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Tremble K, Henkel T, Bradshaw A, Domnauer C, Brown LM, Thám LX, Furci G, Aime MC, Moncalvo JM, Dentinger B. A revised phylogeny of Boletaceae using whole genome sequences. Mycologia 2024; 116:392-408. [PMID: 38551379 DOI: 10.1080/00275514.2024.2314963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Accepted: 01/30/2024] [Indexed: 05/01/2024]
Abstract
The porcini mushroom family Boletaceae is a diverse, widespread group of ectomycorrhizal (ECM) mushroom-forming fungi that so far has eluded intrafamilial phylogenetic resolution based on morphology and multilocus data sets. In this study, we present a genome-wide molecular data set of 1764 single-copy gene families from a global sampling of 418 Boletaceae specimens. The resulting phylogenetic analysis has strong statistical support for most branches of the tree, including the first statistically robust backbone. The enigmatic Phylloboletellus chloephorus from non-ECM Argentinian subtropical forests was recovered as a new subfamily sister to the core Boletaceae. Time-calibrated branch lengths estimate that the family first arose in the early to mid-Cretaceous and underwent a rapid radiation in the Eocene, possibly when the ECM nutritional mode arose with the emergence and diversification of ECM angiosperms. Biogeographic reconstructions reveal a complex history of vicariance and episodic long-distance dispersal correlated with historical geologic events, including Gondwanan origins and inferred vicariance associated with its disarticulation. Together, this study represents the most comprehensively sampled, data-rich molecular phylogeny of the Boletaceae to date, establishing a foundation for future robust inferences of biogeography in the group.
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Affiliation(s)
- Keaton Tremble
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Terry Henkel
- Department of Biological Sciences, California State Polytechnic University, Humboldt, Arcata 95521, California
| | - Alexander Bradshaw
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Colin Domnauer
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Lyda M Brown
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
| | - Lê Xuân Thám
- Laboratory for Computation and Applications in Life Sciences, Institute for Computation Science and Artificial Intelligence, Van Lang University, Ho Chi Minh City 700000, Viet Nam
- Faculty of Applied Technology, School of Technology, Van Lang University, Ho Chi Minh City 700000, Viet Nam
| | | | - M Catherine Aime
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47906, USA
| | - Jean-Marc Moncalvo
- Department of Natural History, Royal Ontario Museum and Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Ontario M5S 2C6, Canada
| | - Bryn Dentinger
- Natural History Museum of Utah and School of Biological Sciences, University of Utah, Salt Lake City, Utah 84108, USA
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Vizzini A, Alvarado P, Consiglio G, Marchetti M, Xu J. Family matters inside the order Agaricales: systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny. Stud Mycol 2024; 107:67-148. [PMID: 38600959 PMCID: PMC11003440 DOI: 10.3114/sim.2024.107.02] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/17/2023] [Indexed: 04/12/2024] Open
Abstract
The phylogenetic position of several clitocyboid/pleurotoid/tricholomatoid genera previously considered incertae sedis is here resolved using an updated 6-gene dataset of Agaricales including newly sequenced lineages and more complete data from those already analyzed before. Results allowed to infer new phylogenetic relationships, and propose taxonomic novelties to accommodate them, including up to ten new families and a new suborder. Giacomia (for which a new species from China is here described) forms a monophyletic clade with Melanoleuca (Melanoleucaceae) nested inside suborder Pluteineae, together with the families Pluteaceae, Amanitaceae (including Leucocortinarius), Limnoperdaceae and Volvariellaceae. The recently described family Asproinocybaceae is shown to be a later synonym of Lyophyllaceae (which includes also Omphaliaster and Trichocybe) within suborder Tricholomatineae. The families Biannulariaceae, Callistosporiaceae, Clitocybaceae, Fayodiaceae, Macrocystidiaceae (which includes Pseudoclitopilus), Entolomataceae, Pseudoclitocybaceae (which includes Aspropaxillus), Omphalinaceae (Infundibulicybe and Omphalina) and the new families Paralepistaceae and Pseudoomphalinaceae belong also to Tricholomatineae. The delimitation of the suborder Pleurotineae (= Schizophyllineae) is discussed and revised, accepting five distinct families within it, viz. Pleurotaceae, Cyphellopsidaceae, Fistulinaceae, Resupinataceae and Schizophyllaceae. The recently proposed suborder Phyllotopsidineae (= Sarcomyxineae) is found to encompass the families Aphroditeolaceae, Pterulaceae, Phyllotopsidaceae, Radulomycetaceae, Sarcomyxaceae (which includes Tectella), and Stephanosporaceae, all of them unrelated to Pleurotaceae (suborder Pleurotineae) or Typhulaceae (suborder Typhulineae). The new family Xeromphalinaceae, encompassing the genera Xeromphalina and Heimiomyces, is proposed within Marasmiineae. The suborder Hygrophorineae is here reorganized into the families Hygrophoraceae, Cantharellulaceae, Cuphophyllaceae, Hygrocybaceae and Lichenomphaliaceae, to homogenize the taxonomic rank of the main clades inside all suborders of Agaricales. Finally, the genus Hygrophorocybe is shown to represent a distinct clade inside Cuphophyllaceae, and the new combination H. carolinensis is proposed. Taxonomic novelties: New suborder: Typhulineae Vizzini, Consiglio & P. Alvarado. New families: Aphroditeolaceae Vizzini, Consiglio & P. Alvarado, Melanoleucaceae Locq. ex Vizzini, Consiglio & P. Alvarado, Paralepistaceae Vizzini, Consiglio & P. Alvarado, Pseudoomphalinaceae Vizzini, Consiglio & P. Alvarado, Volvariellaceae Vizzini, Consiglio & P. Alvarado, Xeromphalinaceae Vizzini, Consiglio & P. Alvarado. New species: Giacomia sinensis J.Z. Xu. Stat. nov.: Cantharellulaceae (Lodge, Redhead, Norvell & Desjardin) Vizzini, Consiglio & P. Alvarado, Cuphophyllaceae (Z.M. He & Zhu L. Yang) Vizzini, Consiglio & P. Alvarado, Hygrocybaceae (Padamsee & Lodge) Vizzini, Consiglio & P. Alvarado, Lichenomphaliaceae (Lücking & Redhead) Vizzini, Consiglio & P. Alvarado. New combination: Hygrophorocybe carolinensis (H.E. Bigelow & Hesler) Vizzini, Consiglio & P. Alvarado. New synonyms: Sarcomyxineae Zhu L. Yang & G.S. Wang, Schizophyllineae Aime, Dentinger & Gaya, Asproinocybaceae T. Bau & G.F. Mou. Incertae sedis taxa placed at family level: Aphroditeola Redhead & Manfr. Binder, Giacomia Vizzini & Contu, Hygrophorocybe Vizzini & Contu, Leucocortinarius (J.E. Lange) Singer, Omphaliaster Lamoure, Pseudoclitopilus Vizzini & Contu, Resupinatus Nees ex Gray, Tectella Earle, Trichocybe Vizzini. New delimitations of taxa: Hygrophorineae Aime, Dentinger & Gaya, Phyllotopsidineae Zhu L. Yang & G.S. Wang, Pleurotineae Aime, Dentinger & Gaya, Pluteineae Aime, Dentinger & Gaya, Tricholomatineae Aime, Dentinger & Gaya. Resurrected taxa: Fayodiaceae Jülich, Resupinataceae Jülich. Citation: Vizzini A, Alvarado P, Consiglio G, Marchetti M, Xu J (2024). Family matters inside the order Agaricales: systematic reorganization and classification of incertae sedis clitocyboid, pleurotoid and tricholomatoid taxa based on an updated 6-gene phylogeny. Studies in Mycology 107: 67-148. doi: 10.3114/sim.2024.107.02.
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Affiliation(s)
- A. Vizzini
- Department of Life Sciences and Systems Biology, University of Torino, Viale P.A. Mattioli 25, 10125 Turin, Italy
- Institute for Sustainable Plant Protection (IPSP-SS Turin), C.N.R., Viale P.A. Mattioli, 25, 10125 Turin, Italy
| | - P. Alvarado
- ALVALAB, Dr. Fernando Bongera st., Severo Ochoa bldg. S1.04, 33006 Oviedo, Spain
| | - G. Consiglio
- Via Ronzani 61, Casalecchio di Reno, 40033 Bologna, Italy
| | | | - J. Xu
- Agricultural College, Jilin Agriculture Science and Technology University, Jilin 132101, Jilin Province, P. R. China
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Healy R, Truong C, Castellano M, Bonito G, Trappe J, Caiafa M, Mujic A, Nouhra E, Sánchez-Ramírez S, Smith M. Re-examination of the Southern Hemisphere truffle genus Amylascus ( Pezizaceae, Ascomycota) and characterization of the sister genus Nothoamylascus gen. nov. PERSOONIA 2023; 51:125-151. [PMID: 38665981 PMCID: PMC11041901 DOI: 10.3767/persoonia.2023.51.03] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 06/16/2023] [Indexed: 04/28/2024]
Abstract
Amylascus is a genus of ectomycorrhizal truffles within Pezizaceae that is known from Australia and contains only two described species, A. herbertianus and A. tasmanicus. Species of Amylascus are closely related to truffles (Pachyphlodes, Luteoamylascus) and cup fungi (Plicariella) from the Northern Hemisphere. Here we reevaluate the species diversity of Amylascus and related taxa from southern South America and Australia based on new morphological and molecular data. We identify previously undocumented diversity and morphological variability in ascospore color, ascospore ornamentation, hymenial construction, epithecium structure and the amyloid reaction of the ascus in Melzer's reagent. We redescribe two Amylascus species from Australia and describe seven new Amylascus species, five from South America and two from Australia. This is the first report of Amylascus species from South America. We also describe the new South American genus Nothoamylascus as sister lineage to the Pachyphlodes-Amylascus-Luteoamylascus clade (including Amylascus, Luteoamylascus, Pachyphlodes, and Plicariella). We obtained ITS sequences of mitotic spore mats from Nothoamylascus erubescens gen. & sp. nov. and four of the seven newly described Amylascus species, providing the first evidence of mitotic spore mats in Amylascus. Additional ITS sequences from mitotic spore mats reveal the presence of nine additional undescribed Amylascus and one Nothoamylascus species that do not correspond to any sampled ascomata. We also identify three additional undescribed Amylascus species based on environmental sequences from the feces of two grounddwelling bird species from Chile, Scelorchilus rubecula and Pteroptochos tarnii. Our results indicate that ascomata from Amylascus and Nothoamylascus species are rarely collected, but molecular data from ectomycorrhizal roots and mitotic spore mats indicate that these species are probably common and widespread in southern South America. Finally, we present a time-calibrated phylogeny that is consistent with a late Gondwanan distribution. The time since the most recent common ancestor of: 1) the family Pezizaceae had a mean of 276 Ma (217-337 HPD); 2) the Amylascus-Pachyphlodes-Nothoamylascus-Luteoamylascus clade had a mean of 79 Ma (60-100 HPD); and 3) the Amylascus-Pachyphlodes clade had a mean of 50 Ma (38-62 HPD). The crown age of Pachyphlodes had a mean of 39 Ma (25-42 HPD) and Amylascus had a mean age of 28 Ma (20-37 HPD), falling near the Eocene-Oligocene boundary and the onset of the Antarctic glaciation (c. 35 Ma). Citation: Healy RA, Truong C, Castellano MA, et al. 2023. Re-examination of the Southern Hemisphere truffle genus Amylascus (Pezizaceae, Ascomycota) and characterization of the sister genus Nothoamylascus gen. nov. Persoonia 51: 125-151. doi: 10.3767/persoonia.2023.51.03.
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Affiliation(s)
- R.A. Healy
- Department of Plant Pathology, University of Florida, Gainesville, Florida 32611, USA
| | - C. Truong
- Royal Botanic Gardens Victoria, Birdwood Avenue, Melbourne, Victoria 3004, Australia
| | | | - G. Bonito
- Department of Plant, Soil and Microbial Sciences, Molecular Plant Sciences Building, Michigan State University, East Lansing, Michigan 48824, USA
| | - J. Trappe
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
| | - M.V. Caiafa
- Department of Microbiology and Plant Pathology, University of California Riverside, Riverside, California 92521, USA
| | - A.B. Mujic
- Department of Biology, California State University at Fresno, Fresno, California 93740, USA
| | - E. Nouhra
- Instituto Multidisciplinario de Biología Vegetal (CONICET), Universidad Nacional de Córdoba, Casilla de correo 495, 5000 Córdoba, Argentina
| | - S. Sánchez-Ramírez
- Department of Ecology and Evolutionary Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S 3B2, Canada
| | - M.E. Smith
- Department of Plant Pathology, University of Florida, Gainesville, Florida 32611, USA
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Santamaria B, Verbeken A, Haelewaters D. Mycophagy: A Global Review of Interactions between Invertebrates and Fungi. J Fungi (Basel) 2023; 9:jof9020163. [PMID: 36836278 PMCID: PMC9968043 DOI: 10.3390/jof9020163] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 01/20/2023] [Accepted: 01/23/2023] [Indexed: 01/28/2023] Open
Abstract
Fungi are diverse organisms that occupy important niches in natural settings and agricultural settings, acting as decomposers, mutualists, and parasites and pathogens. Interactions between fungi and other organisms, specifically invertebrates, are understudied. Their numbers are also severely underestimated. Invertebrates exist in many of the same spaces as fungi and are known to engage in fungal feeding or mycophagy. This review aims to provide a comprehensive, global view of mycophagy in invertebrates to bring attention to areas that need more research, by prospecting the existing literature. Separate searches on the Web of Science were performed using the terms "mycophagy" and "fungivore". Invertebrate species and corresponding fungal species were extracted from the articles retrieved, whether the research was field- or laboratory-based, and the location of the observation if field-based. Articles were excluded if they did not list at least a genus identification for both the fungi and invertebrates. The search yielded 209 papers covering seven fungal phyla and 19 invertebrate orders. Ascomycota and Basidiomycota are the most represented fungal phyla whereas Coleoptera and Diptera make up most of the invertebrate observations. Most field-based observations originated from North America and Europe. Research on invertebrate mycophagy is lacking in some important fungal phyla, invertebrate orders, and geographic regions.
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Affiliation(s)
- Brianna Santamaria
- Research Group Mycology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
- Correspondence: (B.S.); (D.H.)
| | - Annemieke Verbeken
- Research Group Mycology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
| | - Danny Haelewaters
- Research Group Mycology, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium
- Faculty of Science, University of South Bohemia, Branišovská 31, 370 05 České Budějovice, Czech Republic
- Centro de Investigaciones Micológicas (CIMi), Universidad Autónoma de Chiriquí, David 0427, Panama
- Correspondence: (B.S.); (D.H.)
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Thomas PW, Thomas HW. Mycorrhizal fungi and invertebrates: Impacts on Tuber melanosporum ascospore dispersal and lifecycle by isopod mycophagy. FOOD WEBS 2022. [DOI: 10.1016/j.fooweb.2022.e00260] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Bach RAK, Brann M, Aime MC. Viability of fungal rhizomorphs used in bird nest construction in tropical rainforests. Symbiosis 2022. [DOI: 10.1007/s13199-022-00856-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Allen JL, Lendemer JC. A call to reconceptualize lichen symbioses. Trends Ecol Evol 2022; 37:582-589. [PMID: 35397954 DOI: 10.1016/j.tree.2022.03.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/10/2022] [Accepted: 03/14/2022] [Indexed: 12/23/2022]
Abstract
Several decades of research across disciplines have overturned historical perspectives of symbioses dominated by binary characterizations of highly specific species-species interactions. This paradigm shift has unlocked the previously underappreciated and overlooked dynamism of fungal mutualisms such as mycorrhizae. Lichens are another example of important fungal mutualisms where reconceptualization is urgently needed to realize their potential as model systems. This reconceptualization requires both an objective synthesis of new data and envisioning a revised integrative approach that unifies the spectrum of ecology and evolution. We propose a ten-theme framework that if pursued would propel lichens to the vanguard of symbiotic theory.
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Affiliation(s)
- Jessica L Allen
- Eastern Washington University, Biology Department, Cheney, WA 99004, USA.
| | - James C Lendemer
- Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126, USA.
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Elliott T, Truong C, Jackson S, Zúñiga C, Trappe J, Vernes K. Mammalian Mycophagy: a Global Review of Ecosystem Interactions Between Mammals and Fungi. Fungal Syst Evol 2022; 9:99-159. [PMID: 36072820 PMCID: PMC9402283 DOI: 10.3114/fuse.2022.09.07] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 04/02/2022] [Indexed: 11/07/2022] Open
Abstract
The consumption of fungi by animals is a significant trophic interaction in most terrestrial ecosystems, yet the role mammals play in these associations has been incompletely studied. In this review, we compile 1 154 references published over the last 146 years and provide the first
comprehensive global review of mammal species known to eat fungi (508 species in 15 orders). We review experimental studies that found viable fungal inoculum in the scats of at least 40 mammal species, including spores from at least 58 mycorrhizal fungal species that remained viable after
ingestion by mammals. We provide a summary of mammal behaviours relating to the consumption of fungi, the nutritional importance of fungi for mammals, and the role of mammals in fungal spore dispersal. We also provide evidence to suggest that the morphological evolution of sequestrate fungal
sporocarps (fruiting bodies) has likely been driven in part by the dispersal advantages provided by mammals. Finally, we demonstrate how these interconnected associations are widespread globally and have far-reaching ecological implications for mammals, fungi and associated plants in most
terrestrial ecosystems.
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Affiliation(s)
- T.F. Elliott
- Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
| | - C. Truong
- Royal Botanic Gardens Victoria, Birdwood Ave, Melbourne, VIC 3004, Australia
| | - S.M. Jackson
- Australian Museum Research Institute, Australian Museum, 1 William St., Sydney, NSW 2010, Australia
| | - C.L. Zúñiga
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria, 04510 Ciudad de México, Mexico
| | - J.M. Trappe
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA
| | - K. Vernes
- Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia
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Jusino MA, Boddy L. Fungal community structure, development and function in decomposing wood. FUNGAL ECOL 2022. [DOI: 10.1016/j.funeco.2022.101177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Ren W, Penttilä R, Kasanen R, Asiegbu FO. Bacteria Community Inhabiting Heterobasidion Fruiting Body and Associated Wood of Different Decay Classes. Front Microbiol 2022; 13:864619. [PMID: 35591994 PMCID: PMC9111749 DOI: 10.3389/fmicb.2022.864619] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/04/2022] [Indexed: 11/13/2022] Open
Abstract
The microbiome of Heterobasidion-induced wood decay of living trees has been previously studied; however, less is known about the bacteria biota of its perennial fruiting body and the adhering wood tissue. In this study, we investigated the bacteria biota of the Heterobasidion fruiting body and its adhering deadwood. Out of 7,462 operational taxonomic units (OTUs), about 5,918 OTUs were obtained from the fruiting body and 5,469 OTUs were obtained from the associated dead wood. Interestingly, an average of 52.6% of bacteria biota in the fruiting body was shared with the associated dead wood. The overall and unique OTUs had trends of decreasing from decay classes 1 to 3 but increasing in decay class 4. The fruiting body had the highest overall and unique OTUs number in the fourth decay class, whereas wood had the highest OTU in decay class 1. Sphingomonas spp. was significantly higher in the fruiting body, and phylum Firmicutes was more dominant in wood tissue. The FAPROTAX functional structure analysis revealed nutrition, energy, degradation, and plant-pathogen-related functions of the communities. Our results also showed that bacteria communities in both substrates experienced a process of a new community reconstruction through the various decay stages. The process was not synchronic in the two substrates, but the community structures and functions were well-differentiated in the final decay class. The bacteria community was highly dynamic; the microbiota activeness, community stability, and functions changed with the decay process. The third decay class was an important turning point for community restructuring. Host properties, environmental factors, and microbial interactions jointly influenced the final community structure. Bacteria community in the fruiting body attached to the living standing tree was suppressed compared with those associated with dead wood. Bacteria appear to spread from wood tissue of the standing living tree to the fruiting body, but after the tree is killed, bacteria moved from fruiting body to wood. It is most likely that some of the resident endophytic bacteria within the fruiting body are either parasitic, depending on it for their nutrition, or are mutualistic symbionts.
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Affiliation(s)
- Wenzi Ren
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Reijo Penttilä
- Natural Resources Institute of Finland (Luke), Helsinki, Finland
| | - Risto Kasanen
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Fred O. Asiegbu
- Department of Forest Sciences, University of Helsinki, Helsinki, Finland
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Brun A, Gutiérrez-Guerrero Y, Magallanes ME, Vidal EC, Karasov WH, Rio CMD. Opportunities lost? Evolutionary causes and ecological consequences of the absence of trehalose digestion in birds. Physiol Biochem Zool 2022; 95:340-349. [DOI: 10.1086/720232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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12
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Jusino MA, Hagemeyer ND, Banik MT, Palmer JM, Lindner DL, Smith ME, Koenig WD, Walters EL. Fungal communities associated with acorn woodpeckers and their excavations. FUNGAL ECOL 2022. [DOI: 10.1016/j.funeco.2022.101154] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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A Culture-Based Study of Micromycetes Isolated from the Urban Nests of Grey Heron (Ardea cinerea) in SW Poland. Animals (Basel) 2022; 12:ani12060676. [PMID: 35327074 PMCID: PMC8944552 DOI: 10.3390/ani12060676] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/04/2022] [Accepted: 03/06/2022] [Indexed: 12/14/2022] Open
Abstract
Simple Summary Fungi inhabiting bird nests may pose a serious threat to living organisms. Therefore, the main goal of the study was to identify cultivable fungi in the nest of grey heron (Ardea cinerea) located near the city centre of Wrocław (Poland). Overall, 10 different fungal species were obtained which were both cosmopolitan and potentially hazardous to humans, homoiothermous animals and plants. The greatest number of fungal species was obtained from the nest fragments with visible fungal growth, and the least from western conifer seed bugs (Leptoglossus occidentalis) inhabiting the nests. The damp chamber allowed isolation of Aspergillus fumigatus, Penicillium coprophilum, and P. griseofulvum as directly related to the occurrence of visible fungal growth on plant fragments of grey heron nests. Abstract There are many positive relationships between micromycetes and birds: They can spread fungal spores, and fungi facilitate cavity woodpecker excavation by preparing and modifying excavation sites. In turn, bird nests are mainly a source of potentially zoopathogenic fungi. The Wrocław city centre hosts the biggest grey heron breeding colony in Poland with at least 240 breeding birds pairs. To assess the possible public health risks associated with bird nests, the goal of the present study was to identify cultivable fungi present in the nests of grey herons (Ardea cinerea) in Wrocław. Additionally, attempts were made to determine whether the obtained species of fungi may pose a potential threat to animal health. Fungi were cultured at 23 and 37 ± 0.5 °C, and identified based on phenotypic and genotypic traits. Moreover, during routine inspection, visible fungal growth in some of the nests was found. Overall, 10 different fungal species were obtained in the study (Alternaria alternata, Aspergillus fumigatus, Botryotrichum piluliferum, Cladosporium cladosporioides, Epicoccum layuense, Mucor circinelloides, M.hiemalis, Penicillium atramentosum, P.coprophilum, and P.griseofulvum). They are both cosmopolitan species and a source of potential threat to humans, homoiothermous animals and plants. The greatest number of fungal species was obtained from the nest fragments with visible fungal growth incubated at 23 °C, and the least from western conifer seed bugs (Leptoglossus occidentalis) inhabiting the nests. The species such as A. fumigatus, P. coprophilum, and P.griseofulvum can be directly related to the occurrence of visible fungal growth on plant fragments of grey heron’s nests.
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Toapanta-Alban CE, Ordoñez ME, Blanchette RA. New Findings on the Biology and Ecology of the Ecuadorian Amazon Fungus Polyporus leprieurii var. yasuniensis. J Fungi (Basel) 2022; 8:jof8020203. [PMID: 35205957 PMCID: PMC8874993 DOI: 10.3390/jof8020203] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Revised: 02/13/2022] [Accepted: 02/15/2022] [Indexed: 02/04/2023] Open
Abstract
Polyporus leprieurii var. yasuniensis is a prolific wood-decay fungus inhabiting the forest floor of one of the most biodiverse places on earth, the Yasuní National Park in Ecuador. Basidiocarps and aerial rhizomorphs are commonly found growing on woody debris distributed along the floor of this forest ecosystem. Because of the extraordinary abundance of this fungus in the tropical rainforest, we carried out investigations to better understand the biological and ecological aspects contributing to its prolific distribution. Data on growth inhibition in paired competition studies with sixteen fungal isolates exemplifies defense mechanisms used to defend its territory, including pseudosclerotial plates and the development of a melanized rhizomorphic mat. Results of biomass loss on eleven types of tropical wood in microcosm experiments demonstrated the broad decay capacity of the fungus. In and ex situ observations provided information on how long rhizomorphs can prevail in highly competitive ecosystems as well as stressful conditions in the laboratory. Finally, high concentrations of metal ions occur on rhizomorphs as compared to colonized wood. Sequestration of metal ions from the environment by the melanized rhizomorphs may offer protection against competitors. The development of melanized rhizomorphs is key to find and colonize new substrates and resist changing environmental conditions.
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Affiliation(s)
| | - María E. Ordoñez
- Fungarium QCAM, Escuela de Ciencias Biológicas, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito 170143, Ecuador;
| | - Robert A. Blanchette
- Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA;
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15
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Dornelles G, Araújo GRS, Rodrigues M, Alves V, Costa RC, Abreu J, Figueiredo-Carvalho MHG, Almeida-Paes R, Frases S. The Harris’ hawk (Parabuteo unicinctus) as a source of pathogenic human yeasts: a potential risk to human health. Future Microbiol 2022; 17:169-175. [DOI: 10.2217/fmb-2021-0166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Aim: Invasive human fungal infections have been a serious public health problem among immunocompromised patients. Wild bird species are related to the eco-epidemiology of some infectious diseases, mainly Cryptococcosis, Histoplasmosis, Aspergillosis, Chlamydiosis, Salmonellosis and allergic diseases. Falconry is the art of training predators for hunting. Nowadays, birds of prey are used as pets, which brings new sources of infections to humans. Materials & methods: We identified fungal pathogenic yeasts, Candida parapsilosis, Debaryomyces hansenii and Rhodotorula mucilaginosa. Conclusion: Study new environmental niches of human pathogens is vitally important to establish preventive actions with the purpose of minimizing the risks of human contamination. Our work describes yeast microbiota from the excreta of Parabuteo unicinctus as a potential hazard for human disease.
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Affiliation(s)
- Gustavo Dornelles
- Laboratório de Biofísica de fungos, Instituto de Biofísica Carlos Chagas Filho, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Glauber RS Araújo
- Laboratório de Biofísica de fungos, Instituto de Biofísica Carlos Chagas Filho, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Marcus Rodrigues
- Laboratório de Biofísica de fungos, Instituto de Biofísica Carlos Chagas Filho, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Vinicius Alves
- Laboratório de Biofísica de fungos, Instituto de Biofísica Carlos Chagas Filho, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Rodrigo C Costa
- Centro de Preservação de Aves de Rapina (CePAR). R. I, 99-59 – Galeão, Rio de Janeiro, Brazil
| | - Junior Abreu
- Centro de Preservação de Aves de Rapina (CePAR). R. I, 99-59 – Galeão, Rio de Janeiro, Brazil
| | - Maria HG Figueiredo-Carvalho
- Laboratório de Micologia, Instituto Nacional de Infectologia Evandro Chagas, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil
| | - Rodrigo Almeida-Paes
- Laboratório de Micologia, Instituto Nacional de Infectologia Evandro Chagas, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil
| | - Susana Frases
- Laboratório de Biofísica de fungos, Instituto de Biofísica Carlos Chagas Filho, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
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16
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Wainhouse M, Boddy L. Making hollow trees: Inoculating living trees with wood-decay fungi for the conservation of threatened taxa - A guide for conservationists. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2021.e01967] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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17
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Money NP. Fungal ecology: Truffle-guzzling birds. Curr Biol 2021; 31:R1591-R1593. [PMID: 34932972 DOI: 10.1016/j.cub.2021.10.061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
A new study of truffle fungi in Patagonia reveals the importance of native bird species in spore dispersal. This has wide implications for the study of animal-fungal symbioses in the Southern Hemisphere.
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Affiliation(s)
- Nicholas P Money
- Western Program, Miami University, Oxford, OH 45056, USA; Department of Biology, Miami University, Oxford, OH 45056, USA.
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18
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Briscoe AG, Nichols S, Hartikainen H, Knipe H, Foster R, Green AJ, Okamura B, Bass D. High-Throughput Sequencing of faeces provides evidence for dispersal of parasites and pathogens by migratory waterbirds. Mol Ecol Resour 2021; 22:1303-1318. [PMID: 34758191 DOI: 10.1111/1755-0998.13548] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Revised: 10/26/2021] [Accepted: 11/02/2021] [Indexed: 11/28/2022]
Abstract
Examination of faecal material has demonstrated how a broad range of organisms are distributed by bird movements. Such research has largely focused on dispersal of plant seeds by frugivores and of freshwater organisms by waterbirds. However, with few exceptions (e.g. avian influenza, Ebola virus), there is a dearth of evidence for transport of parasites and pathogens. High-throughput sequencing methods now provide a powerful means of addressing this knowledge gap by elucidating faecal contents in unprecedented detail. We collected faeces excreted by a range of migratory waterbirds in south-west Spain and pooled faecal DNA to create libraries reflective of feeding behavior. We created sets of libraries using high-throughput metagenomic and amplicon sequencing. For the latter we employed two sets of primers to broadly target the V4 region of the 18S rRNA gene (one set amplifying the region across all eukaryotes, the other excluding amplification of metazoans). Libraries revealed a wide diversity of eukaryotes, including parasites of the faecal producers themselves, parasites of food items, or those incidentally ingested. We also detected novel microbial eukaryotic taxa and found that parasite assemblage profiles were relatively distinct. Comparing the performance of the methods used supports their joint use for future studies of diversity and abundance. Because viable stages of many parasites are likely to be present in faeces, our results suggest significant levels of bird-mediated dispersal of parasites (both from avian and other hosts). Our methods revealed much hidden biodiversity, and allowed identification of the individuals who produced the faecal samples to species level, facilitating the study of interaction networks.
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Affiliation(s)
- Andrew G Briscoe
- Department of Life Sciences, Natural History Museum, London, United Kingdom.,Core Research Laboratories, Natural History Museum, London, United Kingdom
| | - Sarah Nichols
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - Hanna Hartikainen
- Department of Life Sciences, Natural History Museum, London, United Kingdom.,Eawag and Institute for Integrative Biology, Eidgenössische Technische Hochschule (ETH), Zurich, Switzerland
| | - Hazel Knipe
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - Rachel Foster
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - Andy J Green
- Department of Wetland Ecology, Estación Biológica de Doñana, EBD-CSIC, 41092, Sevilla, Spain
| | - Beth Okamura
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - David Bass
- Department of Life Sciences, Natural History Museum, London, United Kingdom.,Centre for Environment, Aquaculture and Fisheries Science (Cefas), Weymouth, UK
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19
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Caiafa MV, Jusino MA, Wilkie AC, Díaz IA, Sieving KE, Smith ME. Discovering the role of Patagonian birds in the dispersal of truffles and other mycorrhizal fungi. Curr Biol 2021; 31:5558-5570.e3. [PMID: 34715015 DOI: 10.1016/j.cub.2021.10.024] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 09/01/2021] [Accepted: 10/11/2021] [Indexed: 01/16/2023]
Abstract
Dispersal is a key process that impacts population dynamics and structures biotic communities. Dispersal limitation influences the assembly of plant and microbial communities, including mycorrhizal fungi and their plant hosts. Mycorrhizal fungi play key ecological roles in forests by feeding nutrients to plants in exchange for sugars, so the dispersal of mycorrhizal fungi spores actively shapes plant communities. Although many fungi rely on wind for spore dispersal, some fungi have lost the ability to shoot their spores into the air and instead produce enclosed belowground fruiting bodies (truffles) that rely on animals for dispersal. The role of mammals in fungal spore dispersal is well documented, but the relevance of birds as dispersal agents of fungi has been understudied, despite the prominence of birds as seed dispersal vectors. Here, we use metagenomics and epifluorescence microscopy to demonstrate that two common, widespread, and endemic Patagonian birds, chucao tapaculos (Scelorchilus rubecula) and black-throated huet-huets (Pteroptochos tarnii), regularly consume mycorrhizal fungi and disperse viable spores via mycophagy. Our metagenomic analysis indicates that these birds routinely consume diverse mycorrhizal fungi, including many truffles, that are symbiotically associated with Nothofagaceae trees that dominate Patagonian forests. Epifluorescence microscopy of fecal samples confirmed that the birds dispersed copious viable spores from truffles and other mycorrhizal fungi. We show that fungi are a common food for both bird species and that this animal-fungi symbiosis is widespread and ecologically important in Patagonia. Our findings indicate that birds may also act as cryptic but critical fungal dispersal agents in other ecosystems.
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Affiliation(s)
- Marcos V Caiafa
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA; Department of Microbiology and Plant Pathology, University of California Riverside, Riverside, CA 92521, USA.
| | - Michelle A Jusino
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA; Center for Forest Mycology Research, USDA Forest Service, Northern Research Station, Madison, WI 53726, USA
| | - Ann C Wilkie
- Soil and Water Sciences Department, University of Florida, Gainesville, FL 32611, USA
| | - Iván A Díaz
- Instituto de Conservación, Biodiversidad y Territorio, Universidad Austral de Chile, Valdivia, Chile
| | - Kathryn E Sieving
- Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL 32611, USA
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
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20
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Abstract
The diets of raptors are some of the best studied and well-known of all bird groups. Raptors are typically carnivores, hunting and feeding on vertebrates and, for some species, invertebrates. Here, we described instances of the Black Kite (Milvus migrans) and Whistling Kite (Haliastur sphenurus) consuming non-native avocado (Persea americana) fruit in commercial orchards in northern Australia, over multiple years. This appears to be the first instance of frugivory by raptors in Australia. We review instances of frugivory for other raptor species globally. This review finds that 29 species of raptor from the families Falconidae, Accipitridae and Cathartidae have been recorded consuming fruit, significantly more than previous reviews.
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21
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Ori F, Menotta M, Leonardi M, Amicucci A, Zambonelli A, Covès H, Selosse MA, Schneider-Maunoury L, Pacioni G, Iotti M. Effect of slug mycophagy on Tuber aestivum spores. Fungal Biol 2021; 125:796-805. [PMID: 34537175 DOI: 10.1016/j.funbio.2021.05.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Revised: 05/05/2021] [Accepted: 05/10/2021] [Indexed: 11/27/2022]
Abstract
Truffles in the genus Tuber produce subterranean fruiting bodies that are not able to actively discharge their spores in the environment. For this reason, truffles depend on mycophagous animals for reproduction. Fungus consumption (mycophagy) is a behaviour typical of both vertebrates and invertebrates. Mammals, especially rodents, are the most studied group of mycophagists and have been found to consume a great variety of fungi. Among invertebrates, mycophagy is documented in arthropods, but rarely in molluscs. In our study we assessed the effect on the morphology and mycorrhizal colonization of Tuber aestivum spores after passage through the gut of slugs (Deroceras invadens) and, for comparison, of a house mouse (Mus musculus). Light, scanning electron and atomic force microscopy revealed that the digestion, especially by slugs, freed spores from the asci and modified their morphology. These are believed to be the reasons why we observed an improvement in oak mycorrhization with the slug and rodent ingested spores in comparison to a fresh spore inoculation. We also demonstrated by molecular barcoding that slugs' guts sampled on a Tuber melanosporum truffle ground contain spores from this species and Tuber brumale, further suggesting that some invertebrates are efficient Tuber spore dispersers.
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Affiliation(s)
- Francesca Ori
- Department of Life, Health and Environmental Science, University of L'Aquila, Via Vetoio, 67100, Coppito, L'Aquila, Italy.
| | - Michele Menotta
- Department of Biomolecular Sciences, University of Urbino Carlo Bo, Via Saffi 2, 61029, Urbino, Italy.
| | - Marco Leonardi
- Department of Life, Health and Environmental Science, University of L'Aquila, Via Vetoio, 67100, Coppito, L'Aquila, Italy.
| | - Antonella Amicucci
- Department of Biomolecular Sciences, University of Urbino Carlo Bo, Via Saffi 2, 61029, Urbino, Italy.
| | - Alessandra Zambonelli
- Department of Agricultural and Food Sciences, University of Bologna, Viale G. Fanin 44, 40127, Bologna, Italy.
| | - Hervé Covès
- Institut de Systématique, Évolution, Biodiversité (UMR 7205 - CNRS, MNHN, UPMC, EPHE), Muséum national d'Histoire naturelle, Sorbonne Universités, 57 rue Cuvier, 75005, Paris, France; Arbre et Paysage 32, 93 Route de Pessan, 32000, Auch, France.
| | - Marc-André Selosse
- Institut de Systématique, Évolution, Biodiversité (UMR 7205 - CNRS, MNHN, UPMC, EPHE), Muséum national d'Histoire naturelle, Sorbonne Universités, 57 rue Cuvier, 75005, Paris, France; Department of Plant Taxonomy and Nature Conservation, University of Gdansk, Wita Stwosza 59, 80-308, Gdansk, Poland.
| | - Laure Schneider-Maunoury
- Institut de Systématique, Évolution, Biodiversité (UMR 7205 - CNRS, MNHN, UPMC, EPHE), Muséum national d'Histoire naturelle, Sorbonne Universités, 57 rue Cuvier, 75005, Paris, France.
| | - Giovanni Pacioni
- Department of Life, Health and Environmental Science, University of L'Aquila, Via Vetoio, 67100, Coppito, L'Aquila, Italy.
| | - Mirco Iotti
- Department of Life, Health and Environmental Science, University of L'Aquila, Via Vetoio, 67100, Coppito, L'Aquila, Italy.
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22
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Fukasawa Y. Ecological impacts of fungal wood decay types: A review of current knowledge and future research directions. Ecol Res 2021. [DOI: 10.1111/1440-1703.12260] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yu Fukasawa
- Graduate School of Agricultural Science Tohoku University Osaki Miyagi Japan
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23
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Taxonomy of the major rhizomorphic species of the "Melanopus group" within Polyporaceae in Yasuní National Park, Ecuador. PLoS One 2021; 16:e0254567. [PMID: 34347816 PMCID: PMC8336857 DOI: 10.1371/journal.pone.0254567] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2020] [Accepted: 06/26/2021] [Indexed: 11/19/2022] Open
Abstract
Yasuní National Park in Ecuador is one of the most biodiverse places on earth. The fungi in this tropical rainforest are also diverse but have received little research attention. This research paper focuses on an important group of fungi in the family Polyporaceae and examines the genera Polyporus, Atroporus, and Neodictyopus that form aerial melanized cord-like structures called rhizomorphs. Phylogenetic analyses, macro and micromorphological descriptions of basidiomata and rhizomorphs, as well as cultural characterization were completed to better understand these ecologically important fungi. Here we describe four new species: Atroporus yasuniensis, Atroporus tagaeri, Neodictyopus sylvaticus, and Polyporus taromenane, and a new variety Polyporus leprieurii var. yasuniensis. The information presented in this study adds important new knowledge about the unusual rhizomorph producing fungi found in Yasuní National Park, Ecuador and other tropical rainforests.
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24
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Grupe AC, Jusino MA, Mujic AB, Spakes-Richter B, Bonito G, Brenneman T, Smith ME. Effects of Field Fumigation and Inoculation With the Pecan Truffle ( Tuber lyonii) on the Fungal Community of Pecan ( Carya illinoinensis) Seedlings Over 5 Years. Front Microbiol 2021; 12:661515. [PMID: 34054763 PMCID: PMC8155716 DOI: 10.3389/fmicb.2021.661515] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 04/09/2021] [Indexed: 11/17/2022] Open
Abstract
Truffle fungi are esteemed for their aromatic qualities and are among the most widely cultivated edible ectomycorrhizal fungi. Here we document a successful method for establishing Tuber lyonii, the pecan truffle, on pecan (Carya illinoinensis) seedlings in a field setting. We assessed the impacts of soil fumigation and varying concentrations of truffle spore inoculum on the ectomycorrhizal fungal and the complete fungal communities as well as the colonization of T. lyonii on pecan roots at three nurseries in Georgia, United States. To identify fungal communities on pecan seedlings, we performed high-throughput amplicon sequencing of the fungal ITS1 rDNA region. Our 5-year long field experiment demonstrates that fumigation and inoculation together resulted in the highest persistence of T. lyonii on pecan roots. While fungal OTU numbers fluctuated over the years of our experiments, there was no statistical support to demonstrate diversification of communities when Shannon diversity metrics were used. However, we did find that older seedlings were less likely to be dominated by T. lyonii compared to younger ones, suggesting successional changes in the fungal community over time. This suggests that transplanting inoculated seedlings after 2 or 3 years post-inoculation is optimal for future truffle propagation efforts. Our results demonstrate that T. lyonii can be established in situ with methods that are compatible with current pecan nursery industry practices and that fungal communities on pecan seedlings vary depending on the experimental treatments used during planting. While the pecan truffle is not yet widely cultivated, our results provide insights for future large-scale cultivation of this and perhaps other Tuber species.
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Affiliation(s)
- Arthur C Grupe
- Department of Plant Pathology, University of Florida, Gainesville, FL, United States
| | - Michelle A Jusino
- Department of Plant Pathology, University of Florida, Gainesville, FL, United States.,Department of Biology, William & Mary, Williamsburg, VA, United States
| | - Alija B Mujic
- Department of Plant Pathology, University of Florida, Gainesville, FL, United States.,Department of Biology, California State University, Fresno, Fresno, CA, United States
| | | | - Gregory Bonito
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI, United States
| | - Tim Brenneman
- Department of Plant Pathology, University of Georgia, Tifton, GA, United States
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida, Gainesville, FL, United States
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25
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Maurice S, Arnault G, Nordén J, Botnen SS, Miettinen O, Kauserud H. Fungal sporocarps house diverse and host-specific communities of fungicolous fungi. THE ISME JOURNAL 2021; 15:1445-1457. [PMID: 33432137 PMCID: PMC8115690 DOI: 10.1038/s41396-020-00862-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 11/23/2020] [Accepted: 11/30/2020] [Indexed: 11/16/2022]
Abstract
Sporocarps (fruit bodies) are the sexual reproductive stage in the life cycle of many fungi. They are highly nutritious and consequently vulnerable to grazing by birds and small mammals, and invertebrates, and can be infected by microbial and fungal parasites and pathogens. The complexity of communities thriving inside sporocarps is largely unknown. In this study, we revealed the diversity, taxonomic composition and host preference of fungicolous fungi (i.e., fungi that feed on other fungi) in sporocarps. We carried out DNA metabarcoding of the ITS2 region from 176 sporocarps of 11 wood-decay fungal host species, all collected within a forest in northeast Finland. We assessed the influence of sporocarp traits, such as lifespan, morphology and size, on the fungicolous fungal community. The level of colonisation by fungicolous fungi, measured as the proportion of non-host ITS2 reads, varied between 2.8-39.8% across the 11 host species and was largely dominated by Ascomycota. Host species was the major determinant of the community composition and diversity of fungicolous fungi, suggesting that host adaptation is important for many fungicolous fungi. Furthermore, the alpha diversity was consistently higher in short-lived and resupinate sporocarps compared to long-lived and pileate ones, perhaps due to a more hostile environment for fungal growth in the latter too. The fungicolous fungi represented numerous lineages in the fungal tree of life, among which a significant portion was poorly represented with reference sequences in databases.
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Affiliation(s)
- Sundy Maurice
- Section for Genetics and Evolutionary Biology, University of Oslo, Blindernveien 31, 0316, Oslo, Norway.
| | - Gontran Arnault
- Section for Genetics and Evolutionary Biology, University of Oslo, Blindernveien 31, 0316, Oslo, Norway
| | - Jenni Nordén
- Norwegian Institute for Nature Research, Gaustadalléen 21, 0349, Oslo, Norway
| | - Synnøve Smebye Botnen
- Section for Genetics and Evolutionary Biology, University of Oslo, Blindernveien 31, 0316, Oslo, Norway
| | - Otto Miettinen
- Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, FI-00014, Helsinki, Finland
| | - Håvard Kauserud
- Section for Genetics and Evolutionary Biology, University of Oslo, Blindernveien 31, 0316, Oslo, Norway
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26
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Elliott TF, Vernes K. Notes on the diets of four rodent species from Goodenough Island. AUSTRALIAN MAMMALOGY 2021. [DOI: 10.1071/am20022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Goodenough Island is in the Milne Bay Province of Papua New Guinea and is located off of New Guinea’s eastern coast. Goodenough Island has a unique yet poorly studied mammal community. Previous dietary study of mycophagous New Guinean forest wallabies showed that Goodenough Island’s endemic black forest wallaby (Dorcopsis atrata) ate at least 12 taxa of fungi. Using spirit collections at the Australian Museum in Sydney, we evaluated and compared fungal diversity in rodent diets on the same island. We sampled diets of four Goodenough Island rodent species (Chiruromys forbesi, Paramelomys platyops, Rattus exulans and Rattus mordax) and show that fungi are dietary components for three of these mammals.
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27
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Elliott TF, Travouillon KJ, Warburton NM, Danks MA, Vernes K. New Guinean bandicoots: new insights into diet, dentition and digestive tract morphology and a dietary review of all extant non-Australian Peramelemorphia. AUSTRALIAN MAMMALOGY 2021. [DOI: 10.1071/am21015] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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28
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Elliott TF, Vernes K. Camera trap detection of mycophagy among co‐occurring vertebrates. AUSTRAL ECOL 2020. [DOI: 10.1111/aec.12988] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Todd F. Elliott
- Ecosystem Management University of New England Armidale New South Wales2351Australia
| | - Karl Vernes
- Ecosystem Management University of New England Armidale New South Wales2351Australia
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29
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Danks MA, Simpson N, Elliott TF, Paine CET, Vernes K. Modeling mycorrhizal fungi dispersal by the mycophagous swamp wallaby ( Wallabia bicolor). Ecol Evol 2020; 10:12920-12928. [PMID: 33304504 PMCID: PMC7713961 DOI: 10.1002/ece3.6873] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 09/05/2020] [Accepted: 09/08/2020] [Indexed: 11/23/2022] Open
Abstract
Despite the importance of mammal-fungal interactions, tools to estimate the mammal-assisted dispersal distances of fungi are lacking. Many mammals actively consume fungal fruiting bodies, the spores of which remain viable after passage through their digestive tract. Many of these fungi form symbiotic relationships with trees and provide an array of other key ecosystem functions. We present a flexible, general model to predict the distance a mycophagous mammal would disperse fungal spores. We modeled the probability of spore dispersal by combining animal movement data from GPS telemetry with data on spore gut-retention time. We test this model using an exemplar generalist mycophagist, the swamp wallaby (Wallabia bicolor). We show that swamp wallabies disperse fungal spores hundreds of meters-and occasionally up to 1,265 m-from the point of consumption, distances that are ecologically significant for many mycorrhizal fungi. In addition to highlighting the ecological importance of swamp wallabies as dispersers of mycorrhizal fungi in eastern Australia, our simple modeling approach provides a novel and effective way of empirically describing spore dispersal by a mycophagous animal. This approach is applicable to the study of other animal-fungi interactions in other ecosystems.
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Affiliation(s)
- Melissa A. Danks
- Centre for Ecosystem ManagementEdith Cowan UniversityJoondalupWAAustralia
| | - Natalie Simpson
- Environmental and Rural ScienceUniversity of New EnglandArmidaleNSWAustralia
| | - Todd F. Elliott
- Environmental and Rural ScienceUniversity of New EnglandArmidaleNSWAustralia
| | - C. E. Timothy Paine
- Environmental and Rural ScienceUniversity of New EnglandArmidaleNSWAustralia
| | - Karl Vernes
- Environmental and Rural ScienceUniversity of New EnglandArmidaleNSWAustralia
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Koch RA, Liu J, Brann M, Jumbam B, Siegel N, Aime MC. Marasmioid rhizomorphs in bird nests: Species diversity, functional specificity, and new species from the tropics. Mycologia 2020; 112:1086-1103. [PMID: 32897841 DOI: 10.1080/00275514.2020.1788892] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
In tropical and subtropical rainforests, vegetative fungal rhizomorphs from the Marasmiineae are routinely used as construction material in bird nests. Because rhizomorphs seldom produce mushrooms within nests, the fungal species involved remain largely unknown. In turn, this limitation has prevented us from resolving broader questions such as whether specific fungal species are selected by birds for different functional roles (i.e., attachment, or parasite control). To fill some of these gaps, we collected 74 rhizomorph-containing bird nests from the Neo- and Afrotropics and used nuc rDNA internal transcribed spacer ITS1-5.8S-ITS2 (ITS) sequences to discriminate between rhizomorph-forming species. In total we recovered 25 Marasmiineae species used by birds in nest construction, none of which were shared between the Neotropics and the Afrotropics. We also collected Marasmiineae basidiomes in the vicinity of nests and used ITS sequences to match these sporulating morphs with nest rhizomorphs for nine species. Basidiomes from an additional five species were found fruiting from rhizomorphs incorporated within bird nests. Finally, an additional six species were putatively identified based on publicly available sequence data. Rhizomorphs of five species were found to be utilized almost exclusively as lining material in nests. Lining material comes in direct contact with nestlings and is hypothesized to play a role in parasite control. Rhizomorphs from 10 species were used to attach and anchor nests to substrates; we matched six of those to fruiting litter trap-forming species collected in the understory. Litter traps hold large quantities of fallen litter material, suggesting that birds may preferentially use rhizomorphs that are adapted to bearing heavy loads for nest attachment. Finally, we describe two species of Marasmius-M. neocrinis-equi, sp. nov., and M. nidus-avis, sp. nov.-that are commonly found associated with bird nests and show that rhizomorph production is common across the genus.
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Affiliation(s)
- Rachel A Koch
- Department of Botany and Plant Pathology, Purdue University , West Lafayette, Indiana 47907
| | - Jingyu Liu
- Department of Botany and Plant Pathology, Purdue University , West Lafayette, Indiana 47907
| | - Mia Brann
- Department of Botany and Plant Pathology, Purdue University , West Lafayette, Indiana 47907
| | - Blaise Jumbam
- Department of Botany and Plant Pathology, Purdue University , West Lafayette, Indiana 47907
| | - Noah Siegel
- 25 Prospect Hill Road, Royalston , Massachusetts 01368
| | - M Catherine Aime
- Department of Botany and Plant Pathology, Purdue University , West Lafayette, Indiana 47907
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Elliott TF, Georgiev AV, Lokasola AL, Smith ME. Hysterangium bonobo: A newly described truffle species that is eaten by bonobos in the Democratic Republic of Congo. Mycologia 2020; 112:1203-1211. [PMID: 32886571 DOI: 10.1080/00275514.2020.1790234] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Many animals have been shown to eat fungi and most truffle-like fungi depend on animals for spore dispersal via mycophagy. Although these interactions are widespread, they are understudied in many habitats. In this study, we show that bonobos (Pan paniscus) forage and feed on an undescribed truffle species in the rainforests of the Democratic Republic of Congo. Based on morphological and molecular assessment of collections, we show that the species eaten by bonobos is a previously undescribed taxon described here as Hysterangium bonobo. This species is known in the local Bantu language (Bongando) as simbokilo and is used for baiting traps to catch several species of small mammals. Our findings highlight the need for further research into mycophagy and systematics of sequestrate fungi in Africa.
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Affiliation(s)
- Todd F Elliott
- Ecosystem Management, University of New England , Armidale, New South Wales 2351, Australia
| | | | - Albert Lotana Lokasola
- Vie Sauvage, Kokolopori Bonobo Reserve, Province Equateur , Democratic Republic of Congo
| | - Matthew E Smith
- Department of Plant Pathology, University of Florida , Gainesville, Florida 32611
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Elliott TF, Townley S, Johnstone C, Meek P, Gynther I, Vernes K. The endangered Hastings River mouse ( Pseudomys oralis) as a disperser of ectomycorrhizal fungi in eastern Australia. Mycologia 2020; 112:1075-1085. [PMID: 32678700 DOI: 10.1080/00275514.2020.1777383] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Rodents are the most widespread and diverse order of vertebrate mycophagists and are key to the dispersal of mycorrhizal fungi. Rodents consume and subsequently disperse fungi through their feces on every continent except Antarctica. This study examines the fungal taxa consumed by the Hastings River mouse (Pseudomys oralis), an endangered Australian endemic rodent from the family Muridae. We analyzed 251 fecal samples collected over a 19-year period between 1993 and 2012 at sites throughout the distribution of the animal in New South Wales and Queensland. We show that at least 16 genera of mycorrhizal fungi are eaten by this species and that it is therefore playing an important role as a vector of ectomycorrhizal truffle-like fungi in eastern Australia. Similar to the fungal diets of other mammals in eastern Australia, seasonal fungal consumption was greatest in autumn and winter. The dietary diversity of P. oralis also appeared to follow a geographic trend from south to north; samples collected at sites in the southern part of the species' range had greater diversity than those from sites in the northern part of the range, and overall, diets from southern sites yielded more fungal taxa than did northern sites. This study provides novel insights into the diet of P. oralis and highlights the importance of previously overlooked ecosystem services this species provides through its dispersal of mycorrhizal fungi.
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Affiliation(s)
- Todd F Elliott
- Ecosystem Management, School of Environmental and Rural Science, University of New England , Armidale, NSW 2351, Australia
| | - Sally Townley
- Coffs Harbour City Council , Corner Coff and Castle Streets, Coffs Harbour, NSW 2450, Australia
| | - Charmaine Johnstone
- Ecosystem Management, School of Environmental and Rural Science, University of New England , Armidale, NSW 2351, Australia
| | - Paul Meek
- Ecosystem Management, School of Environmental and Rural Science, University of New England , Armidale, NSW 2351, Australia.,Vertebrate Pest Research Unit , New South Wales Department of Primary Industries, Corner Gordon and Hood St, Coffs Harbour, NSW 2450, Australia
| | - Ian Gynther
- Threatened Species Operations, Department of Environment and Science, Bellbowrie, QLD 4070, Australia.,Biodiversity and Geosciences Program , Queensland Museum, South Brisbane, QLD 4101, Australia
| | - Karl Vernes
- Ecosystem Management, School of Environmental and Rural Science, University of New England , Armidale, NSW 2351, Australia
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