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de Oliveira AR, de Toledo Rós B, Jardim R, Kotowski N, de Barros A, Pereira RHG, Almeida NF, Dávila AMR. A comparative genomics study of the microbiome and freshwater resistome in Southern Pantanal. Front Genet 2024; 15:1352801. [PMID: 38699231 PMCID: PMC11063290 DOI: 10.3389/fgene.2024.1352801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 04/01/2024] [Indexed: 05/05/2024] Open
Abstract
This study explores the resistome and bacterial diversity of two small lakes in the Southern Pantanal, one in Aquidauana sub-region, close to a farm, and one in Abobral sub-region, an environmentally preserved area. Shotgun metagenomic sequencing data from water column samples collected near and far from the floating macrophyte Eichhornia crassipes were used. The Abobral small lake exhibited the highest diversity and abundance of antibiotic resistance genes (ARGs), antibiotic resistance classes (ARGCs), phylum, and genus. RPOB2 and its resistance class, multidrug resistance, were the most abundant ARG and ARGC, respectively. Pseudomonadota was the dominant phylum across all sites, and Streptomyces was the most abundant genus considering all sites.
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Affiliation(s)
- André R. de Oliveira
- Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | - Rodrigo Jardim
- Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
| | - Nelson Kotowski
- Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | | | | | - Alberto M. R. Dávila
- Laboratório de Biologia Computacional e Sistemas, Instituto Oswaldo Cruz, Rio de Janeiro, Brazil
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Wang J, Long Y, Yu G, Wang G, Zhou Z, Li P, Zhang Y, Yang K, Wang S. A Review on Microorganisms in Constructed Wetlands for Typical Pollutant Removal: Species, Function, and Diversity. Front Microbiol 2022; 13:845725. [PMID: 35450286 PMCID: PMC9016276 DOI: 10.3389/fmicb.2022.845725] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 03/01/2022] [Indexed: 01/09/2023] Open
Abstract
Constructed wetlands (CWs) have been proven as a reliable alternative to traditional wastewater treatment technologies. Microorganisms in CWs, as an important component, play a key role in processes such as pollutant degradation and nutrient transformation. Therefore, an in-depth analysis of the community structure and diversity of microorganisms, especially for functional microorganisms, in CWs is important to understand its performance patterns and explore optimized strategies. With advances in molecular biotechnology, it is now possible to analyze and study microbial communities and species composition in complex environments. This review performed bibliometric analysis of microbial studies in CWs to evaluate research trends and identify the most studied pollutants. On this basis, the main functional microorganisms of CWs involved in the removal of these pollutants are summarized, and the effects of these pollutants on microbial diversity are investigated. The result showed that the main phylum involved in functional microorganisms in CWs include Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes. These functional microorganisms can remove pollutants from CWs by catalyzing chemical reactions, biodegradation, biosorption, and supporting plant growth, etc. Regarding microbial alpha diversity, heavy metals and high concentrations of nitrogen and phosphorus significantly reduce microbial richness and diversity, whereas antibiotics can cause large fluctuations in alpha diversity. Overall, this review can provide new ideas and directions for the research of microorganisms in CWs.
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Affiliation(s)
- Jianwu Wang
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Yuannan Long
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Guanlong Yu
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
- Engineering and Technical Center of Hunan Provincial Environmental Protection for River-Lake Dredging Pollution Control, Changsha, China
| | - Guoliang Wang
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Zhenyu Zhou
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Peiyuan Li
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Yameng Zhang
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Kai Yang
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
| | - Shitao Wang
- School of Hydraulic and Environmental Engineering, Changsha University of Science & Technology, Changsha, China
- Key Laboratory of Dongting Lake Aquatic Eco-Environmental Control and Restoration of Hunan Province, Changsha, China
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Removal of High-Strength Ammonia Nitrogen in Biofilters: Nitrifying Bacterial Community Compositions and Their Effects on Nitrogen Transformation. WATER 2020. [DOI: 10.3390/w12030712] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Increasing attention has been given to the treatment of livestock and poultry wastewater because of its high ammonium nitrogen (NH4+-N) content and low carbon/nitrogen ratio (C/N). Ceramic filter medium (CFM) and dewatered aluminum sludge (DAS), which are products from cast-off materials, are used as small-scale combined biological filters (CFM-DAS) for wastewater treatment. The high and stale removal efficiency of chemical oxygen demand (COD), NH4+-N, and total nitrogen (TN) in the DAS filter indicate that DAS plays a major role in pollutant removal. Although significant differences are found between the composition of nitrifying bacteria in CFM and DAS, the structures of nitrifying communities are evenly distributed in each layer of CFM or DAS irrespective of the running time. Microbial compositions are attributed to the comprehensive effect of various environmental factors such as pH and TN at effluents. In the DAS, Nitrosospira shows significant negative correlation with the concentrations of NH4+-N in effluents, whereas it has positive correlation with NO3−-N, and Nitrososphaera has a significant negative correlation with NO3−-N in effluents. Pearson correlation test reveals that certain genera may be used in estimating or predicting NH4+-N consumption and NO3−-N accumulation in CFM-DAS for treating sewage with a high NH4+-N content.
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