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Zeng X, Luo G, Fan Z, Xiao Z, Lu Y, Xiao Q, Hou Z, Tang Q, Zhou Y. Whole genome identification, molecular docking and expression analysis of enzymes involved in the selenomethionine cycle in Cardamine hupingshanensis. BMC PLANT BIOLOGY 2024; 24:199. [PMID: 38500044 PMCID: PMC10949594 DOI: 10.1186/s12870-024-04898-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 03/10/2024] [Indexed: 03/20/2024]
Abstract
BACKGROUND The selenomethionine cycle (SeMTC) is a crucial pathway for the metabolism of selenium. The basic bioinformatics and functions of four enzymes involved in the cycle including S-adenosyl-methionine synthase (MAT), SAM-dependent methyltransferase (MTase), S-adenosyl-homocysteine hydrolase (SAHH) and methionine synthase (MTR), have been extensively reported in many eukaryotes. The identification and functional analyses of SeMTC genes/proteins in Cardamine hupingshanensis and their response to selenium stress have not yet been reported. RESULTS In this study, 45 genes involved in SeMTC were identified in the C. hupingshanensis genome. Phylogenetic analysis showed that seven genes from ChMAT were clustered into four branches, twenty-seven genes from ChCOMT were clustered into two branches, four genes from ChSAHH were clustered into two branches, and seven genes from ChMTR were clustered into three branches. These genes were resided on 16 chromosomes. Gene structure and homologous protein modeling analysis illustrated that proteins in the same family are relatively conserved and have similar functions. Molecular docking showed that the affinity of SeMTC enzymes for selenium metabolites was higher than that for sulfur metabolites. The key active site residues identified for ChMAT were Ala269 and Lys273, while Leu221/231 and Gly207/249 were determined as the crucial residues for ChCOMT. For ChSAHH, the essential active site residues were found to be Asn87, Asp139 and Thr206/207/208/325. Ile204, Ser111/329/377, Asp70/206/254, and His329/332/380 were identified as the critical active site residues for ChMTR. In addition, the results of the expression levels of four enzymes under selenium stress revealed that ChMAT3-1 genes were upregulated approximately 18-fold, ChCOMT9-1 was upregulated approximately 38.7-fold, ChSAHH1-2 was upregulated approximately 11.6-fold, and ChMTR3-2 genes were upregulated approximately 28-fold. These verified that SeMTC enzymes were involved in response to selenium stress to varying degrees. CONCLUSIONS The results of this research are instrumental for further functional investigation of SeMTC in C. hupingshanensis. This also lays a solid foundation for deeper investigations into the physiological and biochemical mechanisms underlying selenium metabolism in plants.
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Affiliation(s)
- Xixi Zeng
- Hubei Key Laboratory of Biological Resources Protection and Utilization, Enshi, China, Enshi
- Hubei Key Laboratory of Selenium Resource Research and Biological Application, Enshi, China, 44500
- College of Forestry and Horticulture, Hubei Minzu University, Enshi, China, 44500
| | - Guoqiang Luo
- College of Biological and Food Engineering, Hubei Minzu University, Enshi, China, 44500
| | - Zhucheng Fan
- College of Biological and Food Engineering, Hubei Minzu University, Enshi, China, 44500
| | - Zhijing Xiao
- Hubei Key Laboratory of Biological Resources Protection and Utilization, Enshi, China, Enshi
- College of Biological and Food Engineering, Hubei Minzu University, Enshi, China, 44500
| | - Yanke Lu
- Hubei Key Laboratory of Biological Resources Protection and Utilization, Enshi, China, Enshi
| | - Qiang Xiao
- College of Forestry and Horticulture, Hubei Minzu University, Enshi, China, 44500
| | - Zhi Hou
- College of Biological and Food Engineering, Hubei Minzu University, Enshi, China, 44500
| | - Qiaoyu Tang
- Hubei Key Laboratory of Biological Resources Protection and Utilization, Enshi, China, Enshi.
- College of Forestry and Horticulture, Hubei Minzu University, Enshi, China, 44500.
- Hubei Engineering Research Center of Selenium Food Nutrition and Health Intelligent Technology, Enshi, China, 44500.
| | - Yifeng Zhou
- Hubei Key Laboratory of Selenium Resource Research and Biological Application, Enshi, China, 44500.
- College of Biological and Food Engineering, Hubei Minzu University, Enshi, China, 44500.
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Tissue Culture—A Sustainable Approach to Explore Plant Stresses. Life (Basel) 2023; 13:life13030780. [PMID: 36983935 PMCID: PMC10057563 DOI: 10.3390/life13030780] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 03/08/2023] [Accepted: 03/10/2023] [Indexed: 03/15/2023] Open
Abstract
Plants are constantly faced with biotic or abiotic stress, which affects their growth and development. Yield reduction due to biotic and abiotic stresses on economically important crop species causes substantial economic loss at a global level. Breeding for stress tolerance to create elite and superior genotypes has been a common practice for many decades, and plant tissue culture can be an efficient and cost-effective method. Tissue culture is a valuable tool to develop stress tolerance, screen stress tolerance, and elucidate physiological and biochemical changes during stress. In vitro selection carried out under controlled environment conditions in confined spaces is highly effective and cheaper to maintain. This review emphasizes the relevance of plant tissue culture for screening major abiotic stresses, drought, and salinity, and the development of disease resistance. Further emphasis is given to screening metal hyperaccumulators and transgenic technological applications for stress tolerance.
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