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Kuang B, Xiao R, Hu Y, Wang Y, Zhang L, Wei Z, Bai J, Zhang K, Acuña JJ, Jorquera MA, Pan W. Metagenomics reveals biogeochemical processes carried out by sediment microbial communities in a shallow eutrophic freshwater lake. Front Microbiol 2023; 13:1112669. [PMID: 36713194 PMCID: PMC9874162 DOI: 10.3389/fmicb.2022.1112669] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 12/19/2022] [Indexed: 01/12/2023] Open
Abstract
Introduction As the largest shallow freshwater lake in the North China Plain, Baiyangdian lake is essential for maintaining ecosystem functioning in this highly populated region. Sediments are considered to record the impacts of human activities. Methods The abundance, diversity and metabolic pathways of microbial communities in sediments were studied by metagenomic approach to reveal patterns and mechanism of C, N, P and S cycling under the threat of lake eutrophication. Results Many genera, with plural genes encoding key enzymes involved in genes, belonging to Proteobacteria and Actinobacteria which were the most main phylum in bacterial community of Baiyangdian sediment were involved in C, N, S, P cycling processes, such as Nocardioides (Actinobacteria), Thiobacillus, Nitrosomonas, Rhodoplanes and Sulfuricaulis (Proteobacteria).For instance, the abundance of Nocardioides were positively correlated to TN, EC, SOC and N/P ratio in pathways of phytase, regulation of phosphate starvation, dissimilatory sulfate reduction and oxidation, assimilatory sulfate reduction, assimilatory nitrate reduction and reductive tricarboxylic acid (rTCA) cycle. Many key genes in C, N, P, S cycling were closely related to the reductive citrate cycle. A complete while weaker sulfur cycle between SO4 2- and HS- might occur in Baiyangdian lake sediments compared to C fixation and N cycling. In addition, dissimilatory nitrate reduction to ammonia was determined to co-occur with denitrification. Methanogenesis was the main pathway of methane metabolism and the reductive citrate cycle was accounted for the highest proportion of C fixation processes. The abundance of pathways of assimilatory nitrate reduction, denitrification and dissimilatory nitrate reduction of nitrogen cycling in sediments with higher TN content was higher than those with lower TN content. Besides, Nocardioides with plural genes encoding key enzymes involved in nasAB and nirBD gene were involved in these pathways. Discussion Nocardioides involved in the processes of assimilatory nitrate reduction, denitrification and dissimilatory nitrate reduction of nitrogen cycling may have important effects on nitrogen transformation.
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Affiliation(s)
- Bo Kuang
- College of Environment and Safety Engineering, Fuzhou University, Fuzhou, China
| | - Rong Xiao
- College of Environment and Safety Engineering, Fuzhou University, Fuzhou, China,*Correspondence: Rong Xiao, ✉
| | - Yanping Hu
- College of Environment and Safety Engineering, Fuzhou University, Fuzhou, China
| | - Yaping Wang
- College of Environment and Safety Engineering, Fuzhou University, Fuzhou, China
| | - Ling Zhang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Zhuoqun Wei
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Junhong Bai
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Kegang Zhang
- Department of Environmental Science and Engineering, North China Electric Power University, Baoding, China
| | - Jacquelinne J. Acuña
- Department of Chemical Sciences and Natural Resources, University of La Frontera, Temuco, Chile
| | - Milko A. Jorquera
- Department of Chemical Sciences and Natural Resources, University of La Frontera, Temuco, Chile
| | - Wenbin Pan
- College of Environment and Safety Engineering, Fuzhou University, Fuzhou, China
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Wang S, Zuo Z, Wang Q, Zhou A, Wang G, Xu G, Zou J. Replacing starch with resistant starch (Laminaria japonica) improves water quality, nitrogen and phosphorus budget and microbial community in hybrid snakehead (Channa maculata ♀ × Channa argus ♂). WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2023; 95:e10836. [PMID: 36744448 DOI: 10.1002/wer.10836] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 12/30/2022] [Accepted: 01/07/2023] [Indexed: 06/18/2023]
Abstract
It is essential to increase the use of carbohydrates as an energy source and improve protein synthesis and utilization to reduce ammonia nitrogen emissions. A 60-day cultural experiment was conducted to assess the impact of resistant starch (kelp meal, Laminaria japonica) replacing starch on water quality, nitrogen and phosphorus budget and microbial community of hybrid snakehead. Approximately 1350 experimental fish (11.4 ± 0.15 g) were randomly divided into control group (C, 20% starch) and four resistant starch groups: low replacement group (LR, 15% starch), medium replacement group (MR, 10% starch), high replacement group (HR, 5% starch) and full replacement group (FR, 0% starch). The crude protein and crude fat content of hybrid snakehead fish fed with the FR diet had the most significant improvement (P < 0.05). However, resistant starch also increased the effectiveness of nitrogen and phosphorus utilization in hybrid snakeheads, which decreased the proportion of total nitrogen and total phosphorus in tail water. The minimum nitrogen and phosphorus emission rate was when the starch level was 6.1%. Denitrifying microbes including Gemmobacter, Rhodobacter, Emticicia and Bosea have become much more prevalent in group FR (P < 0.05). In general, replacing starch with resistant starch can enhance the rate at which nitrogen and phosphorus are used in feeding, lessening water pollution and altering environmental microbial composition. PRACTITIONER POINTS: Resistant starch (RS) improves whole fish nutritional content. Resistant starch improves dietary nitrogen and phosphorus utilization. Resistant starch acts as a carbon source and encourages the colonization of denitrifying bacteria in water.
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Affiliation(s)
- Shaodan Wang
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China
| | - Zhiheng Zuo
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China
| | - Qiujie Wang
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China
| | - Aiguo Zhou
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China
| | - Guiqin Wang
- Joint Laboratory of Modern Agricultural Technology International Cooperation, Ministry of Education, Key Laboratory of Animal Production, Product Quality and Security, Jilin Provincial Key Laboratory of Animal Nutrition and Feed Science, College of Animal Science and Technology, Jilin Agriculture University, Changchun, China
| | - Guohuan Xu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, China
| | - Jixing Zou
- Joint Laboratory of Guangdong Province and Hong Kong Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou, China
- Guangdong Laboratory for Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China
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Xie Y, Sheng Y, Li D, He F, Du J, Jiang L, Luo C, Li G, Zhang D. Change of the structure and assembly of bacterial and photosynthetic communities by the ecological engineering practices in Dianchi Lake. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 315:120386. [PMID: 36228847 DOI: 10.1016/j.envpol.2022.120386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 08/15/2022] [Accepted: 10/04/2022] [Indexed: 06/16/2023]
Abstract
Cyanobacterial bloom challenges the aquatic ecosystem and ecological restoration is an effective approach for cyanobacterial bloom control, but the change of aquatic community after ecological restoration is still unclear. Dianchi Lake is an eutrophic lake with frequent cyanobacterial blooms in China, and recent ecological restoration projects in Caohai (north part) have a satisfactory performance. In this study, we collected 249 water samples at 23 sites from Dianchi Lake to explore the relationships between water physicochemical variables and aquatic microbial communities. Water physicochemical variables in Waihai (south part) intensively changed along time, whereas those in Caohai did not. Photoautotrophic communities were significantly divergent between Caohai and Waihai. Waihai had a lower diversity of photoautotrophic community, containing higher abundance of Cyanophyceae (89.9%) than Caohai (42.7%). Nutrient level and Cyanophyceae only exhibited strong correlations in Wahai (p < 0.05). Redundancy analysis and microbial ecological network suggested that microbial communities in Caohai had a higher stability. Deterministic process dominated the microbial assembly (50-80% for bacteria and >90% for photoautotrophs), and particularly in Caohai. Our results unraveled that the structure and assembly of bacterial and photoautotrophic communities significantly changed after ecological restoration, offering valuable suggestions that photosynthetic diversity should be focused for other ecological restoration projects.
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Affiliation(s)
- Yucheng Xie
- College of New Energy and Environment, Jilin University, Changchun, 130021, PR China; Key Laboratory of Groundwater Resources and Environment Ministry of Education, Jilin University, Changchun, 130021, PR China.
| | - Yizhi Sheng
- Department of Geology and Environmental Earth Science, Miami University, OH, 45056, USA
| | - Danni Li
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Feng He
- Water Environment Research Division, Kunming Dianchi & Plateau Lakes Institute, Kunming, 650000, China
| | - Jinsong Du
- Water Environment Research Division, Kunming Dianchi & Plateau Lakes Institute, Kunming, 650000, China
| | - Longfei Jiang
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, 510640, China
| | - Chunling Luo
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, 510640, China
| | - Guanghe Li
- School of Environment, Tsinghua University, Beijing, 100084, China
| | - Dayi Zhang
- College of New Energy and Environment, Jilin University, Changchun, 130021, PR China; Key Laboratory of Groundwater Resources and Environment Ministry of Education, Jilin University, Changchun, 130021, PR China.
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Zhang Y, Zuo J, Salimova A, Li A, Li L, Li D. Phytoplankton distribution characteristics and its relationship with bacterioplankton in Dianchi Lake. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:40592-40603. [PMID: 32671704 DOI: 10.1007/s11356-020-10033-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2019] [Accepted: 07/06/2020] [Indexed: 06/11/2023]
Abstract
Phytoplankton and bacterioplankton perform important ecological functions in lake ecosystem. In this paper, the abundance and composition of phytoplankton and bacterioplankton at 13 sites of Dianchi lake during the wet and dry seasons were monitored, and the relationship between phytoplankton and bacterioplankton in this plateau lake was studied. Phytoplankton community structure analysis was carried out by ocular method, and bacterioplankton was investigated by high-throughput 16S rRNA gene Illumina sequencing. The relationship between phytoplankton and bacterioplankton was observed using redundancy analysis. The results showed that 87 species of phytoplankton belonging to 5 phyla and 29 genera were identified in Dianchi lake. Phytoplankton diversity and richness were higher in the wet season than those in the dry season. In the wet season, Cyanophyta was the dominant phylum whose density was 2.01 × 108 cells/L, accounting for more than 90% of the total algae, then followed by Chlorophyta, Bacillariophyta, Chrysophyta, and Cryptophyta. The spatial distribution of phytoplankton in the wet season and dry seasons showed significant differences. In the dry season, the north-central part of Dianchi lake was dominated by Limnothrix redekei and Microcystis minutissima of Cyanophyta, while Pseudanabaena moniliformis and Coelosphaerium nagelianum of Cyanophyta mainly was dominated in the south of Dianchi lake. In the wet season, Microcystis minutissima of Cyanophyta was the dominant species all the area, while Limnothrix redekei of Cyanophyta was second dominant. Proteobacteria and Bacteroidetes were the dominant phyla among bacterioplankton. The community structure of bacterioplankton was influenced by Cyanophyta and Bacillariophyta. Cyanophyta had a major influence on Pseudomonas, Acinetobacter of Proteobacteria, and Flavobacterium of Bacteroidetes. Bacillariophyta showed a strong correlation with Gemmobacter, Stenotrophomonas, and Aeromonas of Proteobacteria. Cyanophyta and Bacillariophyta produced the most significant impact on predicted functional genes of bacterioplankton, and the predicted functional genes of the samples were different in different seasons. Cell densities of Cyanophyta were positively related to metabolism-predicted functional genes of bacterioplankton. Bacillariophyta and Cryptophyta had an impact on most of the cellular processes and signaling predicted functional genes. Bacterioplankton-predicted functional gene information storage and processing were significantly affected by cell densities of Chlorophyta. Therefore, the analysis of the phytoplankton community and the bacterioplankton-predicted functional gene in Dianchi lake exerts a great significance in revealing the ecosystem function of plateau lakes and harmful algal bloom control.
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Affiliation(s)
- Yu Zhang
- State Key Joint Laboratory of Environment Simulation and Pollution Control (SKLESPC), School of Environment, Tsinghua University, Beijing, 100084, China
| | - Jiane Zuo
- State Key Joint Laboratory of Environment Simulation and Pollution Control (SKLESPC), School of Environment, Tsinghua University, Beijing, 100084, China.
| | - Alisa Salimova
- State Key Joint Laboratory of Environment Simulation and Pollution Control (SKLESPC), School of Environment, Tsinghua University, Beijing, 100084, China
| | - Aijun Li
- Yunnan Environmental Monitoring Center Station, Yunnan, 650100, China
| | - Ling Li
- Kunming Science and Technology Co., Ltd, Yunnan, 650228, China
| | - Di Li
- State Key Joint Laboratory of Environment Simulation and Pollution Control (SKLESPC), School of Environment, Tsinghua University, Beijing, 100084, China
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Profiling of Sediment Microbial Community in Dongting Lake before and after Impoundment of the Three Gorges Dam. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2016; 13:ijerph13060617. [PMID: 27338434 PMCID: PMC4924074 DOI: 10.3390/ijerph13060617] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2016] [Revised: 06/09/2016] [Accepted: 06/09/2016] [Indexed: 11/25/2022]
Abstract
The sediment microbial community in downstream-linked lakes can be affected by the operation of large-scale water conservancy projects. The present study determined Illumina reads (16S rRNA gene amplicons) to analyze and compare the bacterial communities from sediments in Dongting Lake (China) before and after impoundment of the Three Gorges Dam (TGD), the largest hydroelectric project in the world. Bacterial communities in sediment samples in Dongting Lake before impoundment of the TGD (the high water period) had a higher diversity than after impoundment of the TGD (the low water period). The most abundant phylum in the sediment samples was Proteobacteria (36.4%–51.5%), and this result was due to the significant abundance of Betaproteobacteria and Deltaproteobacteria in the sediment samples before impoundment of the TGD and the abundance of Gammaproteobacteria in the sediment samples after impoundment of the TGD. In addition, bacterial sequences of the sediment samples are also affiliated with Acidobacteria (11.0% on average), Chloroflexi (10.9% on average), Bacteroidetes (6.7% on average), and Nitrospirae (5.1% on average). Variations in the composition of the bacterial community within some sediment samples from the river estuary into Dongting Lake were related to the pH values. The bacterial community in the samples from the three lake districts of Dongting Lake before and after impoundment of the TGD was linked to the nutrient concentration.
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Diverse Reductive Dehalogenases Are Associated with Clostridiales-Enriched Microcosms Dechlorinating 1,2-Dichloroethane. BIOMED RESEARCH INTERNATIONAL 2015; 2015:242856. [PMID: 26273600 PMCID: PMC4529907 DOI: 10.1155/2015/242856] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2014] [Accepted: 03/06/2015] [Indexed: 11/17/2022]
Abstract
The achievement of successful biostimulation of active microbiomes for the cleanup of a polluted site is strictly dependent on the knowledge of the key microorganisms equipped with the relevant catabolic genes responsible for the degradation process. In this work, we present the characterization of the bacterial community developed in anaerobic microcosms after biostimulation with the electron donor lactate of groundwater polluted with 1,2-dichloroethane (1,2-DCA). Through a multilevel analysis, we have assessed (i) the structural analysis of the bacterial community; (ii) the identification of putative dehalorespiring bacteria; (iii) the characterization of functional genes encoding for putative 1,2-DCA reductive dehalogenases (RDs). Following the biostimulation treatment, the structure of the bacterial community underwent a notable change of the main phylotypes, with the enrichment of representatives of the order Clostridiales. Through PCR targeting conserved regions within known RD genes, four novel variants of RDs previously associated with the reductive dechlorination of 1,2-DCA were identified in the metagenome of the Clostridiales-dominated bacterial community.
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Tian C, Liu Z, Zhang Y, Li B, Cao W, Lu H, Duan N, Zhang L, Zhang T. Hydrothermal liquefaction of harvested high-ash low-lipid algal biomass from Dianchi Lake: effects of operational parameters and relations of products. BIORESOURCE TECHNOLOGY 2015; 184:336-343. [PMID: 25466998 DOI: 10.1016/j.biortech.2014.10.093] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Revised: 10/16/2014] [Accepted: 10/18/2014] [Indexed: 06/04/2023]
Abstract
Hydrothermal liquefaction (HTL) allows a direct conversion of algal biomass into biocrude oil, not only solving the environmental issues caused by the over-growing algae but also producing renewable energy. This study reports HTL of algae after separation from eutrophicated Dianchi Lake in China. Conversion efficiency was studied under different operational conditions via an orthogonal design, including holding temperature (HT) (260-340 °C), retention time (RT) (30-90 min) and total solid (TS) (10-20%). A highest biocrude oil yield (18.4%, dry ash-free basis, daf) was achieved at 300 °C, 60 min, and 20% (TS), due to the low contents of lipids (1.9%, daf) and proteins (24.8%, daf), and high contents of ash (41.6%, dry basis) and carbohydrates (71.8%, daf). Operational parameters significantly affected the biocrude yields, and chemical distribution of HTL products. The biocrude production also related to other HTL products, and involved chemical reactions, such as deoxygenation and/or denitrogenation.
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Affiliation(s)
- Chunyan Tian
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Zhidan Liu
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China.
| | - Yuanhui Zhang
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China; Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Baoming Li
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Wei Cao
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Haifeng Lu
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Na Duan
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Li Zhang
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
| | - Tingting Zhang
- Laboratory of Environment-Enhancing Energy (E2E) and Key Laboratory of Agricultural Engineering in Structure and Environment, Ministry of Agriculture, College of Water Resources and Civil Engineering, China Agricultural University, Beijing 100083, China
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