Isolation and characterization of the major histocompatibility complex DQA1 and DQA2 genes in gayal (Bos frontalis)

Identification of novel allelic patterns and evolutionary lineage of BoLA MHC class II DQA locus in indicine and taurine cattle

Among different cattle types, Bos indicus are known for their ability to better resist the tropical microbial infections comparatively, wherein MHC molecules play a significant role. In this study allelic diversity at MHC locus, DQA of Bos indicus, Bos taurus and crossbred of taurine-indicus has been explored to understand the possible role of MHC region in differential immune response. Thirty nine different DQA alleles were identified, out of which 14 were novel, along with documentation of duplication of DQA alleles. Indicus cattle population presented diverse types of DQA alleles compared to crossbred and exotic. Translated amino acid sequence analysis indicated, codon 64 and 50 of peptide binding sites being highly polymorphic and most of the indicus cattle presented alanine and arginine amino acid at position 64 and 50. Within breed genetic variation found to be higher than between breeds. Because of their ability to bind and subsequently respond to a wide array of antigens, the newly identified DQA alleles with high diversity present in the form of duplicated haplotypes in different combinations in cattle populations provided significant insights into probable role of this MHC locus in better tropical disease combating ability and genetic fitness of indicus cattle.

Agrobiodiversity and agroecological practices in 'jhumscape' of the Eastern Himalayas: don't throw the baby out with the bathwater

The values and roles of biodiversity at the grassroots level get little attention and are usually ignored, despite mounting evidence that effective relationships between biodiversity and indigenous people are critical to both ecological integrity and rural survival. 'Jhumscape' (the landscape of shifting cultivation) can contribute a great deal to enriching agrobiodiversity and ensuring food security, but this system of cultivation has been mostly neglected. The objective of the present study was twofold: (1) to quantify the agrobiodiversity of a jhumscape in the Eastern Himalayas, especially its contribution to food and nutritional security, and (2) to examine the jhum practices in view of the agroecological principles recently proposed by the Food and Agricultural Organization. Applying mixed-method research and using primary data from 97 households representing eleven villages, transect walks, and interviews of key informants, the plant diversity maintained in a traditional jhum system by the indigenous people was seen to comprise of 37 crops including many landraces and four non-descript breeds of livestock. The food basket was supplemented with wild edible plants collected from fringes of forests and fallow lands that are a part of the jhumscape. Diversity in food groups and the share of expenditure on food in the total budget indicates that the indigenous people are secure in terms of food and nutrition. Jhum agroecological practices such as zero tillage and organic mixed-crops farming based on traditional ecological knowledge helps to maintain a high level of agrobiodiversity. Using biodiversity more effectively for agroecological transition does not mean merely returning to traditional practices but requires a deeper understanding of how agrobiodiversity contributes to better nutrition, greater food security, and sustainability. Although some principles and local practices related to jhum are applicable globally, others may be specific to the region and the culture.

Molecular Cloning and Bioinformatics Analysis of DQA Gene from Mink (Neovison vison)

In the present study, we cloned, sequenced, and explored the structural and functional characteristics of the major histocompatibility complex (MHC)-DQA gene from mink (Neovison vison) for the first time. The full-length sequence of DQA gene was 1147-bp-long, contained a coding region of 768-bp, which was predicted to encoding 255 amino acid residues. The comparison between DQA from mink (Neovison vison) and other MHC-DQA molecules from different animal species showed that nucleotide and encoded amino acid sequences of the mink DQA gene exhibited high similarity with the ferret (Mustela pulourius furo). Phylogenetic analysis revealed that mink (Neovison vison) DQA is grouped with that of ferret (Mustela pulourius furo). The cloned sequence contained a 23-amino acid NH₂-terminal signal sequence with the signal peptide cutting site located in amino acids 23–24, and had three Asn-Xaa-Ser/Thr sequons. Three cysteine residues were also identified (Cys-85, Cys-121, and Cys-138). The 218 to 240 amino acids were predicted to be the transmembrane domains. The prediction of the secondary structure revealed three α-helixes and fourteen β-sheets in Neovison vison DQA protein, while random coil was a major pattern. In this study, the whole CDS sequence of Neovison vison DQA gene was successfully cloned, which was valuable for exploring the function and antiviral molecular mechanisms underlying the molecule. The findings of the present study have laid the foundation for the disease resistance and breeding of mink.