Gene selection and disease prediction from gene expression data using a two-stage hetero-associative memory

Machine Learning Based Computational Gene Selection Models: A Survey, Performance Evaluation, Open Issues, and Future Research Directions

Gene Expression is the process of determining the physical characteristics of living beings by generating the necessary proteins. Gene Expression takes place in two steps, translation and transcription. It is the flow of information from DNA to RNA with enzymes' help, and the end product is proteins and other biochemical molecules. Many technologies can capture Gene Expression from the DNA or RNA. One such technique is Microarray DNA. Other than being expensive, the main issue with Microarray DNA is that it generates high-dimensional data with minimal sample size. The issue in handling such a heavyweight dataset is that the learning model will be over-fitted. This problem should be addressed by reducing the dimension of the data source to a considerable amount. In recent years, Machine Learning has gained popularity in the field of genomic studies. In the literature, many Machine Learning-based Gene Selection approaches have been discussed, which were proposed to improve dimensionality reduction precision. This paper does an extensive review of the various works done on Machine Learning-based gene selection in recent years, along with its performance analysis. The study categorizes various feature selection algorithms under Supervised, Unsupervised, and Semi-supervised learning. The works done in recent years to reduce the features for diagnosing tumors are discussed in detail. Furthermore, the performance of several discussed methods in the literature is analyzed. This study also lists out and briefly discusses the open issues in handling the high-dimension and less sample size data.

A Novel and Simple Mathematical Transform Improves the Perfomance of Lernmatrix in Pattern Classification

The Lernmatrix is a classic associative memory model. The Lernmatrix is capable of executing the pattern classification task, but its performance is not competitive when compared to state-of-the-art classifiers. The main contribution of this paper consists of the proposal of a simple mathematical transform, whose application eliminates the subtractive alterations between patterns. As a consequence, the Lernmatrix performance is significantly improved. To perform the experiments, we selected 20 datasets that are challenging for any classifier, as they exhibit class imbalance. The effectiveness of our proposal was compared against seven supervised classifiers of the most important approaches (Bayes, nearest neighbors, decision trees, logistic function, support vector machines, and neural networks). By choosing balanced accuracy as a performance measure, our proposal obtained the best results in 10 datasets. The elimination of subtractive alterations makes the new model competitive against the best classifiers, and sometimes beats them. After applying the Friedman test and the Holm post hoc test, we can conclude that within a 95% confidence, our proposal competes successfully with the most effective classifiers of the state of the art.