1
|
Pearce EA, Mazier F, Normand S, Fyfe R, Andrieu V, Bakels C, Balwierz Z, Bińka K, Boreham S, Borisova OK, Brostrom A, de Beaulieu JL, Gao C, González-Sampériz P, Granoszewski W, Hrynowiecka A, Kołaczek P, Kuneš P, Magri D, Malkiewicz M, Mighall T, Milner AM, Möller P, Nita M, Noryśkiewicz B, Pidek IA, Reille M, Robertsson AM, Salonen JS, Schläfli P, Schokker J, Scussolini P, Šeirienė V, Strahl J, Urban B, Winter H, Svenning JC. Substantial light woodland and open vegetation characterized the temperate forest biome before Homo sapiens. SCIENCE ADVANCES 2023; 9:eadi9135. [PMID: 37948521 PMCID: PMC10637746 DOI: 10.1126/sciadv.adi9135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 10/10/2023] [Indexed: 11/12/2023]
Abstract
The extent of vegetation openness in past European landscapes is widely debated. In particular, the temperate forest biome has traditionally been defined as dense, closed-canopy forest; however, some argue that large herbivores maintained greater openness or even wood-pasture conditions. Here, we address this question for the Last Interglacial period (129,000-116,000 years ago), before Homo sapiens-linked megafauna declines and anthropogenic landscape transformation. We applied the vegetation reconstruction method REVEALS to 96 Last Interglacial pollen records. We found that light woodland and open vegetation represented, on average, more than 50% cover during this period. The degree of openness was highly variable and only partially linked to climatic factors, indicating the importance of natural disturbance regimes. Our results show that the temperate forest biome was historically heterogeneous rather than uniformly dense, which is consistent with the dependency of much of contemporary European biodiversity on open vegetation and light woodland.
Collapse
Affiliation(s)
- Elena A. Pearce
- Center for Ecological Dynamics in a Novel Biosphere (ECONOVO) and Center for Biodiversity Dynamics (BIOCHANGE), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
| | - Florence Mazier
- Department of Environmental Geography, CNRS UMR GEODE 5602, University Toulouse Jean Jaurès, Toulouse, France
| | - Signe Normand
- Center for Ecological Dynamics in a Novel Biosphere (ECONOVO) and Center for Biodiversity Dynamics (BIOCHANGE), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Center for Sustainable Landscapes under Global Change (SustainScapes), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Center for Landscape Research in Sustainable Agricultural Futures, Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
| | - Ralph Fyfe
- School of Geography, Earth and Environmental Sciences, University of Plymouth, Plymouth, UK
| | - Valérie Andrieu
- CEREGE, CNRS, IRD, Europôle de l'Arbois, BP 80, F-13545 Aix-en-Provence, France
| | - Corrie Bakels
- Faculty of Archaeology, Leiden University, Einsteinweg 2, 2333 CC, Leiden, Netherlands
| | - Zofia Balwierz
- Department of Geology and Geomorphology, University of Łódź, Narutowicza 88, 90-139 Łódź, Poland
| | | | - Steve Boreham
- Department of Geography, University of Cambridge, Cambridge CB2 3EN, UK
| | - Olga K. Borisova
- Independent researcher, Soloviny str. 4-1-224, 117593, Moscow, Russia
| | - Anna Brostrom
- Department of Geology, Lund University, Sölvegatan 12, SE-223 62 Lund, Sweden
- Gymnasieskolan Knut Hahn, Blasius Königsgatan 27, 37232 Ronneby, Sweden
| | - Jacques-Louis de Beaulieu
- Mediterranean Institute of Marine and Terrestrial Biodiversity and Ecology, Aix-Marseille University, Marseille, France
| | - Cunhai Gao
- Ontario Geological Survey, 933 Ramsey Lake Road, Sudbury, ON P3E 6B5, Canada
| | | | - Wojciech Granoszewski
- Polish Geological Institute, National Research Institute, Carpathian Branch, Skrzatów 1, 31-560 Kraków, Poland
| | - Anna Hrynowiecka
- Polish Geological Institute – National Research Institute, Marine Geology Branch, ul. Kościerska 5, 80-328 Gdańsk, Poland
| | - Piotr Kołaczek
- Climate Change Ecology Research Unit, Faculty of Geographical and Geological Sciences, Adam Mickiewicz University Poznań, Bogumiła Krygowskiego 10, Poznań 61-680, Poland
| | - Petr Kuneš
- Department of Botany, Charles University, Prague, Czechia
| | - Donatella Magri
- Dipartimento di Biologia Ambientale, University of Rome ‘La Sapienza’, Rome, Italy
| | - Małgorzata Malkiewicz
- Laboratory of Paleobotany, Department of Stratigraphical Geology, Institute of Geological Sciences, University of Wroclaw, Cybulskiego 34, 50-205 Wroclaw, Poland
| | - Tim Mighall
- Department of Geography and Environment, School of Geosciences, University of Aberdeen, UK
| | - Alice M. Milner
- Department of Geography, Royal Holloway University of London, Egham, UK
| | - Per Möller
- Department of Geology, Lund University, Sölvegatan 12, SE-223 62 Lund, Sweden
| | - Małgorzata Nita
- Faculty of Natural Sciences, University of Silesia, Będzińska 60, 41-200 Sosnowiec, Poland
| | - Bożena Noryśkiewicz
- Faculty of Earth Sciences and Spatial Management, Nicolaus Copernicus University in Toruń, Lwowska 1, 87-100 Toruń, Poland
| | - Irena Agnieszka Pidek
- Maria Curie-Sklodowska University, Institute of Earth and Environmental Sciences, Al. Krasnicka 2 d, 20-718 Lublin, Poland
| | - Maurice Reille
- Mediterranean Institute of Marine and Terrestrial Biodiversity and Ecology, Aix-Marseille University, Marseille, France
| | - Ann-Marie Robertsson
- Department of Physical Geography and Quaternary Geology, Stockholm University, SE-106 91 Stockholm, Sweden
| | - J. Sakari Salonen
- Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland
| | - Patrick Schläfli
- Institute of Plant Sciences and Oechger Centre for Climate Change Research, University of Bern, Altenbergrain 21, 3013 Bern, Switzerland
| | - Jeroen Schokker
- TNO, Geological Survey of the Netherlands, Postbus 80015, 3508 TA, Utrecht, Netherlands
- Faculty of Science, Department of Earth Sciences, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Paolo Scussolini
- Institute for Environmental Studies, Vrije Universiteit Amsterdam, Amsterdam, Netherlands
| | - Vaida Šeirienė
- Nature Research Centre, Institute of Geology and Geography, Akademijos 2, LT-08412 Vilnius, Lithuania
| | - Jaqueline Strahl
- Landesamt für Bergbau, Geologie und Rohstoffe, Inselstraße 26, 03046 Cottbus, Germany
| | - Brigitte Urban
- Leuphana University Lüneburg, Institute of Ecology, Lüneburg, Germany
| | - Hanna Winter
- Polish Geological Institute, 00-975 Warsaw, Poland
| | - Jens-Christian Svenning
- Center for Ecological Dynamics in a Novel Biosphere (ECONOVO) and Center for Biodiversity Dynamics (BIOCHANGE), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Section for Ecoinformatics and Biodiversity, Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
- Center for Sustainable Landscapes under Global Change (SustainScapes), Department of Biology, Aarhus University, Ny Munkegade 114, DK-8000 Aarhus C, Denmark
| |
Collapse
|
3
|
Chua PYS, Crampton-Platt A, Lammers Y, Alsos IG, Boessenkool S, Bohmann K. Metagenomics: A viable tool for reconstructing herbivore diet. Mol Ecol Resour 2021; 21:2249-2263. [PMID: 33971086 PMCID: PMC8518049 DOI: 10.1111/1755-0998.13425] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 04/08/2021] [Accepted: 05/04/2021] [Indexed: 11/28/2022]
Abstract
Metagenomics can generate data on the diet of herbivores, without the need for primer selection and PCR enrichment steps as is necessary in metabarcoding. Metagenomic approaches to diet analysis have remained relatively unexplored, requiring validation of bioinformatic steps. Currently, no metagenomic herbivore diet studies have utilized both chloroplast and nuclear markers as reference sequences for plant identification, which would increase the number of reads that could be taxonomically informative. Here, we explore how in silico simulation of metagenomic data sets resembling sequences obtained from faecal samples can be used to validate taxonomic assignment. Using a known list of sequences to create simulated data sets, we derived reliable identification parameters for taxonomic assignments of sequences. We applied these parameters to characterize the diet of western capercaillies (Tetrao urogallus) located in Norway, and compared the results with metabarcoding trnL P6 loop data generated from the same samples. Both methods performed similarly in the number of plant taxa identified (metagenomics 42 taxa, metabarcoding 43 taxa), with no significant difference in species resolution (metagenomics 24%, metabarcoding 23%). We further observed that while metagenomics was strongly affected by the age of faecal samples, with fresh samples outperforming old samples, metabarcoding was not affected by sample age. On the other hand, metagenomics allowed us to simultaneously obtain the mitochondrial genome of the western capercaillies, thereby providing additional ecological information. Our study demonstrates the potential of utilizing metagenomics for diet reconstruction but also highlights key considerations as compared to metabarcoding for future utilization of this technique.
Collapse
Affiliation(s)
- Physilia Y S Chua
- Section for Evolutionary Genomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark.,Department of Biology, Faculty of Science, University of Copenhagen, Copenhagen, Denmark
| | | | - Youri Lammers
- Tromsø Museum, UiT - The Arctic University of Norway, Tromsø, Norway
| | - Inger G Alsos
- Tromsø Museum, UiT - The Arctic University of Norway, Tromsø, Norway
| | - Sanne Boessenkool
- Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway
| | - Kristine Bohmann
- Section for Evolutionary Genomics, Globe Institute, University of Copenhagen, Copenhagen, Denmark
| |
Collapse
|
4
|
Schwerk A, Klich D, Wójtowicz E, Olech W. Impact of European Bison Grazing ( Bison bonasus (L.)) on Species and Functional Traits of Carabid Beetle Assemblages in Selected Habitats in Poland. BIOLOGY 2021; 10:biology10020123. [PMID: 33562635 PMCID: PMC7915693 DOI: 10.3390/biology10020123] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Revised: 01/28/2021] [Accepted: 02/01/2021] [Indexed: 11/24/2022]
Abstract
Simple Summary Currently, we are observing a drastic decline in insect biodiversity. The aim of this study was to determine whether grazing by European bison (Bison bonasus (L.)) has potential for the implementation of conservation measures. Therefore, a study on a free-ranging European bison population and captive herds in enclosures was carried out in order to determine whether this animal’s grazing activity impacts species composition and the ecological characteristics of carabid beetle assemblages. No notable influence on the numbers of individuals of carabid beetles could be detected, but there was an indication that high-intensity grazing may cause an increase in the number of species. Increased grazing activity had a stronger influence on the ecological characteristics of the species assemblages than on the species composition. This result indicates that using European bison grazing as a method for nature conservation may have more potential in regulating properties and functions of the ecosystem than in the conservation of specific species or species assemblages of carabid beetles. Abstract Currently we are observing a drastic decline in insect fauna on a large scale. Grazing is regularly used as an ecological method of protecting or restoring special biotopes that are important for species conservation. The European bison (Bison bonasus (L.)) is the largest living wild terrestrial animal in Europe; therefore, a large impact on flora and fauna as a result of its grazing activity can be assumed. There might be potential for implementing conservation measures that employ active grazing. Therefore, a study on a free-ranging European bison population and captive herds in enclosures was carried out in order to determine whether European bison grazing has an impact on carabid beetle assemblages and whether the degree of this impact (if any) depends on the intensity of grazing. No notable influence on numbers of individuals of carabid beetles could be detected, but there was an indication that high-intensity grazing may cause an increase in the number of species. Increased intensity of grazing seems to have only a weak impact on the species assemblage structure, but it has a stronger impact on the composition of functional traits in the assemblage, as demonstrated in particular by the significant impact of captive herds. The stronger relation between grazing intensity and the functional traits of the carabid beetle assemblages than between grazing intensity and assemblage structure indicates that using European bison grazing as a method of ecological engineering in the context of nature conservation may have more potential in regulating properties and functions of the ecosystem than in the conservation of specific species or species assemblages of carabid beetles.
Collapse
Affiliation(s)
- Axel Schwerk
- Institute of Environmental Engineering, Department of Landscape Art, Warsaw University of Life Sciences–SGGW, 02-787 Warsaw, Poland
- Correspondence:
| | - Daniel Klich
- Institute of Animal Sciences, Department of Animal Genetics and Conservation, Warsaw University of Life Sciences–SGGW, 02-787 Warsaw, Poland; (D.K.); (W.O.)
| | | | - Wanda Olech
- Institute of Animal Sciences, Department of Animal Genetics and Conservation, Warsaw University of Life Sciences–SGGW, 02-787 Warsaw, Poland; (D.K.); (W.O.)
| |
Collapse
|
7
|
Kilheffer CR, Underwood HB, Ries L, Raphael J, Leopold DJ. Effects of white-tailed deer ( Odocoileus virginianus) exclusion on plant recovery in overwash fans after a severe coastal storm. AOB PLANTS 2019; 11:plz059. [PMID: 33014323 PMCID: PMC6804481 DOI: 10.1093/aobpla/plz059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2018] [Accepted: 09/13/2019] [Indexed: 06/11/2023]
Abstract
We documented the impacts of an abundant deer population on dune vegetation recovering from severe storm surge on a barrier island through use of permanent plots and a repeated measures analysis. Three years after landfall of the storm, vegetation cover was dominated by American beachgrass, Ammophila breviligulata, though we observed 12 plant species among plots surveyed. We documented significantly greater vegetation cover in fenced than unfenced plots in overwash fans in two consecutive years. The difference in species richness between fenced and unfenced plots was significant, though richness was consistently low (≤4 species per plot) and we did not detect a statistically significant difference between years. Both deer trampling and foraging effects were captured in this study, though separation between these effects was not possible. Because trampling effects are often exacerbated on sandy soils, trampling and foraging effects should be isolated and investigated in future assessments of deer impacts on coastal vegetation. Managing deer to lower abundance may enhance coastal resilience if vegetation is allowed to recover unimpeded by foraging and trampling, though a better understanding of the precise nature of deer impacts on dune vegetation is necessary.
Collapse
Affiliation(s)
- Chellby R Kilheffer
- Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, NY, USA
| | - H Brian Underwood
- US Geological Survey, Patuxent Wildlife Research Center, State University of New York, College of Environmental Science and Forestry, Syracuse, NY, USA
| | - Lindsay Ries
- Fire Island National Seashore, National Park Service, Patchogue, NY, USA
| | - Jordan Raphael
- Fire Island National Seashore, National Park Service, Patchogue, NY, USA
| | - Donald J Leopold
- Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, NY, USA
| |
Collapse
|