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Sonpho E, Mann FG, Levy M, Ross EJ, Guerrero-Hernández C, Florens L, Saraf A, Doddihal V, Ounjai P, Sánchez Alvarado A. Decellularization Enables Characterization and Functional Analysis of Extracellular Matrix in Planarian Regeneration. Mol Cell Proteomics 2021; 20:100137. [PMID: 34416386 PMCID: PMC8503668 DOI: 10.1016/j.mcpro.2021.100137] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Revised: 07/22/2021] [Accepted: 08/10/2021] [Indexed: 10/25/2022] Open
Abstract
The extracellular matrix (ECM) is a three-dimensional network of macromolecules that provides a microenvironment capable of supporting and regulating cell functions. However, only a few research organisms are available for the systematic dissection of the composition and functions of the ECM, particularly during regeneration. We utilized the free-living flatworm Schmidtea mediterranea to develop an integrative approach consisting of decellularization, proteomics, and RNAi to characterize and investigate ECM functions during tissue homeostasis and regeneration. ECM-enriched samples were isolated from planarians, and their proteomes were characterized by LC-MS/MS. The functions of identified ECM components were interrogated using RNA interference. Using this approach, we found that heparan sulfate proteoglycan is essential for tissue regeneration. Our strategy provides an experimental approach for identifying both known and novel ECM components involved in regeneration.
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Affiliation(s)
- Ekasit Sonpho
- Stowers Institute for Medical Research, Kansas City, Missouri, USA; Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand
| | - Frederick G Mann
- Stowers Institute for Medical Research, Kansas City, Missouri, USA; Howard Hughes Medical Institute, Kansas City, Missouri, USA
| | - Michaella Levy
- Stowers Institute for Medical Research, Kansas City, Missouri, USA
| | - Eric J Ross
- Stowers Institute for Medical Research, Kansas City, Missouri, USA; Howard Hughes Medical Institute, Kansas City, Missouri, USA
| | | | - Laurence Florens
- Stowers Institute for Medical Research, Kansas City, Missouri, USA
| | - Anita Saraf
- Stowers Institute for Medical Research, Kansas City, Missouri, USA
| | - Viraj Doddihal
- Stowers Institute for Medical Research, Kansas City, Missouri, USA
| | - Puey Ounjai
- Department of Biology, Faculty of Science, Mahidol University, Bangkok, Thailand; Center of Excellence on Environmental Health and Toxicology (EHT), Office of Higher Education Commission, Ministry of Education, Bangkok, Thailand
| | - Alejandro Sánchez Alvarado
- Stowers Institute for Medical Research, Kansas City, Missouri, USA; Howard Hughes Medical Institute, Kansas City, Missouri, USA.
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2
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Esdaille CJ, Washington KS, Laurencin CT. Regenerative engineering: a review of recent advances and future directions. Regen Med 2021; 16:495-512. [PMID: 34030463 PMCID: PMC8356698 DOI: 10.2217/rme-2021-0016] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/06/2021] [Indexed: 12/20/2022] Open
Abstract
Regenerative engineering is defined as the convergence of the disciplines of advanced material science, stem cell science, physics, developmental biology and clinical translation for the regeneration of complex tissues and organ systems. It is an expansion of tissue engineering, which was first developed as a method of repair and restoration of human tissue. In the past three decades, advances in regenerative engineering have made it possible to treat a variety of clinical challenges by utilizing cutting-edge technology currently available to harness the body's healing and regenerative abilities. The emergence of new information in developmental biology, stem cell science, advanced material science and nanotechnology have provided promising concepts and approaches to regenerate complex tissues and structures.
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Affiliation(s)
- Caldon J Esdaille
- Howard University College of Medicine, Washington, DC 20011, USA
- Connecticut Convergence Institute for Translation in Regenerative Engineering, University of Connecticut Health Center, Farmington, CT 06030, USA
- Raymond & Beverly Sackler Center for Biomedical, Biological, Physical & Engineering Sciences, University of Connecticut Health, Farmington, CT 06030, USA
| | - Kenyatta S Washington
- Connecticut Convergence Institute for Translation in Regenerative Engineering, University of Connecticut Health Center, Farmington, CT 06030, USA
- Raymond & Beverly Sackler Center for Biomedical, Biological, Physical & Engineering Sciences, University of Connecticut Health, Farmington, CT 06030, USA
- Department of Orthopedic Surgery, University of Connecticut Health, Farmington, CT 06030, USA
| | - Cato T Laurencin
- Connecticut Convergence Institute for Translation in Regenerative Engineering, University of Connecticut Health Center, Farmington, CT 06030, USA
- Raymond & Beverly Sackler Center for Biomedical, Biological, Physical & Engineering Sciences, University of Connecticut Health, Farmington, CT 06030, USA
- Department of Orthopedic Surgery, University of Connecticut Health, Farmington, CT 06030, USA
- Department of Chemical & Biomolecular Engineering, University of Connecticut, Storrs, CT 06269, USA
- Department of Biomedical Engineering, University of Connecticut, Storrs, CT 06030, USA
- Department of Materials Science & Engineering, University of Connecticut, Storrs, CT 06269, USA
- Institute of Materials Science, University of Connecticut, Storrs, CT 06269, USA
- Department of Craniofacial Sciences, School of Dental Medicine, University of Connecticut Health, Farmington, CT 06030, USA
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Wei X, Li H, Guo Y, Zhao X, Liu Y, Zou X, Zhou L, Yuan Y, Qin Y, Mao C, Huang G, Yu Y, Deng Q, Feng W, Xu J, Wang M, Liu S, Yang H, Liu L, Liu C, Gu Y. An ATAC-seq Dataset Uncovers the Regulatory Landscape During Axolotl Limb Regeneration. Front Cell Dev Biol 2021; 9:651145. [PMID: 33869207 PMCID: PMC8044901 DOI: 10.3389/fcell.2021.651145] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 02/26/2021] [Indexed: 11/13/2022] Open
Affiliation(s)
- Xiaoyu Wei
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Hanbo Li
- BGI-Shenzhen, Shenzhen, China
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Yang Guo
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | | | - Yang Liu
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Xuanxuan Zou
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Li Zhou
- BGI-Shenzhen, Shenzhen, China
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Yue Yuan
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Yating Qin
- BGI-Shenzhen, Shenzhen, China
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Chunyan Mao
- BGI-Shenzhen, Shenzhen, China
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | | | - Yeya Yu
- BGI-Shenzhen, Shenzhen, China
- BGI College, Zhengzhou University, Zhengzhou, China
| | - Qiuting Deng
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Weimin Feng
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | - Jiangshan Xu
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
| | | | - Shanshan Liu
- BGI-Shenzhen, Shenzhen, China
- BGI-Qingdao, BGI-Shenzhen, Qingdao, China
| | - Huanming Yang
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
- James D. Watson Institute of Genome Sciences, Hangzhou, China
| | - Longqi Liu
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Bay Laboratory, Shenzhen, China
| | - Chuanyu Liu
- BGI-Shenzhen, Shenzhen, China
- Shenzhen Bay Laboratory, Shenzhen, China
| | - Ying Gu
- BGI Education Center, University of Chinese Academy of Sciences, Shenzhen, China
- BGI-Shenzhen, Shenzhen, China
- Guangdong Provincial Key Laboratory of Genome Read and Write, BGI-Shenzhen, Shenzhen, China
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Cox BD, Yun MH, Poss KD. Can laboratory model systems instruct human limb regeneration? Development 2019; 146:146/20/dev181016. [PMID: 31578190 DOI: 10.1242/dev.181016] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Regeneration has fascinated scientists since well before the 20th century revolutions in genetics and molecular biology. The field of regenerative biology has grown steadily over the past decade, incorporating advances in imaging, genomics and genome editing to identify key cell types and molecules involved across many model organisms. Yet for many or most tissues, it can be difficult to predict when and how findings from these studies will advance regenerative medicine. Establishing technologies to stimulate regrowth of a lost or amputated limb with a patterned replicate, as salamanders do routinely, is one of the most challenging directives of tissue regeneration research. Here, we speculate upon what research avenues the field must explore to move closer to this capstone achievement.
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Affiliation(s)
- Ben D Cox
- Regeneration Next, Department of Cell Biology, Duke University School of Medicine, Durham, NC 27710, USA
| | - Maximina H Yun
- Technische Universität Dresden, CRTD/Center for Regenerative Therapies Dresden, Dresden 01307, Germany .,Max Planck Institute for Molecular Cell Biology and Genetics, Dresden 01307, Germany
| | - Kenneth D Poss
- Regeneration Next, Department of Cell Biology, Duke University School of Medicine, Durham, NC 27710, USA
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