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Nerva L, Dalla Costa L, Ciacciulli A, Sabbadini S, Pavese V, Dondini L, Vendramin E, Caboni E, Perrone I, Moglia A, Zenoni S, Michelotti V, Micali S, La Malfa S, Gentile A, Tartarini S, Mezzetti B, Botta R, Verde I, Velasco R, Malnoy MA, Licciardello C. The Role of Italy in the Use of Advanced Plant Genomic Techniques on Fruit Trees: State of the Art and Future Perspectives. Int J Mol Sci 2023; 24:ijms24020977. [PMID: 36674493 PMCID: PMC9861864 DOI: 10.3390/ijms24020977] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/28/2022] [Accepted: 12/29/2022] [Indexed: 01/07/2023] Open
Abstract
Climate change is deeply impacting the food chain production, lowering quality and yield. In this context, the international scientific community has dedicated many efforts to enhancing resilience and sustainability in agriculture. Italy is among the main European producers of several fruit trees; therefore, national research centers and universities undertook several initiatives to maintain the specificity of the 'Made in Italy' label. Despite their importance, fruit crops are suffering from difficulties associated with the conventional breeding approaches, especially in terms of financial commitment, land resources availability, and long generation times. The 'new genomic techniques' (NGTs), renamed in Italy as 'technologies for assisted evolution' (TEAs), reduce the time required to obtain genetically improved cultivars while precisely targeting specific DNA sequences. This review aims to illustrate the role of the Italian scientific community in the use of NGTs, with a specific focus on Citrus, grapevine, apple, pear, chestnut, strawberry, peach, and kiwifruit. For each crop, the key genes and traits on which the scientific community is working, as well as the technological improvements and advancements on the regeneration of local varieties, are presented. Lastly, a focus is placed on the legal aspects in the European and in Italian contexts.
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Affiliation(s)
- Luca Nerva
- Research Center for Viticulture and Enology, Council for Agricultural Research and Economics, 31015 Conegliano, Italy
- Institute for Sustainable Plant Protection, National Research Council, 10135 Torino, Italy
| | - Lorenza Dalla Costa
- Research and Innovation Centre, Foundation Edmund Mach, 38098 San Michele all’Adige, Italy
| | - Angelo Ciacciulli
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 95024 Acireale, Italy
| | - Silvia Sabbadini
- Department of Agricultural, Food, and Environmental Sciences, Marche Polytechnic University, 60131 Ancona, Italy
| | - Vera Pavese
- Department of Agricultural, Forest and Food Sciences, University of Torino, 10095 Torino, Italy
| | - Luca Dondini
- Department of Agricultural and Food Sciences, University of Bologna, 40127 Bologna, Italy
| | - Elisa Vendramin
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 00134 Rome, Italy
| | - Emilia Caboni
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 00134 Rome, Italy
| | - Irene Perrone
- Institute for Sustainable Plant Protection, National Research Council, 10135 Torino, Italy
| | - Andrea Moglia
- Department of Agricultural, Forest and Food Sciences, University of Torino, 10095 Torino, Italy
| | - Sara Zenoni
- Department of Biotechnology, University of Verona, 37134 Verona, Italy
| | - Vania Michelotti
- Research Center for Genomics and Bioinformatics, Council for Agricultural Research and Economics, 29017 Fiorenzuola D’Arda, Italy
| | - Sabrina Micali
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 00134 Rome, Italy
| | - Stefano La Malfa
- Department of Biotechnology, University of Catania, 95124 Catania, Italy
| | - Alessandra Gentile
- Department of Biotechnology, University of Catania, 95124 Catania, Italy
| | - Stefano Tartarini
- Department of Agricultural and Food Sciences, University of Bologna, 40127 Bologna, Italy
| | - Bruno Mezzetti
- Department of Agricultural, Food, and Environmental Sciences, Marche Polytechnic University, 60131 Ancona, Italy
| | - Roberto Botta
- Department of Agricultural, Forest and Food Sciences, University of Torino, 10095 Torino, Italy
| | - Ignazio Verde
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 00134 Rome, Italy
| | - Riccardo Velasco
- Research Center for Viticulture and Enology, Council for Agricultural Research and Economics, 31015 Conegliano, Italy
| | - Mickael Arnaud Malnoy
- Research and Innovation Centre, Foundation Edmund Mach, 38098 San Michele all’Adige, Italy
- Correspondence: (M.A.M.); (C.L.); Tel.: +39-04-6161-5536 (M.A.M.); +39-09-5765-3104 (C.L.)
| | - Concetta Licciardello
- Research Center for Olive Fruit and Citrus Crops, Council for Agricultural Research and Economics, 95024 Acireale, Italy
- Correspondence: (M.A.M.); (C.L.); Tel.: +39-04-6161-5536 (M.A.M.); +39-09-5765-3104 (C.L.)
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Salonia F, Ciacciulli A, Pappalardo HD, Poles L, Pindo M, Larger S, Caruso P, Caruso M, Licciardello C. A dual sgRNA-directed CRISPR/Cas9 construct for editing the fruit-specific β-cyclase 2 gene in pigmented citrus fruits. FRONTIERS IN PLANT SCIENCE 2022; 13:975917. [PMID: 36582639 PMCID: PMC9792771 DOI: 10.3389/fpls.2022.975917] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 10/13/2022] [Indexed: 06/17/2023]
Abstract
CRISPR/Cas9 genome editing is a modern biotechnological approach used to improve plant varieties, modifying only one or a few traits of a specific variety. However, this technology cannot be easily used to improve fruit quality traits in citrus, due to the lack of knowledge of key genes, long juvenile stage, and the difficulty regenerating whole plants of specific varieties. Here, we introduce a genome editing approach with the aim of producing citrus plantlets whose fruits contain both lycopene and anthocyanins. Our method employs a dual single guide RNA (sgRNA)-directed genome editing approach to knockout the fruit-specific β-cyclase 2 gene, responsible for the conversion of lycopene to beta-carotene. The gene is targeted by two sgRNAs simultaneously to create a large deletion, as well as to induce point mutations in both sgRNA targets. The EHA105 strain of Agrobacterium tumefaciens was used to transform five different anthocyanin-pigmented sweet oranges, belonging to the Tarocco and Sanguigno varietal groups, and 'Carrizo' citrange, a citrus rootstock as a model for citrus transformation. Among 58 plantlets sequenced in the target region, 86% of them were successfully edited. The most frequent mutations were deletions (from -1 to -74 nucleotides) and insertions (+1 nucleotide). Moreover, a novel event was identified in six plantlets, consisting of the inversion of the region between the two sgRNAs. For 20 plantlets in which a single mutation occurred, we excluded chimeric events. Plantlets did not show an altered phenotype in vegetative tissues. To the best of our knowledge, this work represents the first example of the use of a genome editing approach to potentially improve qualitative traits of citrus fruit.
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Affiliation(s)
- Fabrizio Salonia
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
| | - Angelo Ciacciulli
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
| | - Helena Domenica Pappalardo
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
| | - Lara Poles
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
- Department of Agriculture, Food and Environment (Di3A), University of Catania, Catania, Italy
| | - Massimo Pindo
- Research and Innovation Centre, Trento with S. Michele all’ Adige, Trento, Italy
| | - Simone Larger
- Research and Innovation Centre, Trento with S. Michele all’ Adige, Trento, Italy
| | - Paola Caruso
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
| | - Marco Caruso
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
| | - Concetta Licciardello
- Council for Agricultural Research and Economics (CREA) - Research Centre for Olive, Fruit and Citrus Crops, Acireale, Italy
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Hernández-Amasifuen AD, Pineda-Lázaro AJ, Díaz-Pillasca HB. Micropropagación in vitro de naranja agria (Citrus aurantium L.) a partir de segmentos nodales. BIONATURA 2021. [DOI: 10.21931/rb/2021.06.04.13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
Abstract
La naranja agria (Citrus aurantium L.) presenta un alto valor nutricional y gastronómico en el distrito de Huacho, Lima, Perú, pero en la actualidad se considera una especie en peligro de desaparecer del distrito y alrededores por problemas fitosanitarios. Para la recuperación y repoblación de esta especie se planteó emplear técnicas biotecnológicas para la obtención de plantas libres de patógenos. Por lo tanto, el objetivo de la presente investigación fue micropropagar in vitro naranja agria a partir de segmentos nodales. Los segmentos nodales de naranja agria fueron desinfectados en diferentes concentraciones de NaClO, luego se introdijeron en medio de cultivo MS (Murashige y Skoog) adicionado con BAP, KIN y AG3 para la fase de multiplicación, posteriormente se transfirieron a medios MS adicionado con IBA y ANA para la fase de enraizamiento. La evaluación del porcentaje de contaminación se realizó a los diez días, la evaluación de formación de brotes en fase de multiplicación se realizó a los 30 días y la evaluación de enraizamiento a los 30 días. En la fase de desinfección y establecimiento in vitro se logró obtener 0% de contaminación y 0% de oxidación de los explantes. En la fase de multiplicación in vitro los mejores resultados se obtuvieron en el medio de cultivo M8 generando 4,7 brotes por explante. Y finalmente en la fase de enraizamiento el medio E4 permitió obtener 94,7% de explantes enraizados, 23,4 mm de longitud de raíz y 2,2 raíces por explante.
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Affiliation(s)
- Angel David Hernández-Amasifuen
- Universidad Nacional José Faustino Sánchez Carrión, Facultad de Ciencias, Laboratorio de Biotecnología Vegetal, Huacho, Perú
| | - Alexandra Jherina Pineda-Lázaro
- Universidad Nacional José Faustino Sánchez Carrión, Facultad de Ciencias, Laboratorio de Biotecnología Vegetal, Huacho, Perú
| | - Hermila Belba Díaz-Pillasca
- Universidad Nacional José Faustino Sánchez Carrión, Facultad de Ciencias, Laboratorio de Biotecnología Vegetal, Huacho, Perú
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