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Ramdass AC, Rampersad SN. Detection and diversity of the mannosylerythritol lipid (MEL) gene cluster and lipase A and B genes of Moesziomyces antarcticus isolated from terrestrial sites chronically contaminated with crude oil in Trinidad. BMC Microbiol 2022; 22:43. [PMID: 35120442 PMCID: PMC8815271 DOI: 10.1186/s12866-021-02419-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Accepted: 12/06/2021] [Indexed: 12/30/2022] Open
Abstract
BACKGROUND Mannosylerythritol lipids (MELs) belong to the class of glycolipid biosurfactants and are produced by members of the Ustilago and Moesziomyces genera. Production of MELs is regulated by a biosynthetic gene cluster (MEL BGC). Extracellular lipase activity is also associated with MEL production. Most microbial glycolipid-producers are isolated from oil-contaminated environments. MEL-producing yeast that are capable of metabolizing crude oil are understudied, and there is very limited data on indigenous strains from tropical climates. Analysis of the MEL BGC and lipase genes in Trinidad M. antarcticus strains, using a gene-targeted approach, revealed a correlation between their intrinsic capability to degrade crude oil and their adaptation to survive in a chronically polluted terrestrial environment. RESULTS M. antarcticus was isolated from naturally-occurring crude oil seeps and an asphaltic mud volcano in Trinidad; these are habitats that have not been previously reported for this species. Genus identification was confirmed by the large-subunit (LSU) and the small-subunit (SSU) sequence comparisons and species identification was confirmed by ITS sequence comparisons and phylogenetic inference. The essential genes (Emt1, Mac1, Mac2, Mmf1) of the MEL BGC were detected with gene-specific primers. Emt1p, Mac1p and Mmf1p sequence analyses confirmed that the Trinidad strains harboured novel synonymous amino acid (aa) substitutions and structural comparisons revealed different regions of disorder, specifically for the Emt1p sequence. Functionality of each protein sequence was confirmed through motif mining and mutation prediction. Phylogenetic relatedness was inferred for Emt1p, Mac1p and Mmf1p sequences. The Trinidad strains clustered with other M. antarcticus sequences, however, the representative Trinidad M. antarcticus sequences consistently formed a separate, highly supported branch for each protein. Similar phylogenetic placement was indicated for LipA and LipB nucleotide and protein sequences. The Trinidad strains also demonstrated lipolytic activity in culture, with an ability to utilize different carbon sources. Comparative evolution of MEL BGC and LipA gene suggested early and late duplication events, depending on the gene, followed by a number of speciation events within Ustilaginaceae. M. antarcticus and M. aphidis were separated from all other members of Ustilaginaceae and two gene homologues were detected, one for each species. CONCLUSIONS Sequence analyses was based on a novel gene-targeted approach to analyze the essential genes of the MEL BGC and LipA and LipB genes of M. antarcticus strains from Trinidad. The findings indicated that these strains accumulated nucleotide mutations to a threshold level that did not affect the function of specific proteins encoded by the MEL BGC and LipA and LipB genes. The biosurfactant and lipase enzymes secreted by these Trinidad M. antarcticus strains facilitated their survival in oil-contaminated terrestrial environments. These findings suggest that the Trinidad strains should be explored as promising candidates for the commercial production of MEL biosurfactants and lipase enzymes.
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Affiliation(s)
- Amanda C. Ramdass
- Biochemistry Research Laboratory (Rm216), Department of Life Sciences, Faculty of Science and Technology, The University of the West Indies, St. Augustine, West Indies Trinidad and Tobago
| | - Sephra N. Rampersad
- Biochemistry Research Laboratory (Rm216), Department of Life Sciences, Faculty of Science and Technology, The University of the West Indies, St. Augustine, West Indies Trinidad and Tobago
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Potential of Biosurfactants’ Production on Degrading Heavy Oil by Bacterial Consortia Obtained from Tsunami-Induced Oil-Spilled Beach Areas in Miyagi, Japan. JOURNAL OF MARINE SCIENCE AND ENGINEERING 2020. [DOI: 10.3390/jmse8080577] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Bioremediation is one of the promising environment-friendly approaches to eliminate oil contamination. However, heavy oil is known to degrade slowly due to its hydrophobicity. Therefore, microorganisms capable of producing biosurfactants are gaining substantial interest because of their potential to alter hydrocarbon properties and thereby speed up the degradation process. In this study, six bacterial consortia were obtained from the oil-spilled beach areas in Miyagi, Japan, and all of which exhibited high potential in degrading heavy oil measured by gas chromatography with flame ionization detector (GC-FID). The polymerase chain reaction—denaturing gradient gel electrophoresis (PCR-DGGE) and next-generation sequencing (NGS) revealed that the diverse microbial community in each consortium changed with subculture and became stable with a few effective microorganisms after 15 generations. The total petroleum hydrocarbons (TPH) degradation ability of the consortia obtained from a former gas station (C1: 81%) and oil refinery company (C6: 79%) was higher than that of the consortia obtained from wastewater treatment plant (WWTP) (C3: 67%, and C5: 73%), indicating that bacteria present in C1 and C6 were historically exposed to petroleum hydrocarbons. Moreover, it was intriguing that the consortium C4, also obtained from WWTP, exhibited high TPH degradation ability (77%). The NGS results revealed that two bacteria, Achromobacter sp. and Ochrobactrum sp., occupied more than 99% of the consortium C4, while no Pseudomonas sp. was found in C4, though this bacterium was observed in other consortia and is also known to be a potential candidate for TPH degradation as reported by previous studies. In addition, the consortium C4 showed high biosurfactant-producing ability among the studied consortia. To date, no study has reported the TPH degradation by the combination of Achromobacter sp. and Ochrobactrum sp.; therefore, the consortium C4 provided an excellent opportunity to study the interaction of and biosurfactant production by these two bacteria during TPH degradation.
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Methylisothiazolinone induces apoptotic cell death via matrix metalloproteinase activation in human bronchial epithelial cells. Toxicol In Vitro 2020; 62:104661. [DOI: 10.1016/j.tiv.2019.104661] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 09/16/2019] [Accepted: 09/19/2019] [Indexed: 12/16/2022]
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Karthick A, Roy B, Chattopadhyay P. A review on the application of chemical surfactant and surfactant foam for remediation of petroleum oil contaminated soil. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 243:187-205. [PMID: 31096172 DOI: 10.1016/j.jenvman.2019.04.092] [Citation(s) in RCA: 101] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Revised: 04/19/2019] [Accepted: 04/22/2019] [Indexed: 05/25/2023]
Abstract
Soil, exposed to petroleum oil contaminants (in the form of petrol, diesel, gasoline, crude oil, used motor oil), may cause potential damage to the environment, animal and human health. In this review article, mechanisms of the petroleum oil contaminant removal from soil by chemical surfactant systems such as surfactant solution, surfactant foam and nanoparticle stabilized surfactant foams are explained. Laboratory based research works, reported within the last decade on the application of similar systems towards the removal of petroleum oil contaminant from the soil, have been discussed. It is an important fact that the commercial implementation of the chemical surfactant based technology depends on the environmental properties (biodegradability and toxicity) of the surfactants. In recent times, surfactant foam and nanoparticle stabilized surfactant foam are becoming more popular and considered advantageous over the use of surfactant solution alone. However, more research works have to be conducted on nanoparticle stabilized foam. The impact of physicochemical properties of the nanoparticles on soil remediation has to be explored in depth.
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Affiliation(s)
- Arun Karthick
- Department of Chemical Engineering, Birla Institute of Technology and Science (BITS), Pilani Campus, Pilani, VidyaVihar, 333031, Rajasthan, India.
| | - Banasri Roy
- Department of Chemical Engineering, Birla Institute of Technology and Science (BITS), Pilani Campus, Pilani, VidyaVihar, 333031, Rajasthan, India.
| | - Pradipta Chattopadhyay
- Department of Chemical Engineering, Birla Institute of Technology and Science (BITS), Pilani Campus, Pilani, VidyaVihar, 333031, Rajasthan, India.
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Ben Neriah A, Paster A. Effect of Temporal Changes in Air Injection Rate on Air Sparging Performance Groundwater Remediation. GROUND WATER 2016; 54:851-860. [PMID: 27104886 DOI: 10.1111/gwat.12428] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Accepted: 03/31/2016] [Indexed: 06/05/2023]
Abstract
Air sparging (AS) is a commonly applied method for treating groundwater contaminated with volatile organic compounds (VOCs). When using a constant injection of air (continuous mode), a decline in remediation efficiency is often observed, resulting from insufficient mixing of contaminants at the pore scale. It is well known that turning the injection on and off (pulsed mode) may lead to a better remediation performance. In this article, we investigate groundwater mixing and contaminant removal efficiency in different injection modes (i.e., continuous and pulsed), and compare them to those achieved in a third mode, which we denote as "rate changing." In this mode, injection is always on, and its rate is varying with time by abrupt changes. For the purpose of this investigation, we conducted two separate sets of experiments in a laboratory tank. In the first set of experiments, we used dye plume tracing to characterize the mixing induced by AS. In the second set of experiments, we contaminated the tank with a VOC and compared the remediation efficiency between the different injection modes. As expected, we observed that time-variable injection modes led to enhanced mixing and contaminant removal. The decrease in contaminant concentrations during the experiment was found to be double for the "rate changing" and "pulsed" modes compared to the continuous mode, with a slightly preferable performance for the "rate changing" mode. These results highlight the critical role that mixing plays in AS, and support the need for further investigation of the proposed "rate changing" injection mode.
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Affiliation(s)
- Asaf Ben Neriah
- Environmental Hydrology Laboratory, School of Mechanical Engineering, Tel Aviv University, Tel Aviv, Israel
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Lee JH, Woo HJ, Jeong KS, Park KS. The radius of influence of a combined method of in situ air sparging and soil vapor extraction in the intertidal sediments of Gomso Bay on the west coast of South Korea. SPRINGERPLUS 2016; 5:1388. [PMID: 27610307 PMCID: PMC4993732 DOI: 10.1186/s40064-016-3026-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Accepted: 08/09/2016] [Indexed: 11/24/2022]
Abstract
Background In situ air sparging (IAS) was undertaken at sites in the tidal flats of Mandol and Hajeon, on the west coast of South Korea, to estimate variations in the radius of influence (ROI). Results The Mandol core sample consisted of sand and muddy sand 1.6–3.4 \documentclass[12pt]{minimal}
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\begin{document}$$\Phi$$\end{document}Φ) and contained water (average 15.10 %). The Hajeon core sample consisted of muddy sand, sandy silt, and muddy sandy gravel 1.31–4.44 \documentclass[12pt]{minimal}
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\begin{document}$$\Phi$$\end{document}Φ) and contained water (average 19.77 %). These sites differ in their sedimentary and geochemical characteristics. At the Mandol site, no H2S or combustible gas was detected during a 48-h sampling period, except for some volatile organic compounds (0.1–2.0 ppm) at the monitoring well during the initial 30 min. At the soil vapor extraction wells, CO2 and O2 varied by 850 ppm (690–1540 ppm) and 0.5 % (20.4–20.9 %), respectively. At the Hajeon site, CO2 and O2 varied from 580 to 1250 ppm and 20.6 to 20.9 %, respectively, during the 48-h sampling period. Conclusions At the Mandol site, an oxygen concentration of 20.6 % was assumed as the effective concentration, and the ROI was estimated to be 128.0 cm. However, at the Hajeon site the ROI was estimated to be 85.7 cm. The smaller effective ROI at the Hajeon site was likely caused by the thin aquifer and thin screens of the sparing well. This estimated ROI show that the remediation effectiveness varies greatly as a heterogeneities and anisotropies in the porous sediments. Besides, injection pressure, flow rate, pulsing or continuous mode, and the range of intrinsic permeability for most important characteristic of sediment (soil) type impacted the ROI. Therefore, the IAS method is more effective at a pervasive air flow sediments such as Mandol, which consists of sand and muddy sand than at a channelized site such as Hajeon. Electronic supplementary material The online version of this article (doi:10.1186/s40064-016-3026-3) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Jun-Ho Lee
- Korean Seas Geosystem Research Center, Korea Institute of Ocean Science & Technology (KIOST), 787, Haean-ro, Sangnok-gu, Ansan-si, Gyeonggi-do 15627 Korea
| | - Han Jun Woo
- Korean Seas Geosystem Research Center, Korea Institute of Ocean Science & Technology (KIOST), 787, Haean-ro, Sangnok-gu, Ansan-si, Gyeonggi-do 15627 Korea
| | - Kap-Sik Jeong
- Korean Seas Geosystem Research Center, Korea Institute of Ocean Science & Technology (KIOST), 787, Haean-ro, Sangnok-gu, Ansan-si, Gyeonggi-do 15627 Korea
| | - Kap-Song Park
- Department of Environmental Science and Engineering, Hankuk University of Foreign Studies (HUFS), 81, Oedae-ro, Mohyeon-myeon, Cheoin-gu, Yongin-si, Gyeonggi-do 17035 Korea
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Maikudi Usman M, Dadrasnia A, Tzin Lim K, Fahim Mahmud A, Ismail S. Application of biosurfactants in environmental biotechnology; remediation of oil and heavy metal. AIMS BIOENGINEERING 2016. [DOI: 10.3934/bioeng.2016.3.289] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
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Kuppusamy S, Palanisami T, Megharaj M, Venkateswarlu K, Naidu R. In-Situ Remediation Approaches for the Management of Contaminated Sites: A Comprehensive Overview. REVIEWS OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2016; 236:1-115. [PMID: 26423073 DOI: 10.1007/978-3-319-20013-2_1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Though several in-situ treatment methods exist to remediate polluted sites, selecting an appropriate site-specific remediation technology is challenging and is critical for successful clean up of polluted sites. Hence, a comprehensive overview of all the available remediation technologies to date is necessary to choose the right technology for an anticipated pollutant. This review has critically evaluated the (i) technological profile of existing in-situ remediation approaches for priority and emerging pollutants, (ii) recent innovative technologies for on-site pollutant remediation, and (iii) current challenges as well as future prospects for developing innovative approaches to enhance the efficacy of remediation at contaminated sites.
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Affiliation(s)
- Saranya Kuppusamy
- CERAR-Centre for Environmental Risk Assessment and Remediation, University of South Australia, Mawson Lakes, SA, 5095, Australia
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
| | - Thavamani Palanisami
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Mallavarapu Megharaj
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia.
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia.
| | - Kadiyala Venkateswarlu
- Formerly Department of Microbiology, Sri Krishnadevaraya University, Anantapur, 515055, India
| | - Ravi Naidu
- CRC CARE-Cooperative Research Centre for Contamination Assessment and Remediation of Environment, 486, Salisbury South, SA, 5106, Australia
- GIER- Global Institute for Environmental Research, Faculty of Science and Information Technology, The University of Newcastle, Callaghan, NSW, 2308, Australia
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Agarwal A, Liu Y. Remediation technologies for oil-contaminated sediments. MARINE POLLUTION BULLETIN 2015; 101:483-490. [PMID: 26414316 DOI: 10.1016/j.marpolbul.2015.09.010] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2015] [Revised: 08/21/2015] [Accepted: 09/03/2015] [Indexed: 06/05/2023]
Abstract
Oil-contaminated sediments pose serious environmental hazards for both aquatic and terrestrial ecosystems. Innovative and environmentally compatible technologies are urgently required to remove oil-contaminated sediments. In this paper, various physical, chemical and biological technologies are investigated for the remediation of oil-contaminated sediments such as flotation and washing, coal agglomeration, thermal desorption, ultrasonic desorption, bioremediation, chemical oxidation and extraction using ionic liquids. The basic principles of these technologies as well as their advantages and disadvantages for practical application have been discussed. A combination of two or more technologies is expected to provide an innovative solution that is economical, eco-friendly and adaptable.
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Affiliation(s)
- Ashutosh Agarwal
- Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, 1 Cleantech Loop, Singapore 637141, Singapore
| | - Yu Liu
- Advanced Environmental Biotechnology Centre, Nanyang Environment and Water Research Institute, Nanyang Technological University, 1 Cleantech Loop, Singapore 637141, Singapore; School of Civil and Environmental Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798, Singapore.
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