:943. [PMID: 36295702 PMCID: PMC9609489 DOI: 10.3390/membranes12100943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 09/19/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Procyanidin extracted from fruits, such as apples, has been shown to improve lipid metabolization. Recently, studies have revealed that procyanidin interacts with lipid molecules in membranes to enhance lipid metabolism; however, direct evidence of the interaction between procyanidin and lipid membranes has not been demonstrated. In this study, the phase behaviors and changes in the membrane fluidity of cell-sized liposomes containing apple procyanidin, procyanidin B2 (PB2), were demonstrated for the first time. Phase separation in 1,2-Dioleoyl-sn-glycero-3-phosphocholine (DOPC)/1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC)/cholesterol ternary membranes significantly decreased after the addition of PB2. The prospect of applying procyanidin content measurements, using the results of this study, to commercial apple juice was also assessed. Specifically, the PB2 concentrations were 50%, 33%, and 0% for pure apple juice, 2-fold diluted apple juice, and pure water, respectively. The results of the actual juice were correlated with PB2 concentrations and phase-separated liposomes ratios, as well as with the results of experiments involving pure chemicals. In conclusion, the mechanism through which procyanidin improves lipid metabolism through the regulation of membrane fluidity was established.
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Affiliation(s)
- Tsuyoshi Yoda
- Hachinohe Industrial Research Institute, Aomori Prefectural Industrial Technology Research Center, 1-4-43 Kita-inter-kogyodanchi, Hachinohe City 039-2245, Japan; ; Tel.: +81-178-21-2100
- The United Graduate School of Agricultural Sciences, Iwate University, 3-18-8 Ueda, Morioka City 020-8550, Japan
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Yoda T. Phase Separation in Liposomes Determined by Ergosterol and Classified Using Machine Learning. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2022; 28:1-8. [PMID: 36117262 DOI: 10.1017/s1431927622012521] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Recent studies indicated that ergosterol (Erg) helps form strongly ordered lipid domains in membranes that depend on their chemical characters. However, direct evidence of concentration-dependent interaction of Erg with lipid membranes has not been reported. We studied the Erg concentration-dependent changes in the phase behaviors of membranes using cell-sized liposomes containing 1,2-Dioleoyl-sn-glycero-3-phosphocholine (DOPC)/1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC). We observed the concentration range of phase separation in ternary membranes was significantly wider when Erg rather than cholesterol (Chol) was used as the sterol component. We used machine learning for the first time to analyze microscopic images of cell-sized liposomes and identify phase-separated structures. The automated method was successful in identifying homogeneous membranes but performance remained data-limited for the identification of phase separation domains characterized by more complex features.
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Affiliation(s)
- Tsuyoshi Yoda
- Aomori Prefectural Industrial Technology Research Center, Hachinohe Industrial Research Institute, Hachinohe City, Aomori 039-2245, Japan
- The United Graduate School of Agricultural Sciences, Iwate University, Morioka City, Iwate 020-8550, Japan
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Yoda T. Quality Evaluation of Drinks Based on Liposome Shape Changes Induced by Flavor Molecules. ACS OMEGA 2022; 7:5679-5686. [PMID: 35224329 PMCID: PMC8867555 DOI: 10.1021/acsomega.1c04946] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Accepted: 01/27/2022] [Indexed: 05/27/2023]
Abstract
The flavors of ethyl caproate and isoamyl acetate and their precursors are crucial in sake brewing for fermentation and evaluation of the corresponding quality of drinks. However, the quality evaluation of drinks containing these flavors is challenging. Therefore, sake quality was evaluated via dynamic membrane transformation on cell-sized liposomes while adding flavor-containing solutions. Flavor varieties have been reported to influence dynamic shape change patterns. This study reports the observed difference in the dynamic shape change of each flavor. Based on these results, proper quality evaluation of drinks is expected.
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Affiliation(s)
- Tsuyoshi Yoda
- Aomori
Prefectural Industrial Technology Research Center, Hirosaki Industrial Research Institute, 1-1-8 Ougi-machi, Hirosaki
City, Aomori 036-8104, Japan
- Aomori
Prefectural Industrial Technology Research Center, Hachinohe Industrial Research Institute, 1-4-43 Kita-inter-kogyodanchi, Hachinohe City, Aomori 039-2245, Japan
- The
United Graduate School of Agricultural Sciences, Iwate University, 3-18-8,
Ueda, Morioka City, Iwate 020-8550, Japan
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Effects of isovaleraldehyde on cell-sized lipid bilayer vesicles. Biophys Chem 2021; 279:106698. [PMID: 34644672 DOI: 10.1016/j.bpc.2021.106698] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Accepted: 10/05/2021] [Indexed: 11/23/2022]
Abstract
Membrane composition and components are intrinsic properties of a cell membrane. Any changes in lipid vesicle composition or any stimuli, such as heat, that affect molecular packing induce dynamic shape change. Dynamic shape changes allow the determination of structural organization changes upon a change in the membrane internal or external environment. In this study, we report how thermal stress can affect isovaleraldehyde (IVA) flavor compound-containing membranes. We revealed that (1) IVA-containing lipid vesicles are large and their increasing size results in increasing IVA/vesicle concentration; (2) IVA-containing lipid vesicles are less thermo-responsive and are affected by increasing IVA concentration; finally, we discussed (3) the molecular mechanisms behind membrane packing. We proposed that the characteristic of IVA-containing membranes could be used in evaluating drink quality. Our results would potentially contribute to the development of membrane technology and the progress in further understanding physiological processes, such as flavor sensation.
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Yoda T, Saito T. Size of Cells and Physicochemical Properties of Membranes are Related to Flavor Production during Sake Brewing in the Yeast Saccharomyces cerevisiae. MEMBRANES 2020; 10:membranes10120440. [PMID: 33352892 PMCID: PMC7766171 DOI: 10.3390/membranes10120440] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/25/2020] [Revised: 12/15/2020] [Accepted: 12/16/2020] [Indexed: 12/17/2022]
Abstract
Ethyl caproate (EC) and isoamyl acetate (IA) are key flavor components of sake. Recently, attempts have been made to increase the content of good flavor components, such as EC and IA, in sake brewing. However, the functions of EC and IA in yeast cells remain poorly understood. Therefore, we investigated the effects of EC and IA using cell-sized lipid vesicles. We also investigated lipid vesicles containing EC and/or caproic acid (CA) as well as IA and/or isoamyl alcohol (IAA). CA and IAA are precursors of EC and IA, respectively, and are important flavors in sake brewing. The size of a vesicle is influenced by flavor compounds and their precursors in a concentration-dependent manner. We aimed to establish the conditions in which the vesicles contained more flavors simultaneously and with different ratios. Interestingly, vesicles were largest in a mixture of 50% of 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) with 25% EC and 25% CA or a mixture of 50% DOPC with 25% IA and 25% IAA. The impact of flavor additives on membrane fluidity was also studied using Laurdan generalized polarization. During the production process, flavors may regulate the fluidity of lipid membranes.
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Affiliation(s)
- Tsuyoshi Yoda
- Aomori Prefectural Industrial Technology Research Center, Hirosaki Industrial Research Institute, 1-1-8 Ougi-machi, Hirosaki, Aomori 036-8104, Japan;
- The United Graduate School of Agricultural Sciences, Iwate University, 3-18-8, Ueda, Morioka 020-8550, Japan
- Correspondence: ; Tel.: +81-172-55-6740
| | - Tomoaki Saito
- Aomori Prefectural Industrial Technology Research Center, Hirosaki Industrial Research Institute, 1-1-8 Ougi-machi, Hirosaki, Aomori 036-8104, Japan;
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Yoda T, Ogura A, Saito T. Influence of Ethyl Caproate on the Size of Lipid Vesicles and Yeast Cells. Biomimetics (Basel) 2020; 5:biomimetics5020016. [PMID: 32349293 PMCID: PMC7344887 DOI: 10.3390/biomimetics5020016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/22/2020] [Accepted: 04/23/2020] [Indexed: 11/16/2022] Open
Abstract
Ethyl caproate (EC) is a key flavor component of sake. Recently, in sake brewing, an effort has been underway to increase the content of aromatic components such as EC. However, the function of EC in yeast cells remains poorly understood. Therefore, we investigated the effects of EC using cell-sized lipid vesicles. We found that vesicle size decreases in a concentration-dependent manner when EC is contained in lipid vesicles. Furthermore, yeast experiments showed that a strain producing high quantities of EC in its stationary phase decreased in size during EC production. Given caproic acid's (CA) status as the esterification precursor of EC in yeast, we also compared lipid vesicles containing CA with those containing EC. We found that CA vesicles were smaller than EC vesicles of the same concentration. These results suggest that EC production may function apparently to maintain cell size.
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Phan HTT, Yoda T, Chahal B, Morita M, Takagi M, Vestergaard MC. Structure-dependent interactions of polyphenols with a biomimetic membrane system. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2014; 1838:2670-7. [PMID: 25016053 DOI: 10.1016/j.bbamem.2014.07.001] [Citation(s) in RCA: 87] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2014] [Revised: 06/13/2014] [Accepted: 07/01/2014] [Indexed: 02/05/2023]
Abstract
Polyphenols are naturally-occurring compounds, reported to be biologically active, and through their interactions with cell membranes. Although association of the polyphenols with the bilayer has been reported, the detailed mechanism of interaction is not yet well elucidated. We report on spatio-temporal real-time membrane dynamics observed in the presence of polyphenols. Two distinct membrane dynamics, corresponding to the two classes of polyphenols used, were observed. Flavonoids (epi-gallocatechin-3-gallate, gallocatechin, theaflavin and theaflavin-3-gallate) caused lipid membrane aggregation and rigidification. As simple structural modification through opening of the aromatic C-ring into an olefin bond, present in trans-stilbenes (resveratrol and picead), completely changed the membrane properties, increasing fluidity and inducing fluctuation. There were differences in the membrane transformations within the same class of polyphenols. Structure-dependent classification of membrane dynamics may contribute to a better understanding of the physicochemical mechanism involved in the bioactivity of polyphenols. In general, an increase in the number of hydrophilic side chains (galloyl, hydroxyl, glucoside, gallate) increased the reactivity of the polyphenols. Most notable was the difference observed through a simple addition of the gallate group. Unraveling the importance of these polyphenols, at a functional group level further opens the key to tailored design of bioactive compounds as potential drug candidates.
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Affiliation(s)
- Huong T T Phan
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan
| | - Tsuyoshi Yoda
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan
| | - Bindu Chahal
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan; M. Tech. Chemical Synthesis and Process Technologies, Department of Chemistry, University of Delhi, Delhi 110007, India
| | - Masamune Morita
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan
| | - Masahiro Takagi
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan
| | - Mun'delanji C Vestergaard
- School of Materials Science, Japan Advanced Institute of Science and Technology, 1-1 Asahidai, Nomi City, Ishikawa 923-1292, Japan.
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Phan HT, Hata T, Morita M, Yoda T, Hamada T, Vestergaard MC, Takagi M. The effect of oxysterols on the interaction of Alzheimer's amyloid beta with model membranes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2013; 1828:2487-95. [DOI: 10.1016/j.bbamem.2013.06.021] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 06/11/2013] [Accepted: 06/17/2013] [Indexed: 01/09/2023]
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