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Singh J, Kumar A, Nayal AS, Vikal S, Shukla G, Singh A, Singh A, Goswami S, Kumar A, Gautam YK, Verma Y, Gaurav SS, Pratap D. Comprehensive antifungal investigation of green synthesized silver nanoformulation against four agriculturally significant fungi and its cytotoxic applications. Sci Rep 2024; 14:5934. [PMID: 38467843 PMCID: PMC10928228 DOI: 10.1038/s41598-024-56619-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2023] [Accepted: 03/08/2024] [Indexed: 03/13/2024] Open
Abstract
The present study reports the green synthesis of silver nanoparticles (AgNPs) in powder form using the leaf extract of Azadirachta indica. The synthesis of AgNPs was confirmed by UV-vis spectroscopy, FTIR, XRD, FESEM, and EDX. The synthesized AgNPs were in a powdered state and dispersed completely in 5% polyethylene glycol (PEG) and demonstrated prolonged shelf life and enhanced bioavailability over a year without any aggregation. The resulting silver nanoformulation demonstrated complete inhibition against Sclerotinia sclerotiorum and Colletotrichum falcatum and 68% to 80% inhibition against Colletotrichum gloeosporioides and Rhizoctonia solani respectively, at 2000 ppm. The EC50 values determined through a statistical analysis were 66.42, 157.7, 19.06, and 33.30 ppm for S. sclerotiorum, C. falcatum, C. gloeosporioides, and R. solani respectively. The silver nanoformulation also established significant cytotoxicity, with a 74.96% inhibition rate against the human glioblastoma cell line U87MG at 250 ppm. The IC50 value for the cancerous cell lines was determined to be 56.87 ppm through statistical analysis. The proposed silver nanoformulation may be used as a next-generation fungicide in crop improvement and may also find application in anticancer investigations. To the best of our knowledge, this is also the first report of silver nanoformulation demonstrating complete inhibition against the economically significant phytopathogen C. falcatum.
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Affiliation(s)
- Jyoti Singh
- Plant Molecular Virology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Ankit Kumar
- Plant Molecular Virology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Amit Singh Nayal
- Department of Statistics, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Sagar Vikal
- Smart Materials and Sensor Laboratory, Department of Physics, Chaudhary Charan Singh University, Meerut, 250004, Uttar Pradesh, India
| | - Gyanika Shukla
- NanoScience and NanoBiology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Amardeep Singh
- NanoScience and NanoBiology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Anupma Singh
- Department of Zoology, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Sakshi Goswami
- Department of Toxicology, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Ashwani Kumar
- Departemnt of Physics, Regional Institute of Education (RIE), Bhubaneswar, Odisha, 751022, India
| | - Yogendra K Gautam
- Smart Materials and Sensor Laboratory, Department of Physics, Chaudhary Charan Singh University, Meerut, 250004, Uttar Pradesh, India
| | - Yeshvandra Verma
- Department of Toxicology, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Shailendra Singh Gaurav
- NanoScience and NanoBiology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India
| | - Dharmendra Pratap
- Plant Molecular Virology Laboratory, Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, Meerut, Uttar Pradesh, 250004, India.
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Viswanathan R, Singh SP, Selvakumar R, Singh D, Bharti YP, Chhabra ML, Parameswari B, Sharma A, Minnatullah M. Varietal Break Down to Red Rot in the Sugarcane Variety Co 0238 Mimics Vertifolia Effect: Characterizing New Colletotrichum falcatum Pathotype CF13. SUGAR TECH 2022. [DOI: 10.1007/s12355-021-01070-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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Torres N, Yu R, Kurtural SK. Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils. Microorganisms 2021; 9:1273. [PMID: 34207954 PMCID: PMC8230719 DOI: 10.3390/microorganisms9061273] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Revised: 06/07/2021] [Accepted: 06/10/2021] [Indexed: 12/05/2022] Open
Abstract
Vineyard-living microbiota affect grapevine health and adaptation to changing environments and determine the biological quality of soils that strongly influence wine quality. However, their abundance and interactions may be affected by vineyard management. The present study was conducted to assess whether the vineyard soil microbiome was altered by the use of biostimulants (arbuscular mycorrhizal fungi (AMF) inoculation vs. non-inoculated) and/or irrigation management (fully irrigated vs. half irrigated). Bacterial and fungal communities in vineyard soils were shaped by both time course and soil management (i.e., the use of biostimulants and irrigation). Regarding alpha diversity, fungal communities were more responsive to treatments, whereas changes in beta diversity were mainly recorded in the bacterial communities. Edaphic factors rarely influence bacterial and fungal communities. Microbial network analyses suggested that the bacterial associations were weaker than the fungal ones under half irrigation and that the inoculation with AMF led to the increase in positive associations between vineyard-soil-living microbes. Altogether, the results highlight the need for more studies on the effect of management practices, especially the addition of AMF on cropping systems, to fully understand the factors that drive their variability, strengthen beneficial microbial networks, and achieve better soil quality, which will improve crop performance.
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Affiliation(s)
| | | | - S. Kaan Kurtural
- Department of Viticulture and Enology, University of California Davis, 1 Shields Avenue, Davis, CA 95616, USA; (N.T.); (R.Y.)
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Chandra A, Singh D, Joshi D, Pathak AD, Singh RK, Kumar S. A highly contiguous reference genome assembly for Colletotrichum falcatum pathotype Cf08 causing red rot disease in sugarcane. 3 Biotech 2021; 11:148. [PMID: 33732569 DOI: 10.1007/s13205-021-02695-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 02/15/2021] [Indexed: 11/24/2022] Open
Abstract
Among the biotic factors, which affect the productivity and quality of sugarcane, red rot disease caused by the fungal pathogen, Colletotrichum falcatum is the most devastating that cause enormous loss to millers as well as cane growers. We present a highly contiguous genome assembly of C. falcatum pathotype Cf08 which is virulent to popular sugarcane varieties grown in more than 3 million hectares in sub-tropical India. By performing long read sequencing on PacBio RSII system, 56.06 Mb assemblies with 238 contigs having N50 of 0.51 Mb and L50 of 34 was produced. A BUSCO completeness score of 97.24% (including 4.1% fragmented) of the entire C. falcatum Cf08 nuclear genome, greatly improved contiguity compared to an existing highly fragmented draft of C. falcatum Cf671 genome (48.13 Mb) was obtained. This Cf08 assembly had 54.14% GC content and possessed < 1% repetitive elements. A total of 18,635 protein-coding genes were predicted compared with 12,270 for Cf671. Among 617 CAZymes predicted, glycoside hydrolases were the predominant (298), and among 7264 genes associated with pathogenicity/virulence, 77 genes having effector functions were identified. The assembled genome showed its similarity with the genome of C. graminicola and C. higginsianum, the causal organisms of anthracnose in maize and in members of Brassicaceae, respectively. A total of 94 large sequences (> 100 kb) of Cf08 were mapped over C. higginsianum 10 of 12 chromosomes with 106 synteny blocks. Results discussed here would provide an important tool for future studies of evolutionary and functional genomics in C. falcatum. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-02695-x.
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Affiliation(s)
- Amaresh Chandra
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
| | - Dinesh Singh
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
| | - Deeksha Joshi
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
| | - Ashwini D Pathak
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
| | - Ram K Singh
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
- Indian Council of Agricultural Research, Krishi Bhawan, New Delhi, 110001 India
| | - Sanjeev Kumar
- ICAR-Indian Institute of Sugarcane Research, Raibareli Road, P.O. Dilkusha, Lucknow, 226002 India
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