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For: Wei Z, Zhang S, Jing F. Exploring the interaction patterns among taxa and environments from marine metagenomic data. Quant Biol 2016;4:84-91. [DOI: 10.1007/s40484-016-0071-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Number Cited by Other Article(s)
1
Cao M, Peng Q, Wei ZG, Liu F, Hou YF. EdClust: A heuristic sequence clustering method with higher sensitivity. J Bioinform Comput Biol 2021;20:2150036. [PMID: 34939905 DOI: 10.1142/s0219720021500360] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
2
Wei ZG, Zhang XD, Cao M, Liu F, Qian Y, Zhang SW. Comparison of Methods for Picking the Operational Taxonomic Units From Amplicon Sequences. Front Microbiol 2021;12:644012. [PMID: 33841367 PMCID: PMC8024490 DOI: 10.3389/fmicb.2021.644012] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Accepted: 02/17/2021] [Indexed: 12/31/2022]  Open
3
Wei ZG, Zhang SW, Liu F. smsMap: mapping single molecule sequencing reads by locating the alignment starting positions. BMC Bioinformatics 2020;21:341. [PMID: 32753028 PMCID: PMC7430848 DOI: 10.1186/s12859-020-03698-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2020] [Accepted: 07/23/2020] [Indexed: 01/09/2023]  Open
4
Wei ZG, Zhang SW. DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs. Front Microbiol 2019;10:428. [PMID: 30915052 PMCID: PMC6422886 DOI: 10.3389/fmicb.2019.00428] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2019] [Accepted: 02/19/2019] [Indexed: 12/30/2022]  Open
5
Wei ZG, Zhang SW, Zhang YZ. DMclust, a Density-based Modularity Method for Accurate OTU Picking of 16S rRNA Sequences. Mol Inform 2017;36. [PMID: 28586119 DOI: 10.1002/minf.201600059] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Accepted: 04/25/2017] [Indexed: 11/08/2022]
6
DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs. J Theor Biol 2017;425:80-87. [PMID: 28454900 DOI: 10.1016/j.jtbi.2017.04.019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Revised: 03/28/2017] [Accepted: 04/20/2017] [Indexed: 12/22/2022]
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