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Filippovich SY, Isakova EP, Gessler NN, Deryabina YI. Advances in immobilization of phytases and their application. BIORESOURCE TECHNOLOGY 2023; 379:129030. [PMID: 37037335 DOI: 10.1016/j.biortech.2023.129030] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 04/03/2023] [Accepted: 04/05/2023] [Indexed: 05/03/2023]
Abstract
The review describes the advances in the phytase immobilization for the past decade and their biotechnological applications. Different approaches for phytase immobilization are described including the process using organic and inorganic matrices and microbial cells, as well as nanostructures of various nature. Moreover, the immobilization of phytase-producing microbial cells and the use of cross-linked phytase aggregates have been under consideration. A detailed classification of various carriers for immobilization of phytases and the possibility of their applications are presented. A particular attention is drawn to a breakthrough approach of biotechnological significance to the design of microencapsulation of bacterial phytase from Obesumbacterium proteus in the recombinant extremophile of Yarrowia lipolytica.
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Affiliation(s)
- Svetlana Yu Filippovich
- Bach Institute of Biochemistry, Fundamentals of Biotechnology Federal Research Center, Russian Academy of Sciences, Moscow 119071, Russia.
| | - Elena P Isakova
- Bach Institute of Biochemistry, Fundamentals of Biotechnology Federal Research Center, Russian Academy of Sciences, Moscow 119071, Russia.
| | - Natalia N Gessler
- Bach Institute of Biochemistry, Fundamentals of Biotechnology Federal Research Center, Russian Academy of Sciences, Moscow 119071, Russia.
| | - Yulia I Deryabina
- Bach Institute of Biochemistry, Fundamentals of Biotechnology Federal Research Center, Russian Academy of Sciences, Moscow 119071, Russia.
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Rakhmanova TI, Sekova VY, Gessler NN, Isakova EP, Deryabina YI, Popova TN, Shurubor YI, Krasnikov BF. Kinetic and Regulatory Properties of Yarrowia lipolytica Aconitate Hydratase as a Model-Indicator of Cell Redox State under pH Stress. Int J Mol Sci 2023; 24:ijms24087670. [PMID: 37108831 PMCID: PMC10143702 DOI: 10.3390/ijms24087670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 04/19/2023] [Accepted: 04/20/2023] [Indexed: 04/29/2023] Open
Abstract
This paper presents an analysis of the regulation activity of the partially purified preparations of cellular aconitate hydratase (AH) on the yeast Yarrowia lipolytica cultivated at extreme pH. As a result of purification, enzyme preparations were obtained from cells grown on media at pH 4.0, 5.5, and 9.0, purified by 48-, 46-, and 51-fold and having a specific activity of 0.43, 0.55 and 0.36 E/mg protein, respectively. The kinetic parameters of preparations from cells cultured at extreme pH demonstrated: (1) an increase in the affinity for citrate and isocitrate; and (2) a shift in the pH optima to the acidic and alkaline side in accordance with the modulation of the medium pH. The regulatory properties of the enzyme from cells subjected to alkaline stress showed increased sensitivity to Fe2+ ions and high peroxide resistance. Reduced glutathione (GSH) stimulated AH, while oxidized glutathione (GSSG) inhibited AH. A more pronounced effect of both GSH and GSSG was noted for the enzyme obtained from cells grown at pH 5.5. The data obtained provide new approaches to the use of Y. lipolytica as a model of eukaryotic cells demonstrating the development of a stress-induced pathology and to conducting a detailed analysis of enzymatic activity for its correction.
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Affiliation(s)
- Tatyana I Rakhmanova
- Department of Medical Biochemistry and Microbiology, Biology and Soil Science Faculty, Voronezh State University, Universitetskaya pl., 1, 394000 Voronezh, Russia
| | - Varvara Yu Sekova
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, 119071 Moscow, Russia
| | - Natalya N Gessler
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, 119071 Moscow, Russia
| | - Elena P Isakova
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, 119071 Moscow, Russia
| | - Yulia I Deryabina
- A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, 119071 Moscow, Russia
| | - Tatyana N Popova
- Department of Medical Biochemistry and Microbiology, Biology and Soil Science Faculty, Voronezh State University, Universitetskaya pl., 1, 394000 Voronezh, Russia
| | - Yevgeniya I Shurubor
- Centre for Strategic Planning of FMBA of the Russian Federation, Pogodinskaya St., Bld.10, 119121 Moscow, Russia
| | - Boris F Krasnikov
- Centre for Strategic Planning of FMBA of the Russian Federation, Pogodinskaya St., Bld.10, 119121 Moscow, Russia
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Isakova EP, Gessler NN, Deryabina YI. Comparative Assay of Phytase Activity in Yarrowia lipolytica Strains Transformed with the Neutrophilic Phytase Genome from Obesumbacterium proteus in Batch Cultivation. APPL BIOCHEM MICRO+ 2022. [DOI: 10.1134/s0003683822100088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/27/2023]
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Sekova VY, Dergacheva DI, Isakova EP, Gessler NN, Tereshina VM, Deryabina YI. Soluble Sugar and Lipid Readjustments in the Yarrowia lipolytica Yeast at Various Temperatures and pH. Metabolites 2019; 9:metabo9120307. [PMID: 31861165 PMCID: PMC6950712 DOI: 10.3390/metabo9120307] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Revised: 12/13/2019] [Accepted: 12/15/2019] [Indexed: 12/20/2022] Open
Abstract
Microorganisms cope with a wide range of environmental challenges using different mechanisms. Their ability to prosper at extreme ambient pH and high temperatures has been well reported, but the adaptation mechanism often remains unrevealed. In this study, we addressed the dynamics of lipid and sugar profiles upon different cultivation conditions. The results showed that the cells grown at various pH and optimal temperature contained mannitol as the major cytosol sugar alcohol. The elevated temperature of 38 °C led to a two- to three-fold increase in total cytosol sugars with concurrent substitution of mannitol for trehalose. Lipid composition in the cells at optimal temperature changed insignificantly at any pH tested. The increase in the temperature caused some drop in the storage and membrane lipid levels, remarkable changes in their composition, and the degree of unsaturated fatty acids. It was shown that the fatty acid composition of some membrane phospholipids varied considerably at changing pH and temperature values. The data showed a pivotal role and flexibility of the sugar and lipid composition of Y. lipolytica W29 in adaptation to unfavorable environmental conditions.
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Affiliation(s)
- Varvara Yu Sekova
- A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, bld 33-2, Leninsly Prospect, Moscow 119071, Russia; (D.I.D.); (N.N.G.); (Y.I.D.)
- Correspondence: (V.Y.S.); (E.P.I.)
| | - Daria I. Dergacheva
- A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, bld 33-2, Leninsly Prospect, Moscow 119071, Russia; (D.I.D.); (N.N.G.); (Y.I.D.)
| | - Elena P. Isakova
- A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, bld 33-2, Leninsly Prospect, Moscow 119071, Russia; (D.I.D.); (N.N.G.); (Y.I.D.)
- Correspondence: (V.Y.S.); (E.P.I.)
| | - Natalya N. Gessler
- A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, bld 33-2, Leninsly Prospect, Moscow 119071, Russia; (D.I.D.); (N.N.G.); (Y.I.D.)
| | - Vera M. Tereshina
- Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Leninsky Ave. 33/2, Moscow 119071, Russia;
| | - Yulia I. Deryabina
- A.N. Bach Institute of Biochemistry, Russian Academy of Sciences, bld 33-2, Leninsly Prospect, Moscow 119071, Russia; (D.I.D.); (N.N.G.); (Y.I.D.)
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Serdyuk EG, Isakova EP, Gessler NN, Trubnikova EV, Antipov AN, Deryabina YI. Activity of Neutral Phytase from Obesumbacterium proteus in Recombinant Strains of Yarrowia lipolytica under Cultivation on Low-Grade Vegetable Substrate. APPL BIOCHEM MICRO+ 2019. [DOI: 10.1134/s0003683819050120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Isakova EP, Serdyuk EG, Gessler NN, Trubnikova EV, Biryukova YK, Epova EY, Deryabina YI, Nikolaev AV. A New Recombinant Strain of Yarrowia lipolytica Producing Encapsulated Phytase from Obesumbacterium proteus. DOKL BIOCHEM BIOPHYS 2018; 481:201-204. [PMID: 30168059 DOI: 10.1134/s1607672918040063] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Indexed: 11/22/2022]
Abstract
A new recombinant strain of Yarrowia lipolytica synthesizing encapsulated highly thermostable phytase of Obesumbacterium proteus, which is recommended for use as a premix component of feed compositions in animal husbandry, was obtained.
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Affiliation(s)
- E P Isakova
- Bach Institute of Biochemistry, Federal Research Center "Fundamental Principles of Biotechnology,", Russian Academy of Sciences, Moscow, 119071, Russia
| | - E G Serdyuk
- Bach Institute of Biochemistry, Federal Research Center "Fundamental Principles of Biotechnology,", Russian Academy of Sciences, Moscow, 119071, Russia
| | - N N Gessler
- Bach Institute of Biochemistry, Federal Research Center "Fundamental Principles of Biotechnology,", Russian Academy of Sciences, Moscow, 119071, Russia
| | | | | | - E Y Epova
- Kursk State University, Kursk, 305000, Russia
| | - Y I Deryabina
- Bach Institute of Biochemistry, Federal Research Center "Fundamental Principles of Biotechnology,", Russian Academy of Sciences, Moscow, 119071, Russia.
| | - A V Nikolaev
- Schmidt Institute of Physics of the Earth, Russian Academy of Sciences, Moscow, 123242, Russia
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