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Gambardella N, Costa J, Martins BM, Folhas D, Ribeiro AP, Hintelmann H, Canário J, Magalhães C. The role of prokaryotic mercury methylators and demethylators in Canadian Arctic thermokarst lakes. Sci Rep 2025; 15:7173. [PMID: 40021694 PMCID: PMC11871057 DOI: 10.1038/s41598-025-89438-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2024] [Accepted: 02/05/2025] [Indexed: 03/03/2025] Open
Abstract
Permafrost soils are critical reservoirs for mercury (Hg), with the thawing process leading to the release of this element into the environment, posing significant environmental risks. Of particular concern is the methylated form of mercury, monomethylmercury (MMHg), known for its adverse effects on Human health. Microbial communities play a pivotal role in the formation of MMHg by facilitating Hg methylation and in the demethylation of MMHg, slowing the crossing of toxic threshold concentration in the environment. However, the specific microbes involved still need to be understood. This study aimed to identify the microbial drivers behind changes in Hg speciation (MMHg and Hg) in permafrost thaw lakes and assess the significance of the biotic component in Hg biogeochemistry. Sediment samples from two thermokarst lakes in the Canadian sub-Arctic were collected during the winter and summer of 2022. Gene-centric metagenomics using whole-genome sequencing (WGS) was employed to identify key genes involved in mercury methylation (hgcA and hgcB) and demethylation (merA and merB), supported by qPCR analyses. A seasonal decline in microbial diversity, involved in the Hg methylation, and hgcA gene coverage was observed from winter to summer, mirroring patterns in mercury methylation rates. Notably, hgcA sequences were significantly more abundant than merAB sequences, with contrasting seasonal trends. These results indicate a seasonal shift in the microbial community, transitioning from a dominance of mercury methylation in winter to a predominance of mercury demethylation in summer. Environmental drivers of these dynamics were integrated into a conceptual model. This study provide new insights on the microbial processes influencing the Hg cycle in Arctic permafrost undergoing degradation.
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Affiliation(s)
- Nicola Gambardella
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
- Faculty of Sciences, University of Porto, Porto, Portugal
| | - Joana Costa
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
| | - Beatriz Malcata Martins
- Centro de Química Estrutural, Institute of Molecular Sciences and Department of Chemical Engineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal
| | - Diogo Folhas
- Centro de Química Estrutural, Institute of Molecular Sciences and Department of Chemical Engineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal
| | - Ana Patrícia Ribeiro
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal
- Faculty of Sciences, University of Porto, Porto, Portugal
| | - Holger Hintelmann
- Centro de Química Estrutural, Institute of Molecular Sciences and Department of Chemical Engineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal
- Water Quality Centre, Trent University, Peterborough, Canada
| | - João Canário
- Centro de Química Estrutural, Institute of Molecular Sciences and Department of Chemical Engineering, Instituto Superior Técnico, University of Lisbon, Lisbon, Portugal
| | - Catarina Magalhães
- Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), University of Porto, Porto, Portugal.
- Faculty of Sciences, University of Porto, Porto, Portugal.
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Saha BK, Roy V, Saha J, Chatterjee A, Pal A. Study of mercury resistance and Fourier transform infrared spectroscopy-based metabolic profiling of a potent Bacillus tropicus strain from forest soil. J Basic Microbiol 2024; 64:e2300351. [PMID: 37847888 DOI: 10.1002/jobm.202300351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 09/01/2023] [Accepted: 10/07/2023] [Indexed: 10/19/2023]
Abstract
Mercury (Hg) is a highly toxic heavy metal and Hg-resistant indigenous bacterial isolates may offer a green and cost-effective bioremediation strategy to counter Hg contamination. In this study, a potent Hg-resistant bacterium was isolated from the forest soil of a bird sanctuary. Identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry depicted the isolate as a strain of Bacillus tropicus, validated by morphological, biochemical, and molecular studies. The isolate demonstrated biological Hg removal efficiency and capacity of 50.67% and 19.76 mg g-1 , respectively. The plasmid borne resistance determinant, merA, encoding mercuric reductase, was detected in the bacterium endowing it with effective Hg volatilization and resistance capability. A Fourier-transform infrared spectroscopic comparative metabolic profiling revealed the involvement of various functional groups like -COOH, -CH2 , -OH, PO4 - and so on, resulting in differential spectral patterns of the bacterium both in control and Hg-exposed situations. A temporal variance in metabolic signature was also observed during the early and mid-log phase of growth in the presence of Hg. The bacterium described in this study is the first indigenous Hg-resistant strain isolated from the Uttar Dinajpur region, which could be further explored and exploited as a potent bioresource for Hg remediation.
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Affiliation(s)
- Barnan K Saha
- Microbiology and Computational Biology Laboratory, Department of Botany, Raiganj University, Raiganj, Uttar Dinajpur, West Bengal, India
| | - Vivek Roy
- Microbiology and Computational Biology Laboratory, Department of Botany, Raiganj University, Raiganj, Uttar Dinajpur, West Bengal, India
| | - Jayanti Saha
- Microbiology and Computational Biology Laboratory, Department of Botany, Raiganj University, Raiganj, Uttar Dinajpur, West Bengal, India
- Department of Botany, Acharya Prafulla Chandra Roy Government College, Himachal Bihar, Matigara, Siliguri, West Bengal, India
| | - Abhik Chatterjee
- Design, Synthesis & Simulation Laboratory, Department of Chemistry, Raiganj University, Raiganj, Uttar Dinajpur, West Bengal, India
| | - Ayon Pal
- Microbiology and Computational Biology Laboratory, Department of Botany, Raiganj University, Raiganj, Uttar Dinajpur, West Bengal, India
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Song W, Xiong H, Qi R, Wang S, Yang Y. Effect of salinity and algae biomass on mercury cycling genes and bacterial communities in sediments under mercury contamination: Implications of the mercury cycle in arid regions. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 269:116141. [PMID: 33290948 DOI: 10.1016/j.envpol.2020.116141] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 10/22/2020] [Accepted: 11/19/2020] [Indexed: 06/12/2023]
Abstract
Lakes in arid regions are experiencing mercury pollution via air deposition and surface runoff, posing a threat to ecosystem safety and human health. Furthermore, salinity and organic matter input could influence the mercury cycle and composition of bacterial communities in the sediment. In this study, the effects of salinity and algae biomass as an important organic matter on the genes (merA and hgcA) involved in the mercury cycle under mercury contamination were investigated. Archaeal merA and hgcA were not detected in sediments of lake microcosms, indicating that bacteria rather than archaea played a crucial role in mercury reduction and methylation. The high content of mercury (300 ng g-1) could reduce the abundance of both merA and hgcA. The effects of salinity and algae biomass on mercury cycling genes depended on the gene type and dose. A higher input of algae biomass (250 mg L-1) led to an increase of merA abundance, but a decrease of hgcA abundance. All high inputs of mercury, salinity, and algae biomass decreased the richness and diversity of bacterial communities in sediment. Further analysis indicated that higher mercury (300 ng g-1) led to an increased relative abundance of mercury methylators, such as Ruminococcaceae, Bacteroidaceae, and Veillonellaceae. Under saline conditions (10 and 30 g L-1), the richness of specific bacteria associated with mercury reduction (Halomonadaceae) and methylation (Syntrophomonadaceae) increased compared to the control. The input of algae biomass led to an increase in the specific bacterial communities associated with the mercury cycle and the richness of bacteria involved in the decomposition of organic matter. These results provide insight into mercury cycle-related genes and bacterial communities in the sediments of lakes in arid regions.
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Affiliation(s)
- Wenjuan Song
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; University of Chinese Academy of Sciences, Beijing, 100049, China.
| | - Heigang Xiong
- College of Applied Arts and Science of Beijing Union University, Beijing, 100191, China
| | - Ran Qi
- Command Center of Comprehensive Natural Resources Survey, China Geological Survey, Beijing, 100055, China; Institute of Geological Survey, China University of Geosciences, Wuhan, 430074, China
| | - Shuzhi Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | - Yuyi Yang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China
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Sreedharan SM, Singh SP, Singh R. Flower Shaped Gold Nanoparticles: Biogenic Synthesis Strategies and Characterization. Indian J Microbiol 2019; 59:321-327. [PMID: 31388209 PMCID: PMC6646626 DOI: 10.1007/s12088-019-00804-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2019] [Accepted: 04/11/2019] [Indexed: 11/30/2022] Open
Abstract
Microbes can serve as mediators for the fabrication of complicated nano-structures, obviating the tedious and time-consuming methods of synthesis. The shape of a nanoparticle has a very prominent role in defining the functionality in prospective arenas. So, the flower shaped nanoparticles are in focus nowadays due to their enhanced electrocatalytic and optical properties as compared to the spherical ones. We present the biosynthesis of flower shaped gold nanoparticles by Bacillus subtilis RSB64 and process parameters optimization using central composite design. The two well-separated scattering spectra showing absorption peaks at 540 nm and 750 nm indicate the presence of anisotropic gold nanoparticles and the results were corroborated by transmission electron microscopy analysis. The presence of gold nanoparticles was further confirmed by energy dispersive X-ray studies. The functional groups responsible for the stability of gold nanoparticles were predicted by Fourier transform infrared spectroscopy. The gold nanoparticles biosynthesis were collective effects of three experimental process parameters viz pH, temperature and precursor concentration. These three parameters were statistically optimized wherein pH 11.0, substrate concentration 1:1 (v/v) and temperature of 50 °C resulted in the synthesis of stable flower shaped gold nanoparticles of 50 nm size. The results indicated the tailored biosynthesis of gold nanoparticles with a flower like morphology by multi process parameter analysis to finalize robust conditions for the synthesis using B. subtilis RSB64. These gold nanoflowers demonstrate increased surface area efficiency/reactivity and could be employed for sustained and controlled delivery of drugs.
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Affiliation(s)
- Smitha Mony Sreedharan
- Amity Institute of Microbial Biotechnology, Amity University, Sector-125, Noida, Uttar Pradesh 201313 India
| | - Surinder Pal Singh
- National Physical Laboratory, Dr. K.S. Krishnan Marg, New Delhi, 110012 India
| | - Rajni Singh
- Amity Institute of Microbial Biotechnology, Amity University, Sector-125, Noida, Uttar Pradesh 201313 India
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Bioconversion of Hg and Molecular Characterization of merA and merB Gene in a Clone Constructed by Culture Independent Technique. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2019. [DOI: 10.22207/jpam.13.1.55] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Bioremediation of Mercury through Encapsulation of the Clone Carrying Meroperon. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2019. [DOI: 10.22207/jpam.13.1.62] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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