Xylan-hydrolyzing thermotolerant Candida tropicalis HNMA-1 for bioethanol production from sugarcane bagasse hydrolysate

Isolation of Novel Yeast from Coconut (Cocos nucifera L.) Water and Phenotypic Examination as the Potential Parameters in Bioethanol Production

Yeast is a fermentation agent for producing bioethanol as an environmentally friendly alternative energy. Therefore, this study aims to find novel yeasts with the capability to persevere under acidic, high temperature, and high sugar content conditions, which are required in the bioethanol industry. The yeasts were isolated and identified from coconut (Cocos nucifera L.) water by a DNA sequencing method and phenotypic test. Yeast isolation has been completed with a serial dilution procedure and purification was conducted with HiPurA Genomic DNA Purification Spin Kits, which were analyzed by DNA Sequencing. The phenotypic test was carried out with thermotolerant (30 °C and 41 °C), high acidity (lactic acid), and sugar content (molasses 35 °brix) parameters in the media as the initial step of yeast ability screening. Based on the results, the three species of Candida tropicalis K5 (Candida tropicalis strain L2), K15 (Candida tropicalis strain MYA-3404), and K20 (Candida tropicalis strain Y277) obtained met the phenotypic standards. This showed that the yeasts have the potential to produce molasses-based bioethanol.

Impact of hfq and sigE on the tolerance of Zymomonas mobilis ZM4 to furfural and acetic acid stresses

Zymomonas mobilis, as an ethanologenic microorganism with many desirable industrial features, faces crucial obstacles in the lignocellulosic ethanol production process. A significant hindrance occurs during the pretreatment procedure that not only produces fermentable sugars but also releases severe toxic compounds. As diverse parts of regulation networks are involved in different aspects of complicated tolerance to inhibitors, we developed ZM4-hfq and ZM4-sigE strains, in which hfq and sigE genes were overexpressed, respectively. ZM4-hfq is a transcription regulator and ZM4-sigE is a transcription factor that are involved in multiple stress responses. In the present work, by overexpressing these two genes, we evaluated their impact on the Z. mobilis tolerance to furfural, acetic acid, and sugarcane bagasse hydrolysates. Both recombinant strains showed increased growth rates and ethanol production levels compared to the parental strain. Under a high concentration of furfural, the growth rate of ZM4-hfq was more inhibited compared to ZM4-sigE. More precisely, fermentation performance of ZM4-hfq revealed that the yield of ethanol production was less than that of ZM4-sigE, because more unused sugar had remained in the medium. In the case of acetic acid, ZM4-sigE was the superior strain and produced four and two-fold more ethanol compared to the parental strain and ZM4-hfq, respectively. Comparison of inhibitor tolerance between single and multiple toxic inhibitors in the fermentation of sugarcane bagasse hydrolysate by ZM4-sigE strain showed similar results. In addition, ethanol production performance was considerably higher in ZM4-sigE as well. Finally, the results of the qPCR analysis suggested that under both furfural and acetic acid treatment experiments, overproduction of both hfq and sigE improves the Z. mobilis tolerance and its ethanol production capability. Overall, our study showed the vital role of the regulatory elements to overcome the obstacles in lignocellulosic biomass-derived ethanol and provide a platform for further improvement by directed evolution or systems metabolic engineering tools.

A reconciliation of genome-scale metabolic network model of Zymomonas mobilis ZM4

Zymomonas mobilis ZM4 has recently been used for a variety of biotechnological purposes. To rationally enhance its metabolic performance, a reliable genome-scale metabolic network model (GEM) of this organism is required. To this end, we reconstructed a genome-scale metabolic model (iHN446) for Z. mobilis, which involves 446 genes, 859 reactions, and 894 metabolites. We started by first reconciling the existing GEMs previously constructed for Z. mobilis to obtain a draft network. Next, recent gene annotations, up-to-date literature, physiological data and biochemical databases were used to upgrade the network. Afterward, the draft network went through a curative and iterative process of gap-filling by computational tools and manual refinement. The final model was evaluated using experimental data and literature information. We next applied this model as a platform for analyzing the links between transcriptome-flux and transcriptome-metabolome. We found that experimental observations were in agreement with the predicted results from our final GEM. Taken together, this comprehensive model (iHN446) can be utilized for studying metabolism in Z. mobilis and finding rational targets for metabolic engineering applications.

l-asparaginase production and enhancement by Sarocladium strictum: In vitro evaluation of anti-cancerous properties

AIMS

Utilization of l-asparaginase has been one of the effective strategies for the treatment of lymphoblastic leukaemia. Since the currently used bacterial l-asparaginase causes side effects, searching for new enzyme sources has been an active field of research. This study focuses on the characterization of an l-asparaginase-producing fungal strain.

METHODS AND RESULTS

Sarocladium strictum was identified as a potent enzyme-producing strain. For the enhancement of enzyme production, we used two-level factorial design and response surface methodology. The optimization of significant factors showed a 1·84-fold increase in enzyme production. The K_m and V_max values of the enzyme were 9·74 mmol l^-1 and 8·19 μmol min^-1 . The toxicity of the produced l-asparaginase was measured on K562 and HL60 cancer cell lines and L6 as normal cells. The IC₅₀ values were calculated as 0·4 and 0·5 IU ml^-1 for K562 and HL60 respectively and no significant effect was observed in L6. BrdU proliferation and caspase-3 activity assay in l-asparaginase treated HL60 and K562 cells indicated that cell proliferation rates and apoptotic cell death were reduced.

CONCLUSIONS

The cytotoxic properties of the produced fungal enzyme indicated significant growth inhibition in cancer cells while having a little toxic effect on normal cells. The possibility of mass production alongside having suitable cytotoxic and kinetic properties suggest the probable use of the produced l-asparaginase for further researches as a potential chemotherapeutic agent.

SIGNIFICANCE AND IMPACT OF THE STUDY

The lack of significant l-glutaminase activity and promising toxicity properties in S. strictum and the closer evolutionary relativeness of fungi enzymes to human enzymes compared to bacterial enzymes suggest a new source with lower toxicity and anti-cancerous properties, causing less side effect problems.

Evaluation of heavy petroleum degradation using bacterial-fungal mixed cultures

The use of potent microbial mixed cultures is a promising method for the bioremediation of recalcitrant compounds. In this study, eight molds, three yeasts, and four bacterial isolates were screened from an aged oil-polluted area. An oil degradation assay with various combinations including Bacterial Mixed Culture (BMC), Fungal Mixed Culture (FMC), Fungal-Bacterial Mixed Culture (TMC), and Sequential Fungal-Bacterial Mixed Culture (SMC) was investigated. The results indicated that the SMC culture had the highest yield of degradation (65.96%) in comparison with the degradation yields of TMC, FMC and BMC, which were 59.04%, 56.64%, and 47.56%, respectively. The degradation of saturates, aromatics, resins, and asphaltenes in the crude oil found using the Iatroscan system were, as follows: 64.21%, and 67.63% for aromatics, 72.90%, and 73.59% for saturates, and 53.88% and 58.25% for resins with respect to the TMC and SMC cultures as the superior mixed cultures. The growth rates of yeasts, molds, and bacteria in the TMC and SMC cultures were compared for further evaluation of the role of each microorganism in the degradation. Our findings support the use of mixed cultures in the bioremediation of recalcitrant petroleum pollution.