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Wang M, Wang H, Li K, Li X, Wang X, Wang Z. Review of CRISPR/Cas Systems on Detection of Nucleotide Sequences. Foods 2023; 12:foods12030477. [PMID: 36766007 PMCID: PMC9913930 DOI: 10.3390/foods12030477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 01/06/2023] [Accepted: 01/10/2023] [Indexed: 01/20/2023] Open
Abstract
Nowadays, with the rapid development of biotechnology, the CRISPR/Cas technology in particular has produced many new traits and products. Therefore, rapid and high-resolution detection methods for biotechnology products are urgently needed, which is extremely important for safety regulation. Recently, in addition to being gene editing tools, CRISPR/Cas systems have also been used in detection of various targets. CRISPR/Cas systems can be successfully used to detect nucleic acids, proteins, metal ions and others in combination with a variety of technologies, with great application prospects in the future. However, there are still some challenges need to be addressed. In this review, we will list some detection methods of genetically modified (GM) crops, gene-edited crops and single-nucleotide polymorphisms (SNPs) based on CRISPR/Cas systems, hoping to bring some inspiration or ideas to readers.
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Affiliation(s)
- Mengyu Wang
- Key Laboratory on Safety Assessment (Molecular) of Agri-GMO, Ministry of Agriculture and Rural Affairs, Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Haoqian Wang
- Development Center for Science and Technology, Ministry of Agriculture and Rural Affairs, Beijing 100176, China
| | - Kai Li
- Institute of Quality Standards and Testing Technology for Agro-Products, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xiaoman Li
- Key Laboratory on Safety Assessment (Molecular) of Agri-GMO, Ministry of Agriculture and Rural Affairs, Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Xujing Wang
- Key Laboratory on Safety Assessment (Molecular) of Agri-GMO, Ministry of Agriculture and Rural Affairs, Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Zhixing Wang
- Key Laboratory on Safety Assessment (Molecular) of Agri-GMO, Ministry of Agriculture and Rural Affairs, Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China
- Correspondence:
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Beheshti Zadeh R, Safaeian S, Moslemi E, Mosavi Nadushen R, Esfahani K. Monitoring of Infant Formula and Baby Food for the Pat and NOS Terminator of Genetically Modified Maize and Soybean by Real-time PCR in Iran. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH : IJPR 2022; 21:e126921. [PMID: 36060903 PMCID: PMC9420218 DOI: 10.5812/ijpr-126921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 02/10/2022] [Accepted: 04/03/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Soybean and maize are the most cultivated genetically modified (GM) plants. Because of the increase in the imports of GM products to Iran, infant formula and baby food, which is consumed by babies during their first month of life, can also contain soybean and maize. It has become fundamental to screen these types of products. OBJECTIVES The present study aimed to investigate the GM corn and soybean in baby food and infant formula using real-time polymerase chain reaction (PCR). METHODS A total of 60 baby food and infant formulas were collected randomly from the local drugstores in Tehran. Genomic DNA was extracted from all samples, then by real-time PCR detection, tested Pat/NOS. Internal control genes zein and lectin were used for maize and soybean, respectively. RESULTS Results showed that 5% of infant formulas and 5% of baby food, two Iranian and one imported baby food, and two imported and one Iranian infant formula were positive for pat. However, NOS was detected in none of the samples. The results showed positive results for the presence of the pat gene in the products without an appropriate label. CONCLUSIONS This article provides evidence of GM maize and soybean presence in baby food and infant formula in Iran.
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Affiliation(s)
- Ramin Beheshti Zadeh
- Department of Food Science, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Shila Safaeian
- Department of Food Science, North Tehran Branch, Islamic Azad University, Tehran, Iran
| | - Elham Moslemi
- Department of Biology, East Tehran Branch, Islamic Azad University, Tehran, Iran
| | | | - Kasra Esfahani
- Department of Plant Bioproducts, Institute of Agricultural Biotechnology (IAB), National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran
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Yang X, Liu D, Hu Y, Yan Z, Liu C, Feng G. Candidate gene ( PHA-E) and phytohemagglutinin content in snap bean ( Phaseolus vulgaris L.): an association study. BIOTECHNOL BIOTEC EQ 2021. [DOI: 10.1080/13102818.2021.1985613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
Affiliation(s)
- Xiaoxu Yang
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
| | - Dajun Liu
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
| | - Yanqiu Hu
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
| | - Zhishan Yan
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
| | - Chang Liu
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
| | - Guojun Feng
- Horticulture Department, College of Advanced Agriculture and Ecological Environment, Heilongjiang University, Harbin, Heilongjiang, PR China
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Venturelli GL, Bischoff JL, Scariot MC, Rossi GB, Arisi ACM. Applicability of quantitative polymerase chain reaction ( qPCR) assays for common bean authentication in processed food. Int J Food Sci Technol 2019. [DOI: 10.1111/ijfs.14041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Gustavo Luiz Venturelli
- CAL CCA UFSC, Molecular Biology Laboratory, Food Science and Technology Department Federal University of Santa Catarina Rod. Admar Gonzaga, 1346 88034‐001 Florianópolis Santa Catarina Brazil
| | - Joana Laura Bischoff
- CAL CCA UFSC, Molecular Biology Laboratory, Food Science and Technology Department Federal University of Santa Catarina Rod. Admar Gonzaga, 1346 88034‐001 Florianópolis Santa Catarina Brazil
| | - Mirella Christine Scariot
- CAL CCA UFSC, Molecular Biology Laboratory, Food Science and Technology Department Federal University of Santa Catarina Rod. Admar Gonzaga, 1346 88034‐001 Florianópolis Santa Catarina Brazil
| | - Gabriela Barbosa Rossi
- CAL CCA UFSC, Molecular Biology Laboratory, Food Science and Technology Department Federal University of Santa Catarina Rod. Admar Gonzaga, 1346 88034‐001 Florianópolis Santa Catarina Brazil
| | - Ana Carolina Maisonnave Arisi
- CAL CCA UFSC, Molecular Biology Laboratory, Food Science and Technology Department Federal University of Santa Catarina Rod. Admar Gonzaga, 1346 88034‐001 Florianópolis Santa Catarina Brazil
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Venturelli GL, da Silva KJ, Treml D, Navas PB, Vargas MO, Bischoff JL, de Faria JC, Arisi ACM. New plasmid calibrators for geminivirus-resistant (EMB-PV051-1 event) common bean (Phaseolus vulgaris L.) quantitation using simplex and duplex qPCR. FOOD BIOSCI 2018. [DOI: 10.1016/j.fbio.2018.10.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Valentim-Neto PA, Rossi GB, Anacleto KB, de Mello CS, Balsamo GM, Arisi ACM. Leaf proteome comparison of two GM common bean varieties and their non-GM counterparts by principal component analysis. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2016; 96:927-932. [PMID: 25760408 DOI: 10.1002/jsfa.7166] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2014] [Revised: 02/02/2015] [Accepted: 03/07/2015] [Indexed: 06/04/2023]
Abstract
BACKGROUND A genetically modified (GM) common bean event, namely Embrapa 5.1, was approved for commercialization in Brazil. The present work aimed to use principal component analysis (PCA) to compare the proteomic profile of this GM common bean and its non-GM counterpart. RESULTS Seedlings from four Brazilian common bean varieties were grown under controlled environmental conditions. Leaf proteomic profiles were analyzed by two-dimensional gel electrophoresis (2DE). First, a comparison among 12 gels from four common bean varieties was performed by PCA using volume percentage of 198 matched spots, presented in all gels. The first two principal components (PC) accounted for 46.8% of total variation. Two groups were clearly separated by the first component: Pérola and GM Pérola from Pontal and GM Pontal. Secondly, another comparison among six gels from the same variety GM and its non-GM counterpart was performed by PCA; in this case it was possible to distinguish GM and non-GM. CONCLUSION Separation between leaf proteomic profile of GM common bean variety and its counterpart was observed only when they were compared in pairs. These results showed higher similarity between GM variety and its counterpart than between two common bean varieties. PCA is a useful tool to compare proteomes of GM and non-GM plant varieties.
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Affiliation(s)
- Pedro A Valentim-Neto
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
| | - Gabriela B Rossi
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
| | - Kelly B Anacleto
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
| | - Carla S de Mello
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
| | - Geisi M Balsamo
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
| | - Ana Carolina M Arisi
- Food Science and Technology Department, Federal University of Santa Catarina, 88034-001, Florianópolis, SC, Brazil
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Treml D, Venturelli GL, Brod FCA, Faria JC, Arisi ACM. Development of an event-specific hydrolysis probe quantitative real-time polymerase chain reaction assay for Embrapa 5.1 genetically modified common bean (Phaseolus vulgaris). JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:11994-12000. [PMID: 25437743 DOI: 10.1021/jf503928m] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A genetically modified (GM) common bean event, namely Embrapa 5.1, resistant to the bean golden mosaic virus (BGMV), was approved for commercialization in Brazil. Brazilian regulation for genetically modified organism (GMO) labeling requires that any food containing more than 1% GMO be labeled. The event-specific polymerase chain reaction (PCR) method has been the primary trend for GMO identification and quantitation because of its high specificity based on the flanking sequence. This work reports the development of an event-specific assay, named FGM, for Embrapa 5.1 detection and quantitation by use of SYBR Green or hydrolysis probe. The FGM assay specificity was tested for Embrapa 2.3 event (a noncommercial GM common bean also resistant to BGMV), 46 non-GM common bean varieties, and other crop species including maize, GM maize, soybean, and GM soybean. The FGM assay showed high specificity to detect the Embrapa 5.1 event. Standard curves for the FGM assay presented a mean efficiency of 95% and a limit of detection (LOD) of 100 genome copies in the presence of background DNA. The primers and probe developed are suitable for the detection and quantitation of Embrapa 5.1.
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Affiliation(s)
- Diana Treml
- Departamento de Ciência e Tecnologia de Alimentos, Centro de Ciências Agrárias, Universidade Federal de Santa Catarina , Rod. Admar Gonzaga 1346, 88034-001 Florianópolis, Santa Catarina, Brazil
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