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Yu L, Jia R, Liu S, Li S, Zhong S, Liu G, Zeng RJ, Rensing C, Zhou S. Ferrihydrite-mediated methanotrophic nitrogen fixation in paddy soil under hypoxia. ISME COMMUNICATIONS 2024; 4:ycae030. [PMID: 38524761 PMCID: PMC10960957 DOI: 10.1093/ismeco/ycae030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/21/2024] [Accepted: 02/29/2024] [Indexed: 03/26/2024]
Abstract
Biological nitrogen fixation (BNF) by methanotrophic bacteria has been shown to play an important role in maintaining fertility. However, this process is still limited to aerobic methane oxidation with sufficient oxygen. It has remained unknown whether and how methanotrophic BNF proceeds in hypoxic environments. Herein, we incubated paddy soils with a ferrihydrite-containing mineral salt medium to enrich methanotrophic bacteria in the presence of methane (20%, v/v) under oxygen constraints (0.27%, v/v). The resulting microcosms showed that ferrihydrite-dependent aerobic methane oxidation significantly contributed (81%) to total BNF, increasing the 15N fixation rate by 13-fold from 0.02 to 0.28 μmol 15N2 (g dry weight soil) -1 d-1. BNF was reduced by 97% when ferrihydrite was omitted, demonstrating the involvement of ferrihydrite in methanotrophic BNF. DNA stable-isotope probing indicated that Methylocystis, Methylophilaceae, and Methylomicrobium were the dominant methanotrophs/methylotrophs that assimilated labeled isotopes (13C or 15N) into biomass. Metagenomic binning combined with electrochemical analysis suggested that Methylocystis and Methylophilaceae had the potential to perform methane-induced BNF and likely utilized riboflavin and c-type cytochromes as electron carriers for ferrihydrite reduction. It was concluded that ferrihydrite mediated methanotrophic BNF by methanotrophs/methylotrophs solely or in conjunction with iron-reducing bacteria. Overall, this study revealed a previously overlooked yet pronounced coupling of iron-dependent aerobic methane oxidation to BNF and improves our understanding of methanotrophic BNF in hypoxic zones.
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Affiliation(s)
- Linpeng Yu
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Rong Jia
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Key Laboratory of Land Resources Evaluation and Monitoring in Southwest China, Ministry of Education, Sichuan Normal University, Chengdu, Sichuan Province 610066, China
| | - Shiqi Liu
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shuan Li
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Sining Zhong
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Guohong Liu
- Agricultural Bio-resources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou 350003, China
| | - Raymond Jianxiong Zeng
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Christopher Rensing
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shungui Zhou
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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2
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Bergström L, Fredriksson R, Bergström U, Rydin E, Kumblad L. Fish community responses to restoration of a eutrophic coastal bay. AMBIO 2024; 53:109-125. [PMID: 37542612 PMCID: PMC10692049 DOI: 10.1007/s13280-023-01907-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 05/15/2023] [Accepted: 07/05/2023] [Indexed: 08/07/2023]
Abstract
Interest in coastal restoration measures is increasing, but information about subsequent ecosystem recovery processes is limited. In Björnöfjärden on the Baltic Sea coast, Stockholm archipelago, a pioneering case study to reduce coastal eutrophication led to improvements and initially halved phosphorus levels. Here, we evaluate the effects of the restoration on the local fish assemblage over one decade after the measures. The study gives a unique possibility to evaluate responses of coastal fish to nutrient variables and abatement in a controlled natural setting. Cyprinid abundance decreased and perch partially increased with decreasing turbidity levels, while mean trophic level increased over time in the restored area. Responses were overall weak, likely attributed to an attenuation of the eutrophication abatement effect over time. The results suggest that nutrient reduction gives slow responses in fish compared to alternative measures such as fishing closures.
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Affiliation(s)
- Lena Bergström
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Box 7018, 750 07, Uppsala, Sweden.
| | - Ronny Fredriksson
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Box 7018, 750 07, Uppsala, Sweden
| | - Ulf Bergström
- Department of Aquatic Resources, Swedish University of Agricultural Sciences, Box 7018, 750 07, Uppsala, Sweden
| | - Emil Rydin
- Stockholm University Baltic Sea Centre, 106 91, Stockholm, Sweden
| | - Linda Kumblad
- Stockholm University Baltic Sea Centre, 106 91, Stockholm, Sweden
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3
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Copetti D, Erba S. A bibliometric review on the Water Framework Directive twenty years after its birth. AMBIO 2024; 53:95-108. [PMID: 37684553 PMCID: PMC10692058 DOI: 10.1007/s13280-023-01918-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 08/04/2023] [Accepted: 08/15/2023] [Indexed: 09/10/2023]
Abstract
The European Water Framework Directive (WFD) is one of the most studied environmental legislations and recently turned twenty. The paper deals with a literature search and analysis of 4120 references related to this Directive. After a period of strong increase in article production (2002-2012) WFD scientific productivity is currently still high (~ 260 papers year-1), suggesting a persistent interest of the scientific community on this issue. Most research supporting the WFD was on water sciences, but contributions were also from governance and socio-economic disciplines. Studies on biological quality elements and rivers were prominent. The WFD implementation has seen a strong participation of scientists from all EU countries, and partially also from outside-EU nations. To improve the EU water policy and management, the paper suggests a greater interconnection between WFD and other EU Directives and indicates some emerging environmental issues to which the Directive should address.
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Affiliation(s)
- Diego Copetti
- National Research Council of Italy - Water Research Institute (CNR- IRSA), Via del Mulino 19, 20861, Brugherio, Monza-Brianza, Italy.
| | - Stefania Erba
- National Research Council of Italy - Water Research Institute (CNR- IRSA), Via del Mulino 19, 20861, Brugherio, Monza-Brianza, Italy
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4
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Xu L, Hao G, Li S, Song F, Zhao Y, Guo P. Prediction and sensitivity analysis of chlorophyll a based on a support vector machine regression algorithm. ENVIRONMENTAL MONITORING AND ASSESSMENT 2023; 195:698. [PMID: 37209292 DOI: 10.1007/s10661-023-11276-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Accepted: 04/19/2023] [Indexed: 05/22/2023]
Abstract
Outbreaks of planktonic algae seriously affect the water quality of rivers and are difficult to control. Based on the analysis of the temporal and spatial variation characteristics of environmental factors, this study uses a support vector machine regression (SVR) algorithm to establish a chlorophyll a (Chl-a) prediction model and conduct Chl-a sensitivity analysis. In 2018, the average Chl-a content was 126.25 ug/L. The maximum total nitrogen (TN) content was 16.68 mg/L and high year-round. The average NH4+-N and total phosphorous (TP) contents were only 0.78 and 0.18 mg/L. The content of NH4+-N was higher in spring and increased significantly along the water flow, while TP decreased slightly along the water flow. We used a radial basis function kernel SVR model and tenfold cross-validation method to optimize parameters. The penalty parameter c was 1.4142, the kernel function parameter g was 1, and the training and verification errors were only 0.032 and 0.067, respectively, indicating a good model fit. Based on a sensitivity analysis of the SVR prediction model, the maximum sensitivity coefficients of Chl-a to TP and WT were 0.571 and 0.394, respectively, and the contributions were 33% and 22%, respectively. The next highest sensitivity coefficients were those of DO (0.28, 16%) and pH (0.243, 14%). The sensitivity coefficients of TN and NH4+-N were the lowest. According to the current water environment pollution conditions, TP is the limiting factor of Chl-a in the Qingshui River, and it is also the main prevention and control factor of phytoplankton outbreak.
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Affiliation(s)
- Li Xu
- School of Energy and Environmental Engineering, Hebei University of Engineering, Handan, 056038, China
- Hebei Key Laboratory of Water Quality Enginerring and Comprehensive Utilization of Water Resources, Zhangjiakou, 075000, China
| | - Guizhen Hao
- Hebei Key Laboratory of Water Quality Enginerring and Comprehensive Utilization of Water Resources, Zhangjiakou, 075000, China.
- Department of Municipal and Environmental Engineering, Hebei University of Architecture, Zhangjiakou, 075000, China.
| | - Simin Li
- School of Energy and Environmental Engineering, Hebei University of Engineering, Handan, 056038, China
| | - Fengzhi Song
- Linyi Architectural Design and Research Institute Co.Ltd, Linyi, 276000, China
| | - Yong Zhao
- School of Energy and Environmental Engineering, Hebei University of Engineering, Handan, 056038, China
- Department of Municipal and Environmental Engineering, Hebei University of Architecture, Zhangjiakou, 075000, China
| | - Peiran Guo
- School of Energy and Environmental Engineering, Hebei University of Engineering, Handan, 056038, China
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Eglite E, Mohm C, Dierking J. Stable isotope analysis in food web research: Systematic review and a vision for the future for the Baltic Sea macro-region. AMBIO 2023; 52:319-338. [PMID: 36269552 PMCID: PMC9589642 DOI: 10.1007/s13280-022-01785-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 06/01/2022] [Accepted: 08/08/2022] [Indexed: 06/16/2023]
Abstract
Food web research provides essential insights into ecosystem functioning, but practical applications in ecosystem-based management are hampered by a current lack of knowledge synthesis. To address this gap, we provide the first systematic review of ecological studies applying stable isotope analysis, a pivotal method in food web research, in the heavily anthropogenically impacted Baltic Sea macro-region. We identified a thriving research field, with 164 publications advancing a broad range of fundamental and applied research topics, but also found structural shortcomings limiting ecosystem-level understanding. We argue that enhanced collaboration and integration, including the systematic submission of Baltic Sea primary datasets to stable isotope databases, would help to overcome many of the current shortcomings, unify the scattered knowledge base, and promote future food web research and science-based resource management. The effort undertaken here demonstrates the value of macro-regional synthesis, in enhancing access to existing data and supporting strategic planning of research agendas.
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Affiliation(s)
- Elvita Eglite
- Marine Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
- Department of Forestry and Natural Resources, Purdue University, 715 West State Street, West Lafayette, IN 47907 USA
| | - Clarissa Mohm
- Marine Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
| | - Jan Dierking
- Marine Ecology, GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
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Chaplin-Kramer R, Chappell MJ, Bennett EM. Un-yielding: Evidence for the agriculture transformation we need. Ann N Y Acad Sci 2023; 1520:89-104. [PMID: 36576483 DOI: 10.1111/nyas.14950] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
There has been a seismic shift in the center of gravity of scientific writing and thinking about agriculture over the past decades, from a prevailing focus on maximizing yields toward a goal of balancing trade-offs and ensuring the delivery of multiple ecosystem services. Maximizing crop yields often results in a system where most benefits accrue to very few (in the form of profits), alongside irreparable environmental harm to agricultural ecosystems, landscapes, and people. Here, we present evidence that an un-yielding, which we define as de-emphasizing the importance of yields alone, is necessary to achieve the goal of a more Food secure, Agrobiodiverse, Regenerative, Equitable and just (FARE) agriculture. Focusing on yields places the emphasis on one particular outcome of agriculture, which is only an intermediate means to the true endpoint of human well-being. Using yields as a placeholder for this outcome ignores the many other benefits of agriculture that people also care about, like health, livelihoods, and a sense of place. Shifting the emphasis to these multiple benefits rather than merely yields, and to their equitable delivery to all people, we find clear scientific evidence of win-wins for people and nature through four strategies that foster FARE agriculture: reduced disturbance, systems reintegration, diversity, and justice (in the form of securing rights to land and other resources). Through a broad review of the current state of agriculture, desired futures, and the possible pathways to reach them, we argue that while trade-offs between some ecosystem services in agriculture are unavoidable, the same need not be true of the end benefits we desire from them.
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Affiliation(s)
- Rebecca Chaplin-Kramer
- Natural Capital Project, Stanford University, Stanford, California, USA.,Institute on the Environment, University of Minnesota, St. Paul, Minnesota, USA
| | - M Jahi Chappell
- Center for Regional Food Systems, Department of Community Sustainability, Michigan State University, East Lansing, Michigan, USA.,Centre for Agroecology, Water and Resilience, Coventry University, Coventry, UK
| | - Elena M Bennett
- Department of Natural Resource Sciences and Bieler School of Environment, McGill University, Montreal, Quebec, Canada
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Guo C, Li S, Li W, Liao C, Zhang T, Liu J, Li L, Sun J, Cai X, Hansen AG. Spatial Variation in the Composition and Diversity of Fishes Inhabiting an Artificial Water Supply Lake, Eastern China. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.921082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
With the intensification of eutrophication, many artificial water supply lakes that act as a biological filter for water diverted from rivers have been built to alleviate water scarcity in Eastern China. In this study, we selected Lake Yanlong, a representative artificial water supply lake in Yancheng City, as our experimental lake to explore how the community composition of fishes changed among different habitat types and assess potential consequences for effective water treatment. From October 2015 to October 2020, we conducted quarterly surveys of fish communities and environmental factors in the Mangshe River (MR; water for lake) compared to four different water treatment zones of Lake Yanlong (PZ, the pretreatment zone with inlet from the MR; EZ, the emergent macrophyte zone; SZ, the submerged macrophyte zone; DZ, the deep purification zone with outlet to urban waterworks). A total of 16,339 individual fish belonging to 11 families and 49 species were collected. Six of the eight dominant species observed across zones were small-bodied fishes. Despite reduced fish species richness, the relative abundance and biomass of fishes tended to be higher in Lake Yanlong relative to the MR. The Shannon-Wiener diversity index, Pielou evenness index, Simpson’s diversity index all decreased from the MR to the DZ in the following sequence: MR < PZ < EZ < SZ < DZ. Analysis of similarities and similarity percentage analysis confirmed that fish communities differed significantly among zones and Coilia ectenes, Carassius auratus, Pseudobrama simony, Hemiculter leucisculus, and Hemiculter bleekeri were the major differentiating species. Mantel’s test and redundancy analysis revealed that water depth, aquatic vegetation coverage, and phytoplankton concentrations were the major factors determining the spatial distribution of fishes when moving from the MR to the DZ of Lake Yanlong. Stocking piscivorous fish can be used as an effective measure to control the abundance of prolific small-bodied fishes in Lake Yanlong. The details backing these findings are important for understanding how the community composition of fishes among habitat types in Lake Yanlong influence water quality, and to develop suitable biomanipulation strategies for the management of fish resources and maintaining proper function of these artificial water supply lakes.
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Kaiser J, Lerch M. Sedimentary faecal lipids as indicators of Baltic Sea sewage pollution and population growth since 1860 AD. ENVIRONMENTAL RESEARCH 2022; 204:112305. [PMID: 34743904 DOI: 10.1016/j.envres.2021.112305] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 10/01/2021] [Accepted: 10/26/2021] [Indexed: 06/13/2023]
Abstract
The stress on the environment is increasing as the human population living on it increases. Water eutrophication, a leading cause of impairment of many freshwater and coastal marine ecosystems in the world, is a typical consequence of anthropogenic pressure on the environment. The Baltic Sea represents an excellent example of eutrophication-related massive bottom water deoxygenation since 1950s, when the nutrient inputs derived from agricultural fertilisers and wastewater discharges increased significantly. Faecal lipids (β-stanols) represent a tool to estimate qualitatively anthropogenic sewage pollution in the environment. The present study shows that a ratio to evaluate sewage pollution based on faecal β-stanols preserved in modern sediments reflects the eutrophication status of the Baltic Sea and rivers from its catchment area, as well as the nutrient inputs in the central Baltic Sea since 1860. A second ratio, which allows differentiating between livestock breed and human faecal matter, reflects human population growth in the Baltic Sea Eastern European countries since 1860, and more specifically in St. Petersburg. Sedimentary faecal biomarkers are thus reliable indicators for both population growth and anthropogenic sewage pollution in the Baltic Sea, and may thus be useful to evaluate the past and present status of this environment.
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Affiliation(s)
- Jérôme Kaiser
- Leibniz Institute for Baltic Sea Research (IOW), Seestrasse 15, 18119, Rostock-Warnemünde, Germany.
| | - Mathias Lerch
- Ecole Polytechnique Fédérale de Lausanne (EPFL), Route Cantonale, 1015 Lausanne, Switzerland; Max Planck Institute for Demographic Research, Konrad-Zuse-Strasse 1, 18057, Rostock, Germany
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Rodgers EM. Adding climate change to the mix: responses of aquatic ectotherms to the combined effects of eutrophication and warming. Biol Lett 2021; 17:20210442. [PMID: 34699738 PMCID: PMC8548078 DOI: 10.1098/rsbl.2021.0442] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 10/04/2021] [Indexed: 12/22/2022] Open
Abstract
The threat of excessive nutrient enrichment, or eutrophication, is intensifying across the globe as climate change progresses, presenting a major management challenge. Alterations in precipitation patterns and increases in temperature are increasing nutrient loadings in aquatic habitats and creating conditions that promote the proliferation of cyanobacterial blooms. The exacerbating effects of climate warming on eutrophication are well established, but we lack an in-depth understanding of how aquatic ectotherms respond to eutrophication and warming in tandem. Here, I provide a brief overview and critique of studies exploring the cumulative impacts of eutrophication and warming on aquatic ectotherms, and provide forward direction using mechanistically focused, multi-threat experiments to disentangle complex interactions. Evidence to date suggests that rapid warming will exacerbate the negative effects of eutrophication on aquatic ectotherms, but gradual warming will induce physiological remodelling that provides protection against nutrients and hypoxia. Moving forward, research will benefit from a greater focus on unveiling cause and effect mechanisms behind interactions and designing treatments that better mimic threat dynamics in nature. This approach will enable robust predictions of species responses to ongoing eutrophication and climate warming and enable the integration of climate warming into eutrophication management policies.
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Affiliation(s)
- Essie M. Rodgers
- School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
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Tedengren M. Eutrophication and the disrupted nitrogen cycle : This article belongs to Ambio's 50th Anniversary Collection. Theme: Eutrophication. AMBIO 2021; 50:733-738. [PMID: 33537965 PMCID: PMC7982364 DOI: 10.1007/s13280-020-01466-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Affiliation(s)
- Michael Tedengren
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden.
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