Investigation of pulmonary nodule classification using multi-scale residual network enhanced with 3DGAN-synthesized volumes

Data augmentation for medical imaging: A systematic literature review

Recent advances in Deep Learning have largely benefited from larger and more diverse training sets. However, collecting large datasets for medical imaging is still a challenge due to privacy concerns and labeling costs. Data augmentation makes it possible to greatly expand the amount and variety of data available for training without actually collecting new samples. Data augmentation techniques range from simple yet surprisingly effective transformations such as cropping, padding, and flipping, to complex generative models. Depending on the nature of the input and the visual task, different data augmentation strategies are likely to perform differently. For this reason, it is conceivable that medical imaging requires specific augmentation strategies that generate plausible data samples and enable effective regularization of deep neural networks. Data augmentation can also be used to augment specific classes that are underrepresented in the training set, e.g., to generate artificial lesions. The goal of this systematic literature review is to investigate which data augmentation strategies are used in the medical domain and how they affect the performance of clinical tasks such as classification, segmentation, and lesion detection. To this end, a comprehensive analysis of more than 300 articles published in recent years (2018-2022) was conducted. The results highlight the effectiveness of data augmentation across organs, modalities, tasks, and dataset sizes, and suggest potential avenues for future research.

Towards Machine Learning-Aided Lung Cancer Clinical Routines: Approaches and Open Challenges

Advancements in the development of computer-aided decision (CAD) systems for clinical routines provide unquestionable benefits in connecting human medical expertise with machine intelligence, to achieve better quality healthcare. Considering the large number of incidences and mortality numbers associated with lung cancer, there is a need for the most accurate clinical procedures; thus, the possibility of using artificial intelligence (AI) tools for decision support is becoming a closer reality. At any stage of the lung cancer clinical pathway, specific obstacles are identified and “motivate” the application of innovative AI solutions. This work provides a comprehensive review of the most recent research dedicated toward the development of CAD tools using computed tomography images for lung cancer-related tasks. We discuss the major challenges and provide critical perspectives on future directions. Although we focus on lung cancer in this review, we also provide a more clear definition of the path used to integrate AI in healthcare, emphasizing fundamental research points that are crucial for overcoming current barriers.

Generative Adversarial Networks in Medical Image augmentation: A review

OBJECT

With the development of deep learning, the number of training samples for medical image-based diagnosis and treatment models is increasing. Generative Adversarial Networks (GANs) have attracted attention in medical image processing due to their excellent image generation capabilities and have been widely used in data augmentation. In this paper, a comprehensive and systematic review and analysis of medical image augmentation work are carried out, and its research status and development prospects are reviewed.

METHOD

This paper reviews 105 medical image augmentation related papers, which mainly collected by ELSEVIER, IEEE Xplore, and Springer from 2018 to 2021. We counted these papers according to the parts of the organs corresponding to the images, and sorted out the medical image datasets that appeared in them, the loss function in model training, and the quantitative evaluation metrics of image augmentation. At the same time, we briefly introduce the literature collected in three journals and three conferences that have received attention in medical image processing.

RESULT

First, we summarize the advantages of various augmentation models, loss functions, and evaluation metrics. Researchers can use this information as a reference when designing augmentation tasks. Second, we explore the relationship between augmented models and the amount of the training set, and tease out the role that augmented models may play when the quality of the training set is limited. Third, the statistical number of papers shows that the development momentum of this research field remains strong. Furthermore, we discuss the existing limitations of this type of model and suggest possible research directions.

CONCLUSION

We discuss GAN-based medical image augmentation work in detail. This method effectively alleviates the challenge of limited training samples for medical image diagnosis and treatment models. It is hoped that this review will benefit researchers interested in this field.

Weakly supervised learning for classification of lung cytological images using attention-based multiple instance learning

In cytological examination, suspicious cells are evaluated regarding malignancy and cancer type. To assist this, we previously proposed an automated method based on supervised learning that classifies cells in lung cytological images as benign or malignant. However, it is often difficult to label all cells. In this study, we developed a weakly supervised method for the classification of benign and malignant lung cells in cytological images using attention-based deep multiple instance learning (AD MIL). Images of lung cytological specimens were divided into small patch images and stored in bags. Each bag was then labeled as benign or malignant, and classification was conducted using AD MIL. The distribution of attention weights was also calculated as a color map to confirm the presence of malignant cells in the image. AD MIL using the AlexNet-like convolutional neural network model showed the best classification performance, with an accuracy of 0.916, which was better than that of supervised learning. In addition, an attention map of the entire image based on the attention weight allowed AD MIL to focus on most malignant cells. Our weakly supervised method automatically classifies cytological images with acceptable accuracy based on supervised learning without complex annotations.

A review of medical image data augmentation techniques for deep learning applications

Research in artificial intelligence for radiology and radiotherapy has recently become increasingly reliant on the use of deep learning-based algorithms. While the performance of the models which these algorithms produce can significantly outperform more traditional machine learning methods, they do rely on larger datasets being available for training. To address this issue, data augmentation has become a popular method for increasing the size of a training dataset, particularly in fields where large datasets aren't typically available, which is often the case when working with medical images. Data augmentation aims to generate additional data which is used to train the model and has been shown to improve performance when validated on a separate unseen dataset. This approach has become commonplace so to help understand the types of data augmentation techniques used in state-of-the-art deep learning models, we conducted a systematic review of the literature where data augmentation was utilised on medical images (limited to CT and MRI) to train a deep learning model. Articles were categorised into basic, deformable, deep learning or other data augmentation techniques. As artificial intelligence models trained using augmented data make their way into the clinic, this review aims to give an insight to these techniques and confidence in the validity of the models produced.

Generative adversarial network based data augmentation to improve cervical cell classification model

The survival rate of cervical cancer can be improved by the early screening. However, the screening is a heavy task for pathologists. Thus, automatic cervical cell classification model is proposed to assist pathologists in screening. In cervical cell classification, the number of abnormal cells is small, meanwhile, the ratio between the number of abnormal cells and the number of normal cells is small too. In order to deal with the small sample and class imbalance problem, a generative adversarial network (GAN) trained by images of abnormal cells is proposed to obtain the generated images of abnormal cells. Using both generated images and real images, a convolutional neural network (CNN) is trained. We design four experiments, including 1) training the CNN by under-sampled images of normal cells and the real images of abnormal cells, 2) pre-training the CNN by other dataset and fine-tuning it by real images of cells, 3) training the CNN by generated images of abnormal cells and the real images, 4) pre-training the CNN by generated images of abnormal cells and fine-tuning it by real images of cells. Comparing these experimental results, we find that 1) GAN generated images of abnormal cells can effectively solve the problem of small sample and class imbalance in cervical cell classification; 2) CNN model pre-trained by generated images and fine-tuned by real images achieves the best performance whose AUC value is 0.984.

Deep Neural Networks for Dental Implant System Classification

In this study, we used panoramic X-ray images to classify and clarify the accuracy of different dental implant brands via deep convolutional neural networks (CNNs) with transfer-learning strategies. For objective labeling, 8859 implant images of 11 implant systems were used from digital panoramic radiographs obtained from patients who underwent dental implant treatment at Kagawa Prefectural Central Hospital, Japan, between 2005 and 2019. Five deep CNN models (specifically, a basic CNN with three convolutional layers, VGG16 and VGG19 transfer-learning models, and finely tuned VGG16 and VGG19) were evaluated for implant classification. Among the five models, the finely tuned VGG16 model exhibited the highest implant classification performance. The finely tuned VGG19 was second best, followed by the normal transfer-learning VGG16. We confirmed that the finely tuned VGG16 and VGG19 CNNs could accurately classify dental implant systems from 11 types of panoramic X-ray images.