Genetics and mapping of seed coat impermeability in soybean using inter-specific populations

Modified speed breeding approach reduced breeding cycle to less than half in vegetable soybean [Glycine max (L.) Merr.]

Vegetable soybean [Glycine max (L.) Merr.] is gaining popularity because of its high nutritive values and health benefits; however, its productivity is scarce. Recognizing the need to accelerate breeding progress, a modified approach of 'speed breeding' was used in 16 vegetable soybean genotypes to reduce the breeding periods. The genotypes were exposed to cycles of 10 h light (30 °C) and 14 h dark (25 °C) with CO2 (550 ppm) and without CO2 supplementation under the light intensity of 220 µmol m-2 s-1 at the canopy level and 70-80% relative humidity. To reduce the time further, physiologically matured pods were harvested once they changed their color from green to greenish yellow and dried in the oven for 7 days at 25 ± 2 °C with RH 10-20%. The genotypes showed variable responses towards days to flowering coupled with an increase in the number of pods, number of seeds and seed weight per plant, and 100 seed weight during a short breeding period under CO2 supplement. A couple of genotypes behaved indifferently under normal and elevated CO2 levels. The fresh oven-dried seeds displayed 73.33-100% germination, while that in the seeds stored at 4 °C for 10 months was 80-100%. Thus, the modified speed breeding technique could effectively reduce the breeding period without affecting the germination of the seeds. With this approach, we could save 6-34 days in a genotype dependent way which would at least give 4-4.5 generations of soybean per year instead of the usual 1-2 generations. Further, the reduction in maturity duration was more in longer duration genotypes than the shorter duration ones. This represents the country's initial report of rapid breeding in vegetable soybean and offers ample opportunity for rapid generation advancement in this crop.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12298-024-01503-z.

Research advances on the hard seededness trait of soybean and the underlying regulatory mechanisms

Soybean is one of the world's most economically significant crops and is widely utilized as an essential source of vegetable protein and edible oil. Cultivated soybean is domesticated from its annual counterpart, wild soybean, which is considered valuable germplasm for soybean breeding. However, wild soybean accessions generally produce seeds with impermeable coats, a trait known as hard seededness (HS), which is beneficial for long-term seed survival but is undesirable for the uniform water absorption and germination of seeds, thus limiting the utilization of wild soybeans in breeding. In addition, moderate HS can isolate the embryo from the surrounding environment and is thus beneficial for long-term seed storage and germplasm preservation. The HS trait is primarily associated with the structure and chemical composition of the seed coat. Moreover, its development is also influenced by various environmental conditions, such as water and temperature. Genetic analysis has revealed that HS of soybean is a complex quantitative trait controlled by multiple genes or minor quantitative trait loci (QTL), with many QTLs and several causal genes currently identified. Investigating the physiological and molecular mechanisms underlying this trait is crucial for soybean breeding, production, and food processing. For this article, the literature was reviewed and condensed to create a well-rounded picture of the current understanding of internal and external factors, QTLs, causal genes, and the regulatory mechanisms related to the HS of soybean, with the aim of providing reference for future research and utilization of this trait.

A polygalacturonase gene PG031 regulates seed coat permeability with a pleiotropic effect on seed weight in soybean

KEY MESSAGE

A QTL gene PG031 regulates the seed coat permeability and seed weight. The critical SNP that can explain the variation of permeability in soybean population can be used for seed improvement. Seed coat permeability is a critical trait for soybean and is tightly associated with seed storage longevity, germination, soy-food processing, and other commercially important traits. However, the molecular mechanism of such an important trait in soybean is largely unclear. In the present study, we uncovered a polygalacturonase (PG) gene, PG031, which controls seed coat permeability in soybean. PG031 exhibited tissue expression specificity in flowers while it was strongly induced in the seed coat and radical upon imbibition. Subcellular localization localized PG031 to the cell wall, suggesting its role specific to the cell wall of the seed coat. Natural variation analysis reveals three haplotypes (PG031289H, PG031289Y, and PG031Hap3) and the single nucleotide polymorphism (SNP) variation for H289Y may explain the variation in permeability in cultivated soybean population. Overexpression of impermeable allele PG031289H significantly reduced the seed coat permeability and 100-seed weight in transgenic seeds through decreasing intracellular spaces of the osteosclereid layer and parenchyma of the seed coat to decline water accessing the seed. PG031 was also located within a quantitative trait locus (QTL) explaining ~ 15% of total phenotypic variation in permeability, nominating it the QTL gene controlling permeability. PG031289Y allele associated with high permeability and high seed weight is experiencing ongoing artificial selection. The results provide insight into the genetic mechanism of seed coat permeability and indicate its potential for the improvement of permeability-associated seed traits in soybean.