Influence of calcium sources on microbially induced calcium carbonate precipitation by Bacillus sp. CR2

Biomineralization Process of CaCO3 Precipitation Induced by Bacillus mucilaginous and Its Potential Application in Microbial Self-healing Concrete

Microbial induced calcium carbonate precipitation (MICP) is widely common in nature, which belongs to biomineralization and has been explored carefully in recent decades. The paper studied the effect of temperature, initial pH value and Ca2+ concentration on bacterial growth and carbonic anhydrase activity, and then revealed the biomineralization process through the changes of Ca2+ concentration and calcification rate in alkali environment. Meanwhile, microbial healing agent containing spores and calcium nitrate was prepared and used for the early age concrete cracks repair. The self-healing efficiency was assessed by crack closure rate and water permeability repair rate. The experimental results showed that when the optimal temperature was 30 °C, the pH was 8.0-11.0, and the optimal Ca2+ concentration was 0-90 mM, the bacteria could grow better and the carbonic anhydrase activity was higher. Compared with reference, the crack closure rate with the crack width up to 0.339 mm could reach 95.62% and the water permeability repair rate was 87.54% after 28 d healing time of dry-wet cycles. XRD analysis showed that the precipitates at the crack mouth were calcite CaCO3. Meanwhile, the self-healing mechanism of mortar cracks was discussed in detail. In particular, there is no other pollution in the whole mineralization process, and the self-healing system is environmentally friendly, which provides a novel idea and method for the application of microbial self-healing concrete.

Sustainable building materials-recycled aggregate and concrete: a systematic review of properties, modification techniques, and environmental impacts

Resource utilization of construction and demolition (C&D) waste has great potential to significantly reduce the consumption of natural resources and improve the environment. Meanwhile, establishing a sound policy system and reducing production are the key ways to solve the problem of C&D waste. Numerous studies on C&D waste, recycled concrete aggregate (RA), and recycled aggregate concrete (RAC) have been reported in the literature, with few systematic summaries. From a global perspective, this paper assessed the current situation of C&D waste and the countermeasure of several major economies. Then, this paper systematically introduces the composition structure and characteristics of RA. Modification techniques from macro and micro perspectives of RA and its effect on RAC were also presented. Paper also reviews the environmental impacts of RA and RAC. The results showed that bonded mortar was the most significant defect of RA than natural aggregate (NA). Thus, RA weakened RAC's microstructure, workability, mechanical properties, and durability. The research on the modification of RA mainly focused on removing bonded mortar and enhancing bonded mortar containing physical or chemical methods. Enhancing bonded mortar was a more effective method than removing bonded mortar. Carbonation and microbially induced calcium carbonate precipitation were highly efficient and environmentally friendly for RA modification. Research progress in quantifying the environmental impacts associated with concrete from waste materials through the LCA methodology is presented. Suggestions and an outlook were given on the critical issues facing RA and RAC. We expect that this work can provide more technical support for C&D waste utilization.

Microbial Biomineralization of Alkaline Earth Metal Carbonates on 3D-Printed Surfaces

The biomineralizing bacterium Sporosarcina pasteurii has attracted considerable interest in the area of geotechnical engineering due to its ability to induce extracellular mineralization. The presented study investigated S. pasteurii's potential to induce the mineralization of alkali-earth metal carbonate coatings on different polymeric 3D-printed flat surfaces fabricated by different additive manufacturing methods. The use of calcium, barium, strontium, or magnesium ions as the source resulted in the formation of vaterite (CaCO3), witherite (BaCO3), strontianite (SrCO3), and nesquehonite MgCO3·3H2O, respectively. These mineral coatings generally exhibit a compact, yet variable, thickness and are composed of agglomerated microparticles similar to those formed in solution. However, the mechanism behind this clustering remains unclear. The thermal properties of these biologically induced mineral coatings differ from their inorganic counterpart, highlighting the unique characteristics imparted by the biomineralization process. This work seeks to capitalize on the bacterium S. pasteurii's ability to form an alkali-earth metal carbonate coating to expand beyond its traditional use in geoengineering applications. It lays the ground for a novel integration of biologically induced mineralization of single or multilayered and multifunctional coating materials, for example, aerospace applications.

Effect of (in)organic additives on microbially induced calcium carbonate precipitation

AIM

This study aimed to understand the morphological effects of (in)organic additives on microbially induced calcium carbonate precipitation (MICP).

METHODS AND RESULTS

MICP was monitored in real time in the presence of (in)organic additives: bovine serum albumin (BSA), biofilm surface layer protein A (BslA), magnesium chloride (MgCl2), and poly-l-lysine. This monitoring was carried out using confocal microscopy to observe the formation of CaCO3 from the point of nucleation, in comparison to conditions without additives. Complementary methodologies, namely scanning electron microscopy, energy-dispersive X-ray spectroscopy and X-ray diffraction, were employed to assess the visual morphology, elemental composition, and crystalline structures of CaCO3, respectively, following the crystals' formation. The results demonstrated that in the presence of additives, more CaCO3 crystals were produced at 100 min compared to the reaction without additives. The inclusion of BslA resulted in larger crystals than reactions containing other additives, including MgCl2. BSA induced a significant number of crystals from the early stages of the reaction (20 min) but did not have a substantial impact on crystal size compared to conditions without additives. All additives led to a higher content of calcite compared to vaterite after a 24-h reaction, with the exception of MgCl2, which produced a substantial quantity of magnesium calcite.

CONCLUSIONS

The work demonstrates the effect of several (in)organic additives on MICP and sets the stage for further research to understand additive effects on MICP to achieve controlled CaCO3 precipitation.

Accelerated Reinforcement of Calcareous sand via Biomineralization with Aluminum Ion Flocculant

Microbially induced calcium carbonate precipitation (MICP) is an immensely growing technique that utilizes the metabolic pathways of bacteria to form calcite precipitation throughout the soil matrix, leading to improve geotechnical engineering properties. However, the excessive number of treatments limited the application of MICP for strengthening calcareous sand. To reduce the number of treatments and develop efficiencies, this paper investigates the optimized treatment protocol of adding aluminum ion flocculants to the cementing solution to accelerate the curing rate of the MICP and its effect. The results show that adding a certain concentration of AlCl3 to the cementing solution can resulted in a rapid increase in strength of the calcareous sand column. When 0.02 M aluminum chloride was added to the cementing solution, the unconfined compressive strength of the sand column reached 827 kPa after three treatments, and it reached 2 MPa after five treatments, while the control group needed to be treated 10 and 15 times, respectively, to reach equivalent strengths. In this paper, the unconfined compressive strength of the sand column formed using the proposed method was 27-40 times that of the control group at the same calcium carbonate content. The presented experimental approach can be used as a tool to design the treatment protocol for the engineering application of MICP-reinforced calcareous sand in practice.

Optimization of biocementation responses by artificial neural network and random forest in comparison to response surface methodology

In this article, the optimization of the specific urease activity (SUA) and the calcium carbonate (CaCO₃) using microbially induced calcite precipitation (MICP) was compared to optimization using three algorithms based on machine learning: random forest regressor, artificial neural networks (ANNs), and multivariate linear regression. This study applied the techniques in two existing response surface method (RSM) experiments involving MICP technique. Random forest-based models and artificial neural network-based models were submitted through the optimization of hyperparameters via cross-validation technique and grid search, to select the best-optimized model. For this study, the random forest-based algorithm is aimed at having the best performance of 0.9381 and 0.9463 in comparison to the original r² of 0.9021 and 0.8530, respectively. This study is aimed at exploring the capability of using machine learning-based models in small datasets for the purpose of optimization of experimental variables in MICP technique and the meaningfulness of the models by their specificities in the small experimental datasets applied to experimental designs. This study is aimed at exploring the capability of using machine learning-based models in small datasets for experimental variable optimization in MICP technique. The use of these techniques can create prerogatives to scale and mitigate costs in future experiments associated to the field.

Application of microbial-induced carbonate precipitation (MICP) techniques to remove heavy metal in the natural environment: A critical review

The occurrence of imbalanced heavy metals concentration due to anthropogenic hindrances in the aquatic and terrestrial environment has become a potential risk to life after circulating through different food chains. The microbial-induced carbonate precipitation (MICP) method has gradually received great attention from global researchers but the underlying mechanism of heavy metal mineralization is not well-understood and challenging, limiting the applications in wastewater engineering. This paper reviews the metabolic pathways, mechanisms, operational factors, and mathematical/modeling approaches in the MICP process. Subsequently, the recent advancement in MICP for the remediation of heavy metal pollution is being discussed. In the follow-up, the key challenges and prospective associated with technical bottlenecks of MICP method are elaborated. The prospective study reveals that MICP technology could be efficiently used to remediate heavy metal contaminants from the natural environment in a cost-effective way and has the potential to improve soil properties while remediating heavy metal contaminated soil.

Microbial-induced calcium carbonate precipitation: Influencing factors, nucleation pathways, and application in waste water remediation

Microbial-induced calcium carbonate precipitation (MICP) is a technique that uses the metabolic action of microorganisms to produce CO₃^2- which combines with free Ca²⁺ to form CaCO₃ precipitation. It has gained widespread attention in water treatment, aimed with the advantages of simultaneous removal of multiple pollutants, environmental protection, and ecological sustainability. This article reviewed the mechanism of MICP at both intra- and extra-cellular levels. It summarized the parameters affecting the MICP process in terms of bacterial concentration, ambient temperature, etc. The current status of MICP application in practical engineering is discussed. Based on this, the current technical difficulties faced in the use of MICP technology were outlined, and future research directions for MICP technology were highlighted. This review helps to improve the design of existing water treatment facilities for the simultaneous removal of multiple pollutants using the MICP and provides theoretical reference and innovative thinking for related research.

Ca2+-Facilitated Adhesion of Bacteria on the Na-Montmorillonite Surface

The adhesion of bacteria on clay surfaces strongly affected their migration and distribution in soil and water. Bacterial adhesion experiments on the Na-montmorillonite (Na-MMT) surface were conducted to determine the role of Na-MMT in the bacterial adhesion process and to prove the validity of the isotherm and kinetic theory for the bacterial surface adhesion in the presence of Ca²⁺ ions. Batch adhesion experiments with bacteria on the Na-MMT surface were carried out with varying time frames, temperatures, bacterial concentrations, and Ca²⁺ ion concentrations. The adhesion capacity of Na-MMT significantly correlated with the Ca²⁺ ion concentration, temperature, time frame, and bacterial concentration when Ca²⁺ ions were present. The adhesion morphology of the bacteria onto the Na-MMT surface, observed through the zeta-potential and atomic force microscopy (AFM), additionally demonstrated that the bacterial adhesion onto the Na-MMT surface was dominated by the nonelectrostatic force.

A novel and sustainable approach for biotransformation of phosphogypsum to calcium carbonate using urease producing Lysinibacillus sphaericus strain GUMP2

Phosphogypsum (CaSO₄) is produced as a waste by-product during phosphoric acid production in the fertilizer industry. Only 15% of worldwide phosphogypsum production is recycled, while 85% is stored in the vicinity of factories as huge piles resulting in environmental and health hazards. An extensively studied biotransformation of phosphogypsum to calcium carbonate or calcite (CaCO₃) using sulfate reducing bacteria (SRBs) is a prolonged process and results in the formation of extremely hazardous H₂S gas. Here we report for the first time a novel approach for biotransformation of phosphogypsum to CaCO₃ using urease producing Lysinibacillus sphaericus strain GUMP2. The strain could effectively transform phosphogypsum to crystalline, bead-shaped CaCO₃ precipitates. In a batch reactor with the PG loading rate of 60 g/L, 100% biotransformation was observed within seven days. After calcite recovery, the ammonium sulfate formed in the supernatant was recovered by precipitation. Urease-producing L. sphaericus strain GUMP2 could be used to remove the hazardous phosphogypsum from the environment by converting it to the industrially useful CaCO₃ and ammonium sulfate, a valuable agricultural fertilizer. This novel and sustainable approach could be a promising solution for the hazardous phosphogypsum in the phosphoric acid industries.

Influencing factors on ureolytic microbiologically induced calcium carbonate precipitation for biocementation

Microbiologically induced calcium carbonate precipitation (MICP) is a technique that has received a lot of attention in the field of geotechnology in the last decade. It has the potential to provide a sustainable and ecological alternative to conventional consolidation of minerals, for example by the use of cement. From a variety of microbiological metabolic pathways that can induce calcium carbonate (CaCO₃) precipitation, ureolysis has been established as the most commonly used method. To better understand the mechanisms of MICP and to develop new processes and optimize existing ones based on this understanding, ureolytic MICP is the subject of intensive research. The interplay of biological and civil engineering aspects shows how interdisciplinary research needs to be to advance the potential of this technology. This paper describes and critically discusses, based on current literature, the key influencing factors involved in the cementation of sand by ureolytic MICP. Due to the complexity of MICP, these factors often influence each other, making it essential for researchers from all disciplines to be aware of these factors and its interactions. Furthermore, this paper discusses the opportunities and challenges for future research in this area to provide impetus for studies that can further advance the understanding of MICP.

Effect of microbially induced calcium carbonate precipitation treatment on the solidification and stabilization of municipal solid waste incineration fly ash (MSWI FA) - Based materials incorporated with metakaolin

Microbially induced calcium carbonate precipitation (MICP) has been considered as a potential treatment method for the solidification and stabilization of municipal solid waste incineration fly ash (MSWI-FA).The main obstacle for MICP treatment of MSWI-FA is the harsh environment which causes the bacteria fail to maintain their urease activity effectively, thus decreases the solidification effect and material properties. Currently, there is no research on blending metakaolin (MK) as a protective carrier for the bacteria into the MSWI-FA. The effect of the MICP process on the curing properties of MSWI FA-based cementing materials in the MK and MSWI-FA reaction system is largely unknown. In this study, different mixing ratios of MK were used to adjust the Ca/Si/Al ratio in the mixture, and the properties of the cementing material (MSWI-FA mixed with MK and water) and the MICP-treated material (MSWI-FA mixed with MK and bacterial solution) were investigated. This study contributes to find suitable additives to promote effect of MICP on the solidification of MSWI-FA and the improvement of material properties. The results showed when the mixing ratio of MSWI FA was 90 wt %, the MICP treatment was able to increase the compressive strength of the samples up to 0.99 Mp, and the compressive strength of samples reached 1.46 MPa, when the mixing ratio of MSWI FA was 80 wt %. Though the metakaolin did not show inhibitory effect on the urease activity, the compressive strength of the MICP-treated samples did not further show a significant increase when the mixture of MK was increased from 20 wt% to 30 wt%. Further investigation suggested that MICP activities of bacteria utilizing calcium sources could have an impact on the formation/deformation of calcium-containing hydration products in the reaction system, thus affecting the mechanical and chemical properties of MSWI based materials. MICP treatment is effective in the immobilization of certain heavy metals of MSWI FA, especially for Pb, Cd and Zn. This research shows the potential of using MICP to treat the MSWI fly ash, meanwhile, it is necessary to find suitable reaction system with the proper additives in order to further improve the properties of the MSWI FA based material in terms of mechanical performance.

Characterization and applicability of novel alkali-tolerant carbonatogenic bacteria as environment-friendly bioconsolidants for management of concrete structures and soil erosion

Cracking and erosion are critical factors that reduce the mechanical properties and stability of concrete structures and soil, respectively. They are recognized worldwide as severe disasters causing the collapse of many structures including stone heritage and dams, and landslides. Therefore, it is essential to propose effective and environment-friendly management methods to prevent them. Carbonatogenesis has recently received considerable attention as a reliable biological process for remediating cracks in calcareous structures, stabilizing loose soils, and sequestering CO₂ in the environment. Isolating and characterizing carbonatogenic bacteria with excellent performance is crucial for applying this process to the field of environmental and civil engineering. The aim of this study was to isolate new CaCO₃-precipitating bacteria and investigate various properties for their use as bioconsolidants. Furthermore, the possibility of restoring damaged structures and stabilizing loose sandy soil using isolated strain was investigated. Strain LC13 with urease and CaCO₃-precipitating activity was isolated from limestone cave soil in Korea and identified as Arthrobacter sulfureus by phenotypic characterization and 16S rRNA gene analysis. Although cell growth was observed after an adaptation period at pH 11, strain LC13 grew well at pH 7-11, indicating alkali tolerance. The optimal conditions for CaCO₃ precipitation were 1.0% yeast extract, 2.5% urea, 0.35% NaHCO₃, and 400 mM CaCl₂, with an initial pH of 6.5 at 30 °C. Under optimized conditions, maximal CaCO₃ (22.92 ± 0.14 g/l) precipitated after 3 days, which was 10.8-fold higher than the value in a urea-CaCl₂ medium. CaCO₃ precipitation by strain LC13 was associated with an increased pH due to ureolysis and protein deamination. Using an optimized medium as a cementation solution, strain LC13 completely remediated 340-760 μm wide cracks over 3 days, and also restored the spalling of concrete surfaces. Furthermore, the sand treated with LC13 solidified with a surface strength of 14.9 kPa. Instrumental analysis confirmed that the crystals precipitated were a mixture of CaCO₃ polymorphs composed of rhombohedral calcite and spherical vaterite. These results suggest that A. sulfureus LC13 may be useful for implementing sustainable biorestoration and environmental management technologies such as the in situ remediation of structural cracks and in situ prevention of soil erosion.

Research status and development of microbial induced calcium carbonate mineralization technology

In nature, biomineralization is a common phenomenon, which can be further divided into authigenic and artificially induced mineralization. In recent years, artificially induced mineralization technology has been gradually extended to major engineering fields. Therefore, by elaborating the reaction mechanism and bacteria of mineralization process, and summarized various molecular dynamics equations involved in the mineralization process, including microbial and nutrient transport equations, microbial adsorption equations, growth equations, urea hydrolysis equations, and precipitation equations. Because of the environmental adaptation stage of microorganisms in sandy soil, their reaction rate in sandy soil environment is slower than that in solution environment, the influencing factors are more different, in general, including substrate concentration, temperature, pH, particle size and grouting method. Based on the characteristics of microbial mineralization such as strong cementation ability, fast, efficient, and easy to control, there are good prospects for application in sandy soil curing, building improvement, heavy metal fixation, oil reservoir dissection, and CO₂ capture. Finally, it is discussed and summarized the problems and future development directions on the road of commercialization of microbial induced calcium carbonate precipitation technology from laboratory to field application.

Relationship between Bacterial Contribution and Self-Healing Effect of Cement-Based Materials

The civil research community has been attracted to self-healing bacterial-based concrete as a potential solution in the economy 4.0 era. This concept provides more sustainable material with a longer lifetime due to the reduction of crack appearance and the need for anthropogenic impact. Regardless of the achievements in this field, the gap in the understanding of the importance of the bacterial role in self-healing concrete remains. Therefore, understanding the bacterial life cycle in the self-healing effect of cement-based materials and selecting the most important relationship between bacterial contribution, self-healing effect, and material characteristics through the process of microbiologically (bacterially) induced carbonate precipitation is just the initial phase for potential applications in real environmental conditions. The concept of this study offers the possibility to recognize the importance of the bacterial life cycle in terms of application in extreme conditions of cement-based materials and maintaining bacterial roles during the self-healing effect.

Effect of Immobilizing Bacillus megaterium on the Compressive Strength and Water Absorption of Mortar

The world’s growing population and industrialization have led to increased construction activities. This has increased the amount of waste aggregates which can be recycled in construction and cut the cost of infrastructure development. This study, therefore, reports the experimental findings for the effect of immobilizing Bacillus megaterium on the compressive strength and water absorption of laboratory prepared test mortar. Bacterial solution used in this work had a concentration of 1.0 × 107 cells/mL. The impact of recycled mortar impregnated with bacteria was studied after curing the specimens in water, saturated lime water, and 1.5% sulfuric acid. Compressive strength for test specimens cured in the three media was determined at the 2nd, 7th, 28th, and 56th day of curing. SEM analysis was done for mortars cured in acidic media and saturated lime water after curing for 28 days. The test results indicated that curing in water and saturated water improved the compressive strength, while the acidic medium lowered it. Recycled mortar is, therefore, an ideal material for immobilizing Bacillus megaterium before introduction into fresh concrete/mortar. The use of recycled mortar is a good strategy to reduce wastes from construction activities, save on the cost of construction materials, and enhance environmental conservation.

A review on the applications of microbially induced calcium carbonate precipitation in solid waste treatment and soil remediation

Improper disposal and accumulation of solid waste can cause a number of environmental problems, such as the heavy metal contamination of soil. Microbially induced calcium carbonate precipitation (MICP) is considered as a promising technology to solve many environmental problems. Calcium-based solid waste can be utilized as an alternative source of calcium for the MICP process, and carbonate-based biominerals can be used for soil remediation, solid waste treatment, remediation of construction concrete, and generation of bioconcrete. This paper describes the metabolic pathways and mechanisms of microbially induced calcium carbonate precipitation and highlights the value of MICP for solid waste treatment and soil remediation applications. The factors affecting the effectiveness of MICP are discussed and analyzed through an overview of recent studies on the application of MICP in environmental engineering. The paper also summarizes the current challenges for the large-scale application of this innovative technology. In prospective study, MICP can be an effective alternative to conventional technologies in solid waste treatment, soil remediation and CO₂ sequestration, as it can reduce negative environmental impacts and provide long-term economic benefits.

Microbial Concrete-a Sustainable Solution for Concrete Construction

In the ever-increasing demand of construction and construction materials worldwide, concrete is the most extensively used material for construction purposes almost next to the water. Therefore, there is a dire need of clean, green and durable concrete. Recently, an environmentally friendly strategy has been employed to manufacture bio-concrete by the usage of microorganisms in the traditional concrete to enhance its durability and compressive strength. In this review, we discuss the role of microbes in influencing the various properties of concrete such as compressive strength, flexural strength and tensile strength by reducing the concrete porosity and diminishing water absorption. The mechanism of microbial-induced calcium carbonate precipitation (MICP) in the traditional concrete by the action of microbes which resulted in the formation of bio-concrete as an improved building material has also been discussed. Additionally, an in-depth comparative analysis of the performance of bio-concrete with the traditional concrete synthesized from various industrial wastes such as silica fume, rice husk ash and metakaolin in terms of different properties such as compressive strength, flexural strength and percentage water absorption has been presented. This review highlights the impact of usage of microbes in the conventional concrete to produce novel and eco-friendly bio-concrete in construction technology.

An Experimental Investigation of Microbial-Induced Carbonate Precipitation on Mitigating Beach Erosion

Microbial-induced calcium carbonate precipitation (MICP) has the potential to be an environmentally friendly technique alternative to traditional methods for sustainable coastal stabilization. This study used a non-pathogenic strain that exists in nature to experimentally investigate the application of the MICP technique on mitigating sandy beach erosion. First, the unconfined compressive strength (UCS) test was adopted to explore the consolidation performance of beach sand after the MICP treatment, and then model tests in a wave flume were conducted to investigate the MICP ability to mitigate beach erosion by plunger waves. This study also employed field emission scanning electron microscopy (FE-SEM) and energy-dispersive X-ray spectroscopy (EDS) to observe the crystal forms of MICP-treated sand after wave action. The results reveal that the natural beach sand could be consolidated by the MICP treatment, and the compressive strength increased with the increase in the cementation media concentration. In this study, the maximum compressive strength could be achieved was 517.3 kPa. The one-phase and two-phase MICP treatment strategies were compared of sandy beach erosion tests with various spray and injection methods on the beach surface. The research results indicate that the proper MICP treatment could mitigate beach erosion under various wave conditions; the use of MICP reduced beach erosion up to 33.9% of the maximum scour depth.

Advances in Enzyme Induced Carbonate Precipitation and Application to Soil Improvement: A Review

Climate change and global warming have prompted a notable shift towards sustainable geotechnics and construction materials within the geotechnical engineer’s community. Earthen construction materials, in particular, are considered sustainable due to their inherent characteristics of having low embodied and operational energies, fire resistance, and ease of recyclability. Despite these attributes, they have not been part of the mainstream construction due to their susceptibility to water-induced deterioration. Conventional soil improvement techniques are generally expensive, energy-intensive, and environmentally harmful. Recently, biostabilization has emerged as a sustainable alternative that can overcome some of the limitations of existing soil improvement methods. Enzyme-induced carbonate precipitation (EICP) is a particularly promising technique due to its ease of application and compatibility with different soil types. EICP exploits the urease enzyme as a catalyst to promote the hydrolysis of urea inside the pore water, which, in the presence of calcium ions, results in the precipitation of calcium carbonate. The purpose of this paper is to provide a state-of-the-art review of EICP stabilization, highlighting the potential application of this technique to field problems and identifying current research gaps. The paper discusses recent progress, focusing on the most important factors that govern the efficiency of the chemical reactions and the precipitation of a spatially homogenous carbonate phase. The paper also discusses other aspects of EICP stabilization, including the degree of ground improvement, the prediction of the pore structure of the treated soil by numerical simulations, and the remediation of potentially toxic EICP by-products.

Dairy manure pellets and palm oil mill effluent as alternative nutrient sources in cultivating Sporosarcina pasteurii for calcium carbonate bioprecipitation

Microbially induced carbonate precipitation (MICP) is a process that hydrolysis urea by microbial urease to fill the pore spaces of soil with induced calcium carbonate (CaCO₃ ) precipitates, which eventually results in improved or solidified soil. This research explored the possibility of using dairy manure pellets (DMP) and palm oil mill effluent (POME) as alternative nutrient sources for Sporosarcina pasteurii cultivation and CaCO₃ bioprecipitation. Different concentrations (20 to 80 g l^-1 ) of DMP and POME were used to propagate the cells of Sporosarcina pasteurii under laboratory conditions. The measured CaCO₃ contents for MICP soil specimens that were treated with bacterial cultures grown in DMP medium (60%, w/v) was 15.30 ±0.04g ml^-1 and POME medium (40%, v/v) was 15.49 ±0.05g ml^-1 after 21 days curing. The scanning electron microscopy showed that soil treated with DMP had rhombohedral structure-like crystals with smooth surfaces, while that of POME entailed ring-like cubical formation with rough surfaces Electron dispersive X-ray analysis was able to identify a high mass percentage of chemical element compositions (Ca, C, and O), while spectrum from Fourier-transform infrared spectroscopy confirmed the vibration peak intensities for CaCO₃ . Atomic force microscopy further showed clear topographical differences on the crystal surface structures that were formed around the MICP treated soil samples. These nutrient sources (DMP and POME) showed encouraging potential cultivation mediums to address high costs related to bacterial cultivation and biocementation treatment.

A Review on the Performance Evaluation of Autonomous Self-Healing Bacterial Concrete: Mechanisms, Strength, Durability, and Microstructural Properties

The development of cracks, owing to a relatively lower tensile strength of concrete, diverse loading, and environmental factors driving the deterioration of structures, is an inescapable key concern for engineers. Reparation and maintenance operations are thus extremely important to prevent cracks from spreading and mitigating the lifetime of structures. However, ease of access to the cracked zone may be challenging, and it also needs funds and manual power. Hence, autonomous sealing of cracks employing microorganisms into the concrete sans manual intervention is a promising solution to the dilemma of the sustainable improvement of concrete. ‘Ureolytic bacteria’, key organism species in rumen-producing ‘urease’ enzymes such as Bacillus pasteurii or subtilis—when induced—are capable of producing calcium carbonate precipitations into the concrete. As their cell wall is anionic, CaCO3 accumulation on their surface is extensive, and the whole cell, therefore, becomes crystalline and ultimately plugs pores and cracks. This natural induction technique is an environmentally friendly method that researchers are studying intensively. This manuscript reviews the application process of bacterial healing to manufacture autonomous self-healing bacterial concrete. Additionally, it provides a brief review of diverse attributes of this novel concrete which demonstrate the variations with the auto-addition of different bacteria, along with an evaluation of crack healing as a result of the addition of these bacteria directly into concrete or after encapsulation in a protective shell. Comparative assessment techniques for autonomous, bio-based self-healing are also discussed, accompanied by progress, potential, modes of application of this technique, and its resultant benefits in the context of strength and durability. Imperatives for quantitative sustainability assessment and industrial adoption are identified, along with the sealing of artificially cracked cement mortar with sand as a filling material in given spaces, as well as urea and CaCl2 medium treatment with Bacillus pasteurii and Sporosarcina bacteria. The assessment of the impact on the compressive strength and rigidity of cement mortar cubes after the addition of bacteria into the mix is also considered. Scanning electron microscope (SEM) images on the function of bacteria in mineral precipitation that is microbiologically induced are also reviewed. Lastly, future research scope and present gaps are recognised and discussed.

Enzyme-mediated biocalcification by a novel alkaliphilic Bacillus psychrodurans LC40 and its eco-friendly application as a biosealant for crack healing

Biocalcification is a natural biochemical process, which has been regarded as a promising method for sequestering heavy metals or carbon dioxide in the environment, healing cracks in concrete structures, and stabilizing soil. One of the key factors in this process is calcium carbonate-producing bacteria. The purpose of this study was to maximize the production of calcium carbonate by alkaliphilic Bacillus psychrodurans LC40 isolated from a limestone cave, by manipulating the medium composition for fast and non-detrimental crack healing, and to investigate the mechanism of its production. Strain LC40 could grow well in the strongly alkaline region (pH 9.5-11), indicating its alkaliphilic nature. The optimal medium for calcium carbonate production contained 2% tryptone, 1.5% urea, 0.15% NaHCO₃, and 150 mM calcium formate (pH 6). Using this medium, the yield of calcium carbonate at 72 h was approximately 8.6-fold higher than that obtained through Urea-CaCl₂ medium. In this culture, the urease and carbonic anhydrase activities were observed simultaneously, and the pH of the medium was found to have increased to 9.4, leading to maximum calcium carbonate production. This suggests that this pH value is achieved by the synergistic action of the two enzymes, resulting in a high calcium carbonate yield. The crystals were characterized by FESEM, EDS and XRD, which confirmed the production of rhombohedral and spherical calcium carbonate crystals containing vaterite and calcite. Strain LC40 completely healed a 0.75 mm wide crack in a very short time of 3 days using the optimized medium as a cementation solution. Our findings indicate that B. psychrodurans LC40 could be a promising candidate for the development of eco-friendly biosealant applicable to environmentally stressed concrete structures.

Reinforcement of Recycled Aggregate by Microbial-Induced Mineralization and Deposition of Calcium Carbonate—Influencing Factors, Mechanism and Effect of Reinforcement

Recycled aggregate is aggregate prepared from construction waste. With the development of a global economy and people’s attention to sustainable development, recycled aggregate has shown advantages in replacing natural aggregate in the production of concrete due to its environmental friendliness, low energy consumption, and low cost. Recycled aggregate exhibits high water absorption and a multi-interface transition zone, which limits its application scope. Researchers have used various methods to improve the properties of recycled aggregate, such as microbially induced calcium carbonate precipitation (MICP) technology. In this paper, the results of recent studies on the reinforcement of recycled aggregate by MICP technology are synthesized, and the factors affecting the strengthening effect of recycled aggregate are reviewed. Moreover, the strengthening mechanism, advantages and disadvantages of MICP technology are summarized. After the modified treatment, the aggregate performance is significantly improved. Regardless of whether the aggregate was used in mortar or concrete, the mechanical properties of the specimens were clearly improved. However, there are some issues regarding the application of MICP technology, such as the use of an expensive culture medium, a long modification cycle, and untargeted mineralization deposition. These difficulties need to be overcome in the future for the industrialization of regenerated aggregate materials via MICP technology.

Microbially induced calcite precipitation performance of multiple landfill indigenous bacteria compared to a commercially available bacteria in porous media

Microbially Induced Carbonate Precipitation (MICP) is currently viewed as one of the potential prominent processes for field applications towards the prevention of soil erosion, healing cracks in bricks, and groundwater contamination. Typically, the bacteria involved in MICP manipulate their environment leading to calcite precipitation with an enzyme such as urease, causing calcite crystals to form on the surface of grains forming cementation bonds between particles that help in reducing soil permeability and increase overall compressive strength. In this paper, the main focus is to study the MICP performance of three indigenous landfill bacteria against a well-known commercially bought MICP bacteria (Bacillus megaterium) using sand columns. In order to check the viability of the method for potential field conditions, the tests were carried out at slightly less favourable environmental conditions, i.e., at temperatures between 15-17°C and without the addition of urease enzymes. Furthermore, the sand was loose without any compaction to imitate real ground conditions. The results showed that the indigenous bacteria yielded similar permeability reduction (4.79 E-05 to 5.65 E-05) and calcium carbonate formation (14.4–14.7%) to the control bacteria (Bacillus megaterium), which had permeability reduction of 4.56 E-5 and CaCO₃ of 13.6%. Also, reasonably good unconfined compressive strengths (160–258 kPa) were noted for the indigenous bacteria samples (160 kPa). SEM and XRD showed the variation of biocrystals formation mainly detected as Calcite and Vaterite. Overall, all of the indigenous bacteria performed slightly better than the control bacteria in strength, permeability, and CaCO₃ precipitation. In retrospect, this study provides clear evidence that the indigenous bacteria in such environments can provide similar calcite precipitation potential as well-documented bacteria from cell culture banks. Hence, the idea of MICP field application through biostimulation of indigenous bacteria rather than bioaugmentation can become a reality in the near future.

Characterization of a Novel CaCO3-Forming Alkali-Tolerant Rhodococcus erythreus S26 as a Filling Agent for Repairing Concrete Cracks

Biomineralization, a well-known natural phenomenon associated with various microbial species, is being studied to protect and strengthen building materials such as concrete. We characterized Rhodococcus erythreus S26, a novel urease-producing bacterium exhibiting CaCO₃-forming activity, and investigated its ability in repairing concrete cracks for the development of environment-friendly sealants. Strain S26 grown in solid medium formed spherical and polygonal CaCO₃ crystals. The S26 cells grown in a urea-containing liquid medium caused culture fluid alkalinization and increased CaCO₃ levels, indicating that ureolysis was responsible for CaCO₃ formation. Urease activity and CaCO₃ formation increased with incubation time, reaching a maximum of 2054 U/min/mL and 3.83 g/L, respectively, at day four. The maximum CaCO₃ formation was achieved when calcium lactate was used as the calcium source, followed by calcium gluconate. Although cell growth was observed after the induction period at pH 10.5, strain S26 could grow at a wide range of pH 4–10.5, showing its high alkali tolerance. FESEM showed rhombohedral crystals of 20–60 µm in size. EDX analysis indicated the presence of calcium, carbon, and oxygen in the crystals. XRD confirmed these crystals as CaCO₃ containing calcite and vaterite. Furthermore, R. erythreus S26 successfully repaired the artificially induced large cracks of 0.4–0.6 mm width.

MICP as a potential sustainable technique to treat or entrap contaminants in the natural environment: A review

In the last two decades, developments in the area of biomineralization has yielded promising results making it a potentially environmentally friendly technique for a wide range of applications in engineering and wastewater/heavy metal remediation. Microbially Induced Carbonate Precipitation (MICP) has led to numerous patented applications ranging from novel strains and nutrient sources for the precipitation of biominerals. Studies are being constantly published to optimize the process to become a promising, cost effective, ecofriendly approach when compared with the existing traditional remediation technologies which are implemented to solve multiple contamination/pollution issues. Heavy metal pollution still poses a major threat towards compromising the ecosystem. The removal of heavy metals is of high importance due to their recalcitrance and persistence in the environment. In that perspective, this paper reviews the current and most significant discoveries and applications of MICP towards the conversion of heavy metals into heavy metal carbonates and removal of calcium from contaminated media such as polluted water. It is evident from the literature survey that although heavy metal carbonate research is very effective in removal, is still in its early stages but could serve as a solution if the microorganisms are stimulated directly in the heavy metal environment.

Bacterial-induced mineralization (BIM) for soil solidification and heavy metal stabilization: A critical review

Solidification and stabilization (S/S) treatment via cement is common and effective for improving soil strength and stabilizing heavy metals in contaminated soils, but has certain drawbacks, such as high fossil energy consumption, big carbon footprint, poor chemical compatibility, and ambiguous long-term stability. This paper innovatively proposes bacterial-induced mineralization (BIM) as an eco-friendly and efficient S/S method. In the BIM-S/S treatment, life activities of bacteria produce minerals to cement the soil particles and fix the heavy metals. This review firstly summarizes the basic theories of BIM technology followed by the evaluation on remediation effects and long-term stability in terms of soil solidification and heavy metal stabilization. Then the factors in BIM-S/S application are reviewed. Emphasis is put on the comparison of the BIM-S/S effect with that of cement-based-S/S technology. It is concluded that BIM-S/S technology is promising with outstanding performance in sustainability. On the other hand, current limitations and deficiencies with this technology are identified finally, hereby the directions for future research are pointed to make a major advancement in the BIM-S/S technology.

Insights into the Current Trends in the Utilization of Bacteria for Microbially Induced Calcium Carbonate Precipitation

Nowadays, microbially induced calcium carbonate precipitation (MICP) has received great attention for its potential in construction and geotechnical applications. This technique has been used in biocementation of sand, consolidation of soil, production of self-healing concrete or mortar, and removal of heavy metal ions from water. The products of MICP often have enhanced strength, durability, and self-healing ability. Utilization of the MICP technique can also increase sustainability, especially in the construction industry where a huge portion of the materials used is not sustainable. The presence of bacteria is essential for MICP to occur. Bacteria promote the conversion of suitable compounds into carbonate ions, change the microenvironment to favor precipitation of calcium carbonate, and act as precipitation sites for calcium carbonate crystals. Many bacteria have been discovered and tested for MICP potential. This paper reviews the bacteria used for MICP in some of the most recent studies. Bacteria that can cause MICP include ureolytic bacteria, non-ureolytic bacteria, cyanobacteria, nitrate reducing bacteria, and sulfate reducing bacteria. The most studied bacterium for MICP over the years is Sporosarcina pasteurii. Other bacteria from Bacillus species are also frequently investigated. Several factors that affect MICP performance are bacterial strain, bacterial concentration, nutrient concentration, calcium source concentration, addition of other substances, and methods to distribute bacteria. Several suggestions for future studies such as CO₂ sequestration through MICP, cost reduction by using plant or animal wastes as media, and genetic modification of bacteria to enhance MICP have been put forward.

Heavy Metal Immobilization Studies and Enhancement in Geotechnical Properties of Cohesive Soils by EICP Technique

Soil treatment methods to cope with ever-growing demands of construction industry and environmental aspects are always explored for their suitability in different in-situ conditions. Of late, enzyme induced calcite precipitation (EICP) is gaining importance as a reliable technique to improve soil properties and for contaminant remediation scenarios. In the present work, swelling and permeability characteristics of two native Indian cohesive soils (Black and Red) are explored. Experiments on the sorption and desorption of multiple heavy metals (Cd, Ni and Pb) onto these soils were conducted to understand the sorptive response of the heavy metals. To improve the heavy metal retention capacity and enhance swelling and permeability characteristics, the selected soils were treated with different enzyme solutions. The results revealed that EICP technique could immobilize the heavy metals in selected soils to a significant level and reduce the swelling and permeability. This technique is contaminant selective and performance varies with the nature and type of heavy metal used. Citric acid (C6H8O7) and ethylene diamine tetra-acetic acid (EDTA) were used as extractants in the present study to study the desorption response of heavy metals for different EICP conditions. The results indicate that calcium carbonate (CaCO3) precipitate deposited in the voids of soil has the innate potential in reducing the permeability of soil up to 47-fold and swelling pressure by 4-fold at the end of 21 days of curing period. Reduction in permeability and swell, following EICP treatment can be maintained with one time rinsing of the treated soil in water to avoid dissolution of precipitated CaCO3. Outcomes of this study have revealed that EICP technique can be adopted on selected native soils to reduce swelling and permeability characteristics followed by enhanced contaminant remediation enabling their potential as excellent landfill liner materials.

A selected bacterial strain for the self-healing process in cementitious specimens without cell immobilization steps

The use of microorganisms capable of mediating the bioprecipitation process can be an important application in the self-healing processes of cement specimens. Thus, the present study identified and evaluated five Bacillus strains for potential application in the protocol of self-healing via bioprecipitation. Cell growth, enzyme production, and kinetic parameters conditions were evaluated during the fermentation process. Based on the analysis of 16S rDNA in conjunction with biochemical testing, results demonstrate that the strains are either Bacillus cereus or Bacillus thuringiensis. Strategically it was found that the addition of glycerol to fermentative medium was essential to increase the bacterial concentration (≈ 4.2 × 10⁷ cells mL^-1) and production of the enzyme urease (≈ 3.623,2 U.mL^-1). The addition of this medium after 40 days of fermentation promoted the self-healing of cracks and increased compressive strength in ≈ 14.2% of the cementitious specimens; therefore, increasing the sustainability and engineering properties of cement-based materials.

Analysis and optimization of process parameters for in vitro biomineralization of CaCO3 by Klebsiella pneumoniae, isolated from a stalactite from the Sahastradhara cave

Stalactite is a speleothem which is usually made up of calcium carbonate crystals. In the present study the bacterial isolates, recovered from a stalactite from the Sahastradhara cave, were screened for their ability to precipitate calcium carbonate in order to understand whether mineralization in caves is a biogenic process or not. Five bacterial isolates were found to precipitate calcium carbonate via urease. The most potent bacterial isolate was identified as Klebsiella pneumoniae (accession number MG946801) based on 16S rDNA sequencing. The optimized conditions, for calcium carbonate precipitation, determined by response surface methodology using CCD were found to be: 1.5625% urea, 19.98% inoculum level, 6.98 pH and 38 h 24 min. The morphology and crystalline structure of the precipitated mineral were revealed by SEM. EDX analysis confirmed the presence of carbon, oxygen and calcium in a precipitated crystal. XRD analysis confirmed the crystalline structure of a mineral with rhombohedral shape and 166 Å crystal size. This bacterium can serve as a promising candidate for producing bioconcrete.

Stalactite is a speleothem which is usually made up of calcium carbonate crystals.

Chitosan enhances calcium carbonate precipitation and solidification mediated by bacteria

Formation of the biominerals in living organisms is mainly associated with organic macromolecules. These organic materials play an important role in the nucleation, growth, and morphology controls of the biominerals. Current study mimics this concept of organic matrix- mediated biomineralization by using microbial induced carbonate precipitation (MICP) method in combination with the cationic polysaccharide chitosan. CaCO₃ precipitation was performed by the hydrolysis of urea by the ureolytic bacteria Pararhodobacter sp. SO1 in the presence of CaCl₂, with and without chitosan. The crystal polymorphism and morphology of oven-dried samples were analyzed by X-ray diffraction and scanning electron microscopy. The amount of precipitate obtained was higher in the presence of chitosan. The precipitate included both of the CaCO₃ and the chitosan hydrogel. Rhombohedral crystals were dominant in the precipitate without chitosan and distorted crystal agglomerations were found with chitosan. Sand solidification experiments were conducted in the presence of chitosan under different experimental conditions. By adding chitosan, more strongly cemented sand specimens could be obtained than those from conventional method. All of these results confirm the positive effect of chitosan for the CaCO₃ precipitation and sand solidification.

Influence of temperature on microbially induced calcium carbonate precipitation for soil treatment

Microbially induced calcium carbonate precipitation (MICP) is a potential method for improvement of soil. A laboratory study was conducted to investigate the influence of temperatures for soil improvement by MICP. The ureolytic activity experiments, MICP experiments in aqueous solution and sand column using Sporosarcina pasteurii were conducted at different temperatures(10, 15, 20, 25 and 30°C). The results showed there were microbially induced CaCO₃ precipitation at all the temperatures from 10 to 30°C. The results of ureolytic activity experiments showed that the bacterial had higher ureolytic activity at high temperatures within the early 20 hours, however, the ureolytic activity at higher temperatures decreased more quickly than at lower temperatures. The results of MICP experiments in aqueous solution and sand column were consistent with tests of ureolytic activity. Within 20 to 50 hours of the start of the test, more CaCO₃ precipitation was precipitated at higher temperature, subsequently, the precipitation rate of all experiments decreased, and the higher the temperature, the faster the precipitation rate dropped. The final precipitation amount of CaCO₃ in aqueous solution and sand column tests at 10 °C was 92% and 37% higher than that at 30 °C. The maximum unconfined compressive strength of MICP treated sand column at 10 °C was 135% higher than that at 30 °C. The final treatment effect of MICP at lower temperature was better than that at high temperature within the temperature range studied. The reason for better treatment effect at lower temperatures was due to the longer retention time of ureolytic activity of bacteria at lower temperatures.

Precipitation and characterization of CaCO3 of Bacillus amyloliquefaciens U17 strain producing urease and carbonic anhydrase

In the present study, the properties of calcium carbonate mineralization and urease and carbonic anhydrase activities of Bacillus amyloliquefaciens U17 isolated from calcareous soil of Denizli (Turkey) were analyzed. CaCO3 was produced in all growth phases. Strain U17 showed 0.615 ± 0.092 µmol/min/mg urease enzyme activity in calcium mineralization medium and 1.315 ± 0.021 µmol/min/mg urease enzyme activity in Luria-Bertani medium supplemented with urea, whereas it showed 36.03 ± 5.48 nmol/min/mg carbonic anhydrase enzyme activity in CaCO3 precipitation medium and 28.82 ± 3.31 nmol/min/mg carbonic anhydrase enzyme activity in Luria-Bertani medium supplemented with urea. The urease B protein expression level of strain U17 was detected by western blotting for the first time. The produced CaCO3 crystals were analyzed by X-ray diffraction, X-ray fluorescence, confocal RAMAN spectrophotometer, scanning electron microscopy, and electron probe microanalyzer for the evaluation of their morphological and elemental properties. Rhombohedral vaterite and layered calcite crystals were clearly detected and verified by mineralogical analyses. All these results showed that strain U17 can be used in many engineering and geological applications due to its CaCO3 precipitation ability.

Biocalcification by Piezotolerant Bacillus sp. NIOTVJ5 Isolated from Deep Sea Sediment and its Influence on the Strength of Concrete Specimens

Biocalcification or microbially induced carbonate precipitation (MICP) is gaining attention from the research fraternity, primarily ascribed to their eco-friendly applications. Bacterial strains have been isolated from various sources and their ability to precipitate carbonate has been studied extensively. In spite of the fact that the deep-sea environment is a potential source for bioprospecting, meager reports exist on the isolation of biocalcifying bacterial strains from deep-sea. In this study, a deep-sea sediment sample obtained from off-Barren Island coast in the Andaman Sea was investigated for biocalcifying strains. Based on the urease activity and the ability to produce calcite crystals, the strain NIOTVJ5 was chosen for further investigations. The strain showed a similarity to Bacillus thuringiensis through 16S rRNA sequencing and was shown to possess positive urease, protease, amylase, catalase, and oxidase activities. The isolate was found to be piezotolerant as it was able to survive at 100 bar pressure with significant changes in the spore morphology. The strain was able to produce strong monoxenic biofilms as well. Maximum urease activity was 554.03 U/mL and it precipitated 1.80 g/L of carbonate crystals. Scanning electron microscopy coupled with energy dispersive X-ray spectroscopy confirmed the presence of calcium carbonate. The carbonate polymorph was identified as calcite using X-ray powder diffraction. The impact of biocalcification by NIOTVJ5 on concrete specimens indicated an increase of 30.91% in their compressive strength. This is the first report of a biocalcifying strain from a deep-sea sediment around the Indian subcontinent region. This study indicates the potential of the strain NIOTVJ5, which can be employed for various biotechnological applications.

Alkaliphiles: The Emerging Biological Tools Enhancing Concrete Durability

Concrete is one of the most commonly used building materials ever used. Despite it is a very important and common construction material, concrete is very sensitive to crack formation and requires repair. A variety of chemical-based techniques and materials have been developed to repair concrete cracks. Although the use of these chemical-based repair systems are the best commercially available choices, there have also been concerns related to their use. These repair agents suffer from inefficiency and unsustainability. Most of the products are expensive and susceptible to degradation, exhibit poor bonding to the cracked concrete surfaces, and are characterized by different physical properties such as thermal expansion coefficients which are different to that of concrete. Moreover, many of these repair agents contain chemicals that pose environmental and health hazards. Thus, there has been interest in developing concrete crack repair agents that are efficient, long lasting, safe, and benign to the environment and exhibit physical properties which resemble that of the concrete. The search initiated by these desires brought the use of biomineralization processes as tools in mending concrete cracks. Among biomineralization processes, microbially initiated calcite precipitation has emerged as an interesting alternative to the existing chemical-based concrete crack repairing system. Indeed, results of several studies on the use of microbial-based concrete repair agents revealed the remarkable potential of this approach in the fight against concrete deterioration. In addition to repairing existing concrete cracks, microorganisms have also been considered to make protective surface coating (biodeposition) on concrete structures and in making self-healing concrete.Even though a wide variety of microorganisms can precipitate calcite, the nature of concrete determines their applicability. One of the important factors that determine the applicability of microbes in concrete is pH. Concrete is highly alkaline in nature, and hence the microbes envisioned for this application are alkaliphilic or alkali-tolerant. This work reviews the available information on applications of microbes in concrete: repairing existing cracks, biodeposition, and self-healing. Moreover, an effort is made to discuss biomineralization processes that are relevant to extend the durability of concrete structures. Graphical Abstract.

Biomineralisation performance of bacteria isolated from a landfill in China

We report an investigation of microbially induced carbonate precipitation by seven indigenous bacteria isolated from a landfill in China. Bacterial strains were cultured in a medium supplemented with 25 mmol/L calcium chloride and 333 mmol/L urea. The experiments were carried out at 30 °C for 7 days with agitation by a shaking table at 130 r/min. Scanning electron microscopic and X-ray diffraction analyses showed variations in calcium carbonate polymorphs and mineral composition induced by all bacterial strains. The amount of carbonate precipitation was quantified by titration. The amount of carbonate precipitated in the medium varied among isolates, with the lowest being Bacillus aerius rawirorabr15 (LC092833) precipitating around 1.5 times more carbonate per unit volume than the abiotic (blank) solution. Pseudomonas nitroreducens szh_asesj15 (LC090854) was found to be the most efficient, precipitating 3.2 times more carbonate than the abiotic solution. Our results indicate that bacterial carbonate precipitation occurred through ureolysis and suggest that variations in carbonate crystal polymorphs and rates of precipitation were driven by strain-specific differences in urease expression and response to the alkaline environment. These results and the method applied provide benchmarking and screening data for assessing the bioremediation potential of indigenous bacteria for containment of contaminants in landfills.

Porous Inorganic Carriers Based on Silica, Calcium Carbonate and Calcium Phosphate for Controlled/Modulated Drug Delivery: Fresh Outlook and Future Perspectives

Porous inorganic nanostructured materials are widely used nowadays as drug delivery carriers due to their adventurous features: suitable architecture, large surface area and stability in the biological fluids. Among the different types of inorganic porous materials, silica, calcium carbonate, and calcium phosphate have received significant attention in the last decade. The use of porous inorganic materials as drug carriers for cancer therapy, gene delivery etc. has the potential to improve the life expectancy of the patients affected by the disease. The main goal of this review is to provide general information on the current state of the art of synthesis of the inorganic porous particles based on silica, calcium carbonate and calcium phosphate. Special focus is dedicated to the loading capacity, controllable release of drugs under internal biological stimuli (e.g., pH, redox, enzymes) and external noninvasive stimuli (e.g., light, magnetic field, and ultrasound). Moreover, the diverse compounds to deliver with silica, calcium carbonate and calcium phosphate particles, ranging from the commercial drugs to genetic materials are also discussed.

Effect of Temperature, pH, and Reaction Duration on Microbially Induced Calcite Precipitation

In this study, the amount of calcite precipitate resulting from microbially induced calcite precipitation (MICP) was estimated in order to determine the optimal conditions for precipitation. Two microbial species (Staphylococcus saprophyticus and Sporosarcina pasteurii) were tested by varying certain parameters such as (1) initial potential of hydrogen (pH) of urea-CaCl2 medium, (2) temperature during precipitation, and (3) the reaction duration. The pH values used for testing were 6, 7, 8, 9, and 10, the temperatures were 20, 30, 40, and 50 °C, and the reaction durations were 2, 3, and 4 days. Maximum calcite precipitation was observed at a pH of 7 and temperature of 30 °C. Most of the precipitation occurred within a reaction duration of 3 days. Under similar conditions, the amount of calcite precipitated by S. saprophyticus was estimated to be five times more than that by S. pasteurii. Both the species were sensitive to temperature; however, S. saprophyticus was less sensitive to pH and required a shorter reaction duration than S. pasteurii.

Biochemical process of ureolysis-based microbial CaCO3 precipitation and its application in self-healing concrete

Urea hydrolysis has already been considered as the most effective pathway for microbially induced CaCO₃ precipitation (MICP). The present work first studied the combination of several key factors including initial pH, temperature, and dosage of urea, which contribute to the biochemical process of MICP. Under an amiable condition of pH and temperature, the dosage of urea has a significant impact on the rate of urea degradation and CaCO₃ precipitation. A bacteria-based self-healing system was developed by loading healing agents on ceramsite carriers. The self-healing efficiency was evaluated by visual inspection on crack closure, compressive strength regain, and capillary water absorption. A preferable healing effectiveness was obtained when the bacteria and organic nutrients were co-immobilized in carriers. Image analysis showed that cracks up to 273 μm could be healed with a crack closure ratio of 86% in 28 days. The compressive strength regain increased 24% and the water absorption coefficient decreased 27% compared to the reference. The findings indicated a promising application of ureolysis-based MICP in restoring the mechanical properties and enhancing the durability of concrete.

Urease-aided calcium carbonate mineralization for engineering applications: A review

Inducing calcium carbonate precipitation is another important function of urease in nature. The process takes advantage of the supply of carbonate ions derived from urea hydrolysis and of an increase in pH generated by the reaction, effects that in the presence of Ca²⁺ ions lead to the precipitation of CaCO₃. Further to its importance in nature, if performed in a biomimetic manner, the urease-aided CaCO₃ mineralization offers enormous potential in innovative engineering applications as an eco-friendly technique operative under mild conditions, to be used for remediation and cementation/deposition in field applications in situ. These include among others, the strengthening and consolidation of soil/sand, the protection and restoration of stone and concrete structures, conservation of stone cultural heritage materials, cleaning waste- and groundwater of toxic metals and radionuclides, and plugging geological formations for the enhancement of oil recovery and geologic CO₂ sequestration. In view of the potential of this newly emerging interdisciplinary branch of engineering, this article presents the principles of urease-aided calcium carbonate mineralization apposed to other biomineralization processes, and reviews the advantages and limitations of the technique compared to the conventional techniques presently in use. Further, it presents areas of its existing and potential applications, notably in geotechnical, construction and environmental engineering, and its future perspectives.

Study of the Interaction of Eu3+ with Microbiologically Induced Calcium Carbonate Precipitates using TRLFS

The microbial induced biomineralization of calcium carbonate using the ureolytic bacterium Sporosarcina pasteurii in the presence of trivalent europium, a substitute for trivalent actinides, was investigated by time-resolved laser-induced fluorescence spectroscopy (TRLFS) and a variety of physicochemical techniques. Results showed that the bacterial-driven hydrolysis of urea provides favorable conditions for CaCO₃ precipitation and Eu³⁺ uptake due to subsequent increases in NH₄⁺ and pH in the local environment. Precipitate morphologies were characteristic of biogenically formed CaCO₃ and consistent with the respective mineral phase compositions. The formation of vaterite with some calcite was observed after 1 day, calcite with some vaterite after 1 week, and pure calcite after 2 weeks. The presence of organic material associated with the mineral was also identified and quantified. TRLFS was used to track the interaction and speciation of Eu³⁺ as a molecular probe with the mineral as a function of time. Initially, Eu³⁺ is incorporated into the vaterite phase, while during CaCO₃ phase transformation Eu³⁺ speciation changes resulting in several species incorporated in the calcite phase either substituting at the Ca²⁺ site or in a previously unidentified, low-symmetry site. Comparison of the biogenic precipitates to an abiotic sample shows mineral origin can affect Eu³⁺ speciation within the mineral.

Formations of calcium carbonate minerals by bacteria and its multiple applications

Biomineralization is a naturally occurring process in living organisms. In this review, we discuss microbially induced calcium carbonate precipitation (MICP) in detail. In the MICP process, urease plays a major role in urea hydrolysis by a wide variety of microorganisms capable of producing high levels of urease. We also elaborate on the different polymorphs and the role of calcium in the formation of calcite crystal structures using various calcium sources. Additionally, the environmental factors affecting the production of urease and carbonate precipitation are discussed. This MICP is a promising, eco-friendly alternative approach to conventional and current remediation technologies to solve environmental problems in multidisciplinary fields. Multiple applications of MICP such as removal of heavy metals and radionuclides, improve the quality of construction materials and sequestration of atmospheric CO₂ are discussed. In addition, we discuss other applications such as removal of calcium ions, PCBs and use of filler in rubber and plastics and fluorescent particles in stationary ink and stationary markers. MICP technology has become an efficient aspect of multidisciplinary fields. This report not only highlights the major strengths of MICP, but also discusses the limitations to application of this technology on a commercial scale.

Characterization of bacterial diversity associated with calcareous deposits and drip-waters, and isolation of calcifying bacteria from two Colombian mines

Bacterial carbonate precipitation has implications in geological processes and important biotechnological applications. Bacteria capable of precipitating carbonates have been isolated from different calcium carbonate deposits (speleothems) in caves, soil, freshwater and seawater around the world. However, the diversity of bacteria from calcareous deposits in Colombia, and their ability to precipitate carbonates, remains unknown. In this study, conventional microbiological methods and molecular tools, such as temporal temperature gradient electrophoresis (TTGE), were used to assess the composition of bacterial communities associated with carbonate deposits and drip-waters from two Colombian mines. A genetic analysis of these bacterial communities revealed a similar level of diversity, based on the number of bands detected using TTGE. The dominant phylogenetic affiliations of the bacteria, determined using 16S rRNA gene sequencing, were grouped into two phyla: Proteobacteria and Firmicutes. Within these phyla, seven genera were capable of precipitating calcium carbonates: Lysinibacillus, Bacillus, Strenotophomonas, Brevibacillus, Methylobacterium, Aeromicrobium and Acinetobacter. FTIR and SEM/EDX were used to analyze calcium carbonate crystals produced by isolated Acinetobacter gyllenbergii. The results showed that rhombohedral and angular calcite crystals with sizes of 90μm were precipitated. This research provides information regarding the presence of complex bacterial communities in secondary carbonate deposits from mines and their ability to precipitate calcium carbonate from calcareous deposits of Colombian mines.