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A heterogeneous tag-attachment to the homodimeric type 1 photosynthetic reaction center core protein in the green sulfur bacterium Chlorobaculum tepidum. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1807:803-12. [DOI: 10.1016/j.bbabio.2011.03.007] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2010] [Revised: 03/10/2011] [Accepted: 03/15/2011] [Indexed: 01/26/2023]
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Azai C, Tsukatani Y, Itoh S, Oh-oka H. C-type cytochromes in the photosynthetic electron transfer pathways in green sulfur bacteria and heliobacteria. PHOTOSYNTHESIS RESEARCH 2010; 104:189-199. [PMID: 20091230 DOI: 10.1007/s11120-009-9521-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2009] [Accepted: 12/17/2009] [Indexed: 05/28/2023]
Abstract
Green sulfur bacteria and heliobacteria are strictly anaerobic phototrophs that have homodimeric type 1 reaction center complexes. Within these complexes, highly reducing substances are produced through an initial charge separation followed by electron transfer reactions driven by light energy absorption. In order to attain efficient energy conversion, it is important for the photooxidized reaction center to be rapidly rereduced. Green sulfur bacteria utilize reduced inorganic sulfur compounds (sulfide, thiosulfate, and/or sulfur) as electron sources for their anoxygenic photosynthetic growth. Membrane-bound and soluble cytochromes c play essential roles in the supply of electrons from sulfur oxidation pathways to the P840 reaction center. In the case of gram-positive heliobacteria, the photooxidized P800 reaction center is rereduced by cytochrome c-553 (PetJ) whose N-terminal cysteine residue is modified with fatty acid chains anchored to the cytoplasmic membrane.
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Affiliation(s)
- Chihiro Azai
- Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan
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Imhoff JF, Thiel V. Phylogeny and taxonomy of Chlorobiaceae. PHOTOSYNTHESIS RESEARCH 2010; 104:123-136. [PMID: 20094791 DOI: 10.1007/s11120-009-9510-7] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2009] [Accepted: 11/25/2009] [Indexed: 05/28/2023]
Abstract
Based on phylogenetic relationships found according to gene sequences of the 16S rRNA and the FMO (Fenna-Matthews-Olson protein) genes, and supported by the G + C content of the DNA and sequence signatures, the strains and species of green sulfur bacteria have been grouped into a phylogenetic system. Since properties used previously for classification such as cell morphology, photosynthetic pigments and substrate utilization do not conform with their phylogeny, a reassignment of strains to species, and a rearrangement among the species were necessary. The comparison of the traditional classification system of these bacteria with their phylogenetic relationship yielded a confusing picture. As a consequence of this rearrangement, species of the green sulfur bacteria were classified into the genera Chlorobium, Chlorobaculum, Prosthecochloris, and Chloroherpeton. Strains were assigned to the species according to their phylogenetic similarity and a number of new combinations, and new species were defined. New isolates and also environmental gene sequences fit very well into the established groups or may form new species, some of which have been described and others are awaiting their description. New strains and available gene sequences are included into the phylogenetic system, and a taxonomic classification on the species level is proposed.
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Affiliation(s)
- Johannes F Imhoff
- Institut für Meereswissenschaften IFM-GEOMAR an der Universität Kiel, Düsternbrooker Weg 20, Kiel, Germany.
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Sakurai H, Ogawa T, Shiga M, Inoue K. Inorganic sulfur oxidizing system in green sulfur bacteria. PHOTOSYNTHESIS RESEARCH 2010; 104:163-176. [PMID: 20143161 DOI: 10.1007/s11120-010-9531-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2009] [Accepted: 01/16/2010] [Indexed: 05/28/2023]
Abstract
Green sulfur bacteria use various reduced sulfur compounds such as sulfide, elemental sulfur, and thiosulfate as electron donors for photoautotrophic growth. This article briefly summarizes what is known about the inorganic sulfur oxidizing systems of these bacteria with emphasis on the biochemical aspects. Enzymes that oxidize sulfide in green sulfur bacteria are membrane-bound sulfide-quinone oxidoreductase, periplasmic (sometimes membrane-bound) flavocytochrome c sulfide dehydrogenase, and monomeric flavocytochrome c (SoxF). Some green sulfur bacteria oxidize thiosulfate by the multienzyme system called either the TOMES (thiosulfate oxidizing multi-enzyme system) or Sox (sulfur oxidizing system) composed of the three periplasmic proteins: SoxB, SoxYZ, and SoxAXK with a soluble small molecule cytochrome c as the electron acceptor. The oxidation of sulfide and thiosulfate by these enzymes in vitro is assumed to yield two electrons and result in the transfer of a sulfur atom to persulfides, which are subsequently transformed to elemental sulfur. The elemental sulfur is temporarily stored in the form of globules attached to the extracellular surface of the outer membranes. The oxidation pathway of elemental sulfur to sulfate is currently unclear, although the participation of several proteins including those of the dissimilatory sulfite reductase system etc. is suggested from comparative genomic analyses.
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Affiliation(s)
- Hidehiro Sakurai
- Research Institute for Photosynthetic Hydrogen Production, Kanagawa University, Hiratsuka, Kanagawa, Japan
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SoxAX binding protein, a novel component of the thiosulfate-oxidizing multienzyme system in the green sulfur bacterium Chlorobium tepidum. J Bacteriol 2008; 190:6097-110. [PMID: 18641134 DOI: 10.1128/jb.00634-08] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
From the photosynthetic green sulfur bacterium Chlorobium tepidum (pro synon. Chlorobaculum tepidum), we have purified three factors indispensable for the thiosulfate-dependent reduction of the small, monoheme cytochrome c(554). These are homologues of sulfur-oxidizing (Sox) system factors found in various thiosulfate-oxidizing bacteria. The first factor is SoxYZ that serves as the acceptor for the reaction intermediates. The second factor is monomeric SoxB that is proposed to catalyze the hydrolytic cleavage of sulfate from the SoxYZ-bound oxidized product of thiosulfate. The third factor is the trimeric cytochrome c(551), composed of the monoheme cytochrome SoxA, the monoheme cytochrome SoxX, and the product of the hypothetical open reading frame CT1020. The last three components were expressed separately in Escherichia coli cells and purified to homogeneity. In the presence of the other two Sox factors, the recombinant SoxA and SoxX showed a low but discernible thiosulfate-dependent cytochrome c(554) reduction activity. The further addition of the recombinant CT1020 protein greatly increased the activity, and the total activity was as high as that of the native SoxAX-CT1020 protein complex. The recombinant CT1020 protein participated in the formation of a tight complex with SoxA and SoxX and will be referred to as SAXB (SoxAX binding protein). Homologues of the SAXB gene are found in many strains, comprising roughly about one-third of the thiosulfate-oxidizing bacteria whose sox gene cluster sequences have been deposited so far and ranging over the Chlorobiaciae, Chromatiaceae, Hydrogenophilaceae, Oceanospirillaceae, etc. Each of the deduced SoxA and SoxX proteins of these bacteria constitute groups that are distinct from those found in bacteria that apparently lack SAXB gene homologues.
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Hurt EC, Hauska G. Purification of membrane-bound cytochromes and a photoactive P840 protein complex of the green sulfur bacteriumChlorobium limicolaf.thiosulfatophilum. FEBS Lett 2001. [DOI: 10.1016/0014-5793(84)80225-2] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kostanjevecki V, Brigé A, Meyer TE, Cusanovich MA, Guisez Y, van Beeumen J. A membrane-bound flavocytochrome c-sulfide dehydrogenase from the purple phototrophic sulfur bacterium Ectothiorhodospira vacuolata. J Bacteriol 2000; 182:3097-103. [PMID: 10809687 PMCID: PMC94494 DOI: 10.1128/jb.182.11.3097-3103.2000] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/1999] [Accepted: 03/03/2000] [Indexed: 11/20/2022] Open
Abstract
The amino acid sequence of Ectothiorhodospira vacuolata cytochrome c-552, isolated from membranes with n-butanol, shows that it is a protein of 77 amino acid residues with a molecular mass of 9,041 Da. It is closely related to the cytochrome subunit of Chlorobium limicola f. sp. thiosulfatophilum flavocytochrome c-sulfide dehydrogenase (FCSD), having 49% identity. These data allowed isolation of a 5.5-kb subgenomic clone which contains the cytochrome gene and an adjacent flavoprotein gene as in other species which have an FCSD. The cytochrome subunit has a signal peptide with a normal cleavage site, but the flavoprotein subunit has a signal sequence which suggests that the mature protein has an N-terminal cysteine, characteristic of a diacyl glycerol-modified lipoprotein. The membrane localization of FCSD was confirmed by Western blotting with antibodies raised against Chromatium vinosum FCSD. When aligned according to the three-dimensional structure of Chromatium FCSD, all but one of the side chains near the flavin are conserved. These include the Cys 42 flavin adenine dinucleotide binding site; the Cys 161-Cys 337 disulfide; Glu 167, which modulates the reactivity with sulfite; and aromatic residues which may function as charge transfer acceptors from the flavin-sulfite adduct (C. vinosum numbering). The genetic context of FCSD is different from that in other species in that flanking genes are not conserved. The transcript is only large enough to encode the two FCSD subunits. Furthermore, Northern hybridization showed that the production of E. vacuolata FCSD mRNA is regulated by sulfide. All cultures that contained sulfide in the medium had elevated levels of FCSD RNA compared with cells grown on organics (acetate, malate, or succinate) or thiosulfate alone, consistent with the role of FCSD in sulfide oxidation.
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Affiliation(s)
- V Kostanjevecki
- Laboratory for Protein Biochemistry and Protein Engineering, University of Ghent, 9000 Ghent, Belgium
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Oh-oka H, Iwaki M, Itoh S. Membrane-bound cytochrome cz couples quinol oxidoreductase to the P840 reaction center complex in isolated membranes of the green sulfur bacterium Chlorobium tepidum. Biochemistry 1998; 37:12293-300. [PMID: 9724544 DOI: 10.1021/bi9800799] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
The reaction of quinol oxidoreductase and membrane-bound c-type cytochromes was studied in chlorosome-depleted membranes isolated from Chlorobium tepidum. Rapid oxidations of c-type cytochromes were detected after flash excitation. Their re-reductions occurred in parallel with the reduction of cytochrome b, especially in the presence of antimycin A, whereas reductions of both cytochromes c and b were suppressed by added stigmatellin. These results indicate the tight coupling between the photosynthetic reaction center and quinol oxidoreductase. Turnovers of two types of cytochromes c were detected. One was assigned to the monoheme-type cytochrome c (designated cytochrome cz), which is known to be tightly bound to the reaction center complex. The other was a new c-type cytochrome, cytochrome c-556, which functions the same as cytochrome c1. The steps of electron-transfer scheme, menaquinol --> Rieske FeS center --> cytochrom c-556 --> cytochrome cz --> P840, are estimated to have reaction times of 20 ms and 560, 150, and 40 microseconds, respectively. We conclude that quinol oxidoreductase and the reaction center complex in Chlorobium tepidum are linked by two distinct membrane-bound cytochromes, cz and c-556, with no involvement of water-soluble cytochromes.
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Affiliation(s)
- H Oh-oka
- Department of Biology, Graduate School of Science, Osaka University, Japan.
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Klarskov K, Verté F, Van Driessche G, Meyer TE, Cusanovich MA, Van Beeumen J. The primary structure of soluble cytochrome c-551 from the phototrophic green sulfur bacterium Chlorobium limicola, strain Tassajara, reveals a novel c-type cytochrome. Biochemistry 1998; 37:10555-62. [PMID: 9692944 DOI: 10.1021/bi9806706] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Chlorobium limicola, strain Tassajara, cytochrome c-551 is a soluble dimeric protein containing identical subunits of about 30 kDa. The amino acid sequence was determined by a combination of automated Edman degradation and mass analysis. There are 258 residues with a single heme binding site located at cysteine positions 172 and 175. In addition, there is a disulfide bridge between Cys78 and Cys109, and a free cysteine at position 219 which was found to occur as cysteic acid. The only homologue of soluble cytochrome c-551 is the soxA protein which is part of the thiosulfate utilization operon of Paracoccus denitrificans. They are 32% identical with three small gaps. This is consistent with the observation that cytochrome c-551 is the electron acceptor for a thiosulfate-oxidizing enzyme. On the basis of the redox potential of 135 mV, the sixth heme ligand should be a methionine. Among the seven methionine residues that are present in c-551, only one is conserved, two residues ahead of the heme-binding site. The far-UV circular dichroism spectrum indicates 40% alpha helix and 25% beta secondary structure. No other known cytochrome c has such a mixed structure; they are either all helical or all beta. Thus, Chlorobium soluble cytochrome c-551 and soxA are likely to be representative of a new class of c-type cytochromes.
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Affiliation(s)
- K Klarskov
- Department of Biochemistry, Physiology and Microbiology, University of Gent, Belgium
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Abstract
Reduced inorganic sulfur compounds are oxidized by members of the domains Archaea and Bacteria. These compounds are used as electron donors for anaerobic phototrophic and aerobic chemotrophic growth, and are mostly oxidized to sulfate. Different enzymes mediate the conversion of various reduced sulfur compounds. Their physiological function in sulfur oxidation is considered (i) mostly from the biochemical characterization of the enzymatic reaction, (ii) rarely from the regulation of their formation, and (iii) only in a few cases from the mutational gene inactivation and characterization of the resulting mutant phenotype. In this review the sulfur-metabolizing reactions of selected phototrophic and of chemotrophic prokaryotes are discussed. These comprise an archaeon, a cyanobacterium, green sulfur bacteria, and selected phototrophic and chemotrophic proteobacteria. The genetic systems are summarized which are presently available for these organisms, and which can be used to study the molecular basis of their dissimilatory sulfur metabolism. Two groups of thiobacteria can be distinguished: those able to grow with tetrathionate and other reduced sulfur compounds, and those unable to do so. This distinction can be made irrespective of their phototrophic or chemotrophic metabolism, neutrophilic or acidophilic nature, and may indicate a mechanism different from that of thiosulfate oxidation. However, the core enzyme for tetrathionate oxidation has not been identified so far. Several phototrophic bacteria utilize hydrogen sulfide, which is considered to be oxidized by flavocytochrome c owing to its in vitro activity. However, the function of flavocytochrome c in vivo may be different, because it is missing in other hydrogen sulfide-oxidizing bacteria, but is present in most thiosulfate-oxidizing bacteria. A possible function of flavocytochrome c is discussed based on biophysical studies, and the identification of a flavocytochrome in the operon encoding enzymes involved in thiosulfate oxidation of Paracoccus denitrificans. Adenosine-5'-phosphosulfate reductase thought to function in the 'reverse' direction in different phototrophic and chemotrophic sulfur-oxidizing bacteria was analysed in Chromatium vinosum. Inactivation of the corresponding gene does not affect the sulfite-oxidizing ability of the mutant. This result questions the concept of its 'reverse' function, generally accepted for over three decades.
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Affiliation(s)
- C G Friedrich
- Lehrstuhl für Technische Mikrobiologie, Fachbereich Chemietechnik, Universität Dortmund, Germany
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Albouy D, Joliot P, Robert B, Nitschke W. Electron transfer towards the RCI-type photosystem in the green sulphur bacterium Chlorobium limicola forma thiosulphatophilum studied by time-resolved optical spectroscopy in vivo. EUROPEAN JOURNAL OF BIOCHEMISTRY 1997; 249:630-6. [PMID: 9370376 DOI: 10.1111/j.1432-1033.1997.t01-2-00630.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Flash-induced spectral changes in the wavelength region of the alpha-peaks of heme proteins and in the time domain from microseconds to seconds have been recorded on whole cells of the green sulphur bacterium Chlorobium limicola forma thiosulfatophilum. Extensive flash-excitation by trains of flashes resulted in oxidation of 7-8 c-type heme molecules/photosynthetic reaction centre. The complement of heme species was found to be spectrally heterogeneous allowing the study of electron transfer events induced by an isolated single-turnover flash. Under single-flash conditions, a c553 heme was seen to become oxidised with tau = 30 micros, concommitant with the reduction of the primary donor of the reaction centre. Subsequently, the alpha-peak of the photooxidised heme broadened and shifted towards longer wavelengths (tau = 70 micros) indicating equilibration of the positive charge over two differing heme species. In the time domain t > 1 ms, rereduction of c-type hemes was seen to be paralleled by a blue shift and further broadening of the alpha-peak. Concommitantly, b-type hemes were observed to first become reduced (within a few milliseconds), then over-oxidised (t > 200 ms) and eventually rereduced to their redox state prior to the flash. The results obtained are discussed with respect to the question of the identity of the immediate electron donor to the photosynthetic reaction centre and with respect to the involvement of a cytochrome bc complex in photo-induced electron transport of green sulphur bacteria.
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Affiliation(s)
- D Albouy
- Institut de Biologie Physico-Chimique, Service de Photosynthèse, Paris, France
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Okumura N, Shimada K, Matsuura K. Photo-oxidation of membrane-bound and soluble cytochromec in the green sulfur bacteriumChlorobium tepidum. PHOTOSYNTHESIS RESEARCH 1994; 41:125-134. [PMID: 24310018 DOI: 10.1007/bf02184152] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/1993] [Accepted: 02/21/1994] [Indexed: 06/02/2023]
Abstract
We studied the photosynthetic electron transfer system of membrane-bound and soluble cytochromec inChlorobium tepidum, a thermophilic green sulfur bacterium, using whole cells and membrane preparations. Sulfide and thiosulfate, physiological electron donors, enhanced flash-induced photo-oxidation ofc-type cytochromes in whole cells. In membranes,c-553 cytochromes with two (or three) heme groups served as immediate electron donors for photo-oxidized bacteriochlorophyll (P840) in the reaction center, and appeared to be closely associated with the reaction center complex. The membrane-bound cytochromec-553 had anE m-value of 180 mV. When isolated soluble cytochromec-553, which has an apparent molecular weight of 10 kDa and seems to correspond to the cytochromec-555 inChlorobium limicola andChlorobium vibrioforme, was added to a membrane suspension, rapid photo-oxidation of both soluble and membrane-bound cytochromesc-553 was observed. The oxidation of soluble cytochromec-553 was inhibited by high salt concentrations. In whole cells, photo-oxidation was observed in the absence of exogenous electron donors and re-reduction was inhibited by stigmatellin, an inhibitor of the cytochromebc complex. These results suggest that the role of membrane-bound and soluble cytochromec inC. tepidum is similar to the role of cytochromec in the photosynthetic electron transfer system of purple bacteria.
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Affiliation(s)
- N Okumura
- Department of Biology, Tokyo Metropolitan University, Minamiohsawa 1-1, Hachioji, 192-03, Tokyo, Japan
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Meyer TE. Purification and properties of cytochrome c-555 from phototrophic green sulfur bacteria. Methods Enzymol 1994; 243:426-35. [PMID: 7830618 DOI: 10.1016/0076-6879(94)43032-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- T E Meyer
- Department of Biochemistry, University of Arizona, Tucson 85721
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Meyer TE, Zhao ZG, Cusanovich MA, Tollin G. Transient kinetics of electron transfer from a variety of c-type cytochromes to plastocyanin. Biochemistry 1993; 32:4552-9. [PMID: 8387337 DOI: 10.1021/bi00068a010] [Citation(s) in RCA: 90] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
Plastocyanin (PC) and its physiological reaction partner cytochrome (cyt) f form a complex which is electrostatically stabilized by interactions between complementary localized charges. We have measured the kinetics of intracomplex electron transfer between several reduced cytochromes and PC using laser flash photolysis. With spinach cyt f and spinach PC, we obtain first-order rate constants, kforward = 2780 s-1 and kreverse = 1050 s-1, for the reversible reaction and a complex dissociation constant of about 23 microM at an ionic strength (I) of 5 mM. The observed rate constant increases by a factor of 2 between I = 5 and 40 mM and then decreases monotonically at higher ionic strengths. This indicates that the complex is not completely dissociated until I = 150 mM and that the proteins within the electrostatically most stable complex are not optimally oriented for electron transfer. Similar results were obtained with turnip cyt f and spinach PC, although in this case intracomplex electron transfer is about 4 times as fast. Horse cyt c also forms an electrostatically stabilized complex with PC, and yields a limiting rate constant for intracomplex electron transfer (1750 s-1) and a dissociation constant (10 microM) comparable to those for spinach cyt f. The ionic strength dependence shows that the complex is more readily dissociated (complete at I = 25 mM) than is that of cyt f and that rearrangement is not required for optimal electron transfer. Addition of polylysine results in 10-fold inhibition of the rate of electron transfer. Pseudomonas cyt c-551 is an acidic cytochrome which does not form a complex with PC.(ABSTRACT TRUNCATED AT 250 WORDS)
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Affiliation(s)
- T E Meyer
- Department of Biochemistry, University of Arizona, Tucson 85721
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Meyer TE, Bartsch RG, Caffrey MS, Cusanovich MA. Redox potentials of flavocytochromes c from the phototrophic bacteria, Chromatium vinosum and Chlorobium thiosulfatophilum. Arch Biochem Biophys 1991; 287:128-34. [PMID: 1654798 DOI: 10.1016/0003-9861(91)90397-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
The redox potentials of flavocytochromes c (FC) from Chromatium vinosum and Chlorobium thiosulfatophilum have been studied as a function of pH. Chlorobium FC has a single heme which has a redox potential of +98 mV at pH 7 (N = 1) that is independent of pH between 6 and 8. The average two-electron redox potential of the flavin extrapolated to pH 7 is +28 mV and decreases 35 mV/pH between pH 6 and 7. The anionic form of the flavin semiquinone is stabilized above pH 6. The redox potential of Chromatium FC is markedly lower than for Chlorobium. The two hemes in Chromatium FC appear to have a redox potential of 15 mV at pH 7 (N = 1), although they reside in very different structural environments. The hemes of Chromatium FC have a pH-dependent redox potential, which can be fit in the simplest case by a single ionization with pK = 7.05. The flavin in Chromatium FC has an average two-electron redox potential of -26 mV at pH 7 and decreases 30 mV/pH between pH 6 and 8. As with Chlorobium, the anionic form of the flavin semiquinone of Chromatium FC is stabilized above pH 6. The unusually high redox potential of the flavin, a stabilized anion radical, and sulfite binding to the flavin in both Chlorobium and Chromatium FCs are characteristics shared by the flavoprotein oxidases. By analogy with glycolate oxidase and lactate dehydrogenase for which there are three-dimensional structures, the properties of the FCs are likely to be due to a positively charged amino acid side chain in the vicinity of the N1 nitrogen of the flavin.
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Affiliation(s)
- T E Meyer
- Department of Biochemistry, University of Arizona, Tucson 85721
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Wallace CJ. Functional consequences of the excision of an omega loop, residues 40-55, from mitochondrial cytochrome c. J Biol Chem 1987. [DOI: 10.1016/s0021-9258(18)45449-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Chapter 9 Substrate oxidation and NAD+ reduction by phototrophic bacteria. ACTA ACUST UNITED AC 1987. [DOI: 10.1016/s0167-7306(08)60140-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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Complex formation between Chlorobium limicola f. thiosulfatophilumc-type cytochromes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1986. [DOI: 10.1016/0005-2728(86)90196-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Blankenship RE. Electron transport in green photosynthetic bacteria. PHOTOSYNTHESIS RESEARCH 1985; 6:317-333. [PMID: 24442952 DOI: 10.1007/bf00054106] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/1984] [Accepted: 11/27/1984] [Indexed: 06/03/2023]
Abstract
Green bacteria make up two of the four families of anoxygenic photosynthetic prokaryotes. The two families have similar pigment compositions and membrane fine structure, and both contain a specialized antenna structure known as a chlorosome. The primary photochemistry and electron transport pathways of the two groups are, however, quite distinct. The anaerobic green bacteria (Chlorobiaceae) contain low-potential iron-sulfur proteins as early electron acceptors and can directly reduce NAD(+) in a manner reminiscent of Photosystem I of oxygenic organisms. The facultatively aerobic green bacteria (Chloroflexaceae) contain quinone-type acceptors and have an overall pattern of electron transport very similar to that found in purple bacteria. Many aspects of energy storage in green bacteria, especially photophosphorylation and the role of cytochrome b/c complexes in electron transport, remain poorly understood.
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Affiliation(s)
- R E Blankenship
- Department of Chemistry, Amherst, Amherst College, 01002, Amherst, MA, USA
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20
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Trudinger PA, Meyer TE, Bartsch RG, Kamen MD. The major soluble cytochromes of the obligately aerobic sulfur bacterium, Thiobacillus neapolitanus. Arch Microbiol 1985; 141:273-8. [PMID: 2990367 DOI: 10.1007/bf00428836] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Four cytochromes were isolated from soluble extracts of the aerobic sulfur bacterium, Thiobacillus neapolitanus. The two most abundant proteins were purified to homogeneity and thoroughly characterized. Cytochrome c-554 (547) is a monomeric, small molecular weight protein which is unusual in having two well-resolved alpha peaks in UV-visible absorption spectra. The redox potential is 208 mV. Native cytochrome c-549 is oligomeric, but has a subunit size of about 26,000. The yield of this protein could be improved dramatically by washing membranes with 30% ammonium sulfate, but the material solubilized by this method had a larger native molecular weight than that in the initial 0.1 M Tris-Cl extract and behaved differently on chromatography. The properties of cytochrome c-549 including subunit size and UV-visible absorption spectra are similar to mitochondrial cytochrome c1 and chloroplast cytochrome f, which suggests that it may be a modified form of the predominant membrane cytochrome. Based on cytochrome content, it is suggested that T. neapolitanus is not closely related to other thiobacilli.
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Cusanovich MA, Meyer TE, Tollin G. Flavocytochromes c: transient kinetics of photoreduction by flavin analogues. Biochemistry 1985; 24:1281-7. [PMID: 2985110 DOI: 10.1021/bi00327a002] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Kinetics of reduction of phototrophic bacterial flavocytochromes c by exogenous flavin semiquinones and fully reduced flavins generated by laser flash photolysis have been studied. The mechanisms of reduction of Chromatium and Chlorobium flavocytochromes c are more similar to one another than previously thought. Neither protein is very reactive with neutral flavin semiquinones (k less than 10(7) M-1 s-1), and the reactions with fully reduced flavins are slower than expected on the basis of comparison with other electron-transfer proteins of similar redox potentials. Deazaflavin radical is reactive with the flavocytochromes c by virtue of its low redox potential, but this reaction is also slower than expected on the basis of comparison with other electron-transfer proteins. These experiments indicate that the active site for reduction of flavocytochrome c is relatively buried and probably inaccessible to solvent. Fully reduced FMN does not show an ionic strength effect in its reaction with flavocytochrome c, which demonstrates that the active site is uncharged. Sulfite, which forms an adduct with protein-bound FAD, partially blocks heme reduction. This shows that heme is reduced via the FAD. The rate constant for intramolecular electron transfer between FAD and heme must be on the order of 10(4) s-1 or larger.
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22
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23
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Lu WP, Kelly DP. Purification and characterization of two essential cytochromes of the thiosulphate-oxidizing multi-enzyme system from Thiobacillus A2 (Thiobacillus versutus). BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1984. [DOI: 10.1016/0005-2728(84)90003-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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24
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1H-NMR assignments for the heme group and electronic structure in Chlorobium thiosulfatophilum cytochrome c-555. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/0167-4838(84)90232-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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25
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Cytochromes and Iron Sulfur Proteins in Sulfur Metabolism of Phototrophic Sulfur Bacteria. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/b978-0-444-42355-9.50024-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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26
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Cytochrome c-555 and iron-sulfur-proteins of the non-thiosulfate-utilizing green sulfur bacterium Chlorobium vibrioforme. Arch Microbiol 1983. [DOI: 10.1007/bf00414477] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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27
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Tollin G, Meyer TE, Cusanovich MA. Intramolecular electron transfer in Chlorobium thiosulfatophilum flavocytochrome c. Biochemistry 1982; 21:3849-56. [PMID: 6291583 DOI: 10.1021/bi00259a020] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The electron-transfer reactions of photoproduced lumiflavin semiquinone and fully reduced lumiflavin with oxidized Chlorobium thiosulfatophilum flavocytochrome c have been studied by using laser flash photolysis. The Chlorobium flavocytochrome c contains one heme and one flavin per Mr 50 000, and thus the possibility exists for intramolecular electron transfer. We find a complex kinetic pattern which is consistent with the transient formation of a spectrally perturbed protein-bound flavin semiquinone which transfers an electron intramolecularly to the heme (k = 1 X 10(3)-1.8 X 10(3) s-1 for the neutral semiquinone, depending upon the pH). Evidence is presented that electron transfer from exogenous lumiflavin to the heme moiety occurs through the protein-bound flavin. We have also performed redox titrations which determine the midpoint potentials of the heme and flavin prosthetic groups at various pH values and the pK values for the semiquinone (6.4) and fully reduced flavin (6.1). Thus, at pH 7, the semiquinone is predominantly in the anionic form at equilibrium. The reactions of Chlorobium flavocytochrome c with photoreduced lumiflavin are similar to those previously found with Chromatium vinosum flavocytochrome c [Cusanovich, M. A., & Tollin, G. (1981) Biochemistry 19, 3343-3347] in that a protein-bound flavin semiquinone is an intermediate in the pathway of reduction. However, the rate constants are substantially different. As a class, the flavocytochromes c appear to operate by analogous mechanisms involving rapid intramolecular transfer between the heme and flavin moieties.
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28
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Steinmetz MA, Fischer U. Cytochromes, rubredoxin, and sulfur metabolism of the non-thiosulfate-utilizing green sulfur bacterium Pelodictyon luteolum. Arch Microbiol 1982. [DOI: 10.1007/bf00508732] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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29
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Cytochromes of the green sulfur bacterium Chlorobium vibrioforme f. thiosulfatophilum. Purification, characterization and sulfur metabolism. Arch Microbiol 1982. [DOI: 10.1007/bf00451493] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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30
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31
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Cytochromes of the non-thiosulfate-utilizing green sulfur bacterium Chlorobium limicola. Arch Microbiol 1981. [DOI: 10.1007/bf00527068] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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32
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Yamanaka T, Fukumori Y, Okunuki K. Preparation of subunits of flavocytochromes c derived from Chlorobium limicola f. thiosulfatophilum and Chromatium vinosum. Anal Biochem 1979; 95:209-13. [PMID: 227287 DOI: 10.1016/0003-2697(79)90207-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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33
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Kihara H, Hon-Nami K, Kitagawa T. Alkaline isomerization of thermoresistant cytochrome c-552 and horse heart cytochrome c studied by absorption and resonance Raman spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA 1978; 532:337-46. [PMID: 23857 DOI: 10.1016/0005-2795(78)90588-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The structure of the thermoresistant cytochrome c (552, Thermus thermophilus) has been investigated at neutral and alkaline pH by absorption and resonance Raman spectroscopy and compared with that of horse heart cytochrome c. The ligands of the ferricytochrome c-552 at neutral pH are considered to be histidine and methionine, whereas the ligands of ferrocytochrome c-552 are histidine and another nitrogen base, histidine or lysine. Ferric cytochrome c-552 undergoes an alkaline isomerization with a pK of 12.3 (25 degrees C), accompanied by a ligand exchange. Horse heart cytochrome c has at least three isomerization states at alkaline pH (pK 9.3, 12.9 and greater than 13.5 at 25 degrees C). The replacement of the sixth ligand may not be involved in the second isomerization. The thermodynamic parameters for the isomerization were also estimated. The entropy change upon isomerization of cytochrome c-552 is negative, whereas for that of horse heart cytochrome c the entropy change is positive.
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34
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Castenholz RW. The effect of sulfide on the blue-green algae of hot springs II. Yellowstone National Park. MICROBIAL ECOLOGY 1977; 3:79-105. [PMID: 24233463 DOI: 10.1007/bf02010399] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
In the Mammoth Springs (Yellowstone National Park) waters with near neutral pH and soluble sulfide (H2S, HS(-), S(2-)) of over 1-2 mg/liter (30-60ΜM) are characterized by substrate covers of phototrophic bacteria (Chloroflexus and aChlorobium-like unicell) above 50‡C and by a blue-green alga (Spirulina labyrinthiformis) below this temperature.Synechococcus. Mastigocladus, and other blue-green algae typical of most hot springs of western North America are excluded, apparently by sulfide. The sulfide-adaptedSpirulina photosynthesized at maximum rates at 45‡C and at approximately 300 to 700ΜEin/m(2)/sec of "visible" radiation. Sulfide (0.6-1.2 mM) severely poisoned photosynthesis of nonadapted populations, but those continuously exposed to over 30ΜM tolerated at least 1 mM without inhibition. A normal(14)C-HCO3 photoincorporation rate was sustained with 0.6-1 mM sulfide in the presence of DCMU (7ΜM) or NH2OH (0.2 mM), although both of these photosystem II inhibitors prevented photoincorporation without sulfide. Other sulfur-containing compounds (S2O3 (2-) SO3 (2-), S2O4 (2-) thioglycolic acid cysteine) were unable to relieve DCMU inhibition. The lowering of the photoincorporation rate by preferentially irradiating photosystem I was also relieved by sulfide. The most tenable explanation of these results is that sulfide is used as a photo-reductant of CO2, at least when photosystem II is inhibited. It is suggested that in some blue-green algae photosystem II is poisoned by a low sulfide concentration, thus making these algae sulfidedependent if they are to continue photosynthesizing in a sulfide environment. Presumably a sulfidecytochrome reductase enzyme system must be synthesized for sulfide to be used as a photo-reductant.
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Affiliation(s)
- R W Castenholz
- Department of Biology, University of Oregon, 97403, Eugene, Oregon
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35
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Olson JM, Giddings TH, Shaw EK. An enriched reaction center preparation from green photosynthetic bacteria. BIOCHIMICA ET BIOPHYSICA ACTA 1976; 449:197-208. [PMID: 990292 DOI: 10.1016/0005-2728(76)90133-x] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Bacteriochlorophyll a reaction-center complex I from Chlorobium limicola f. thiosulfatophilum 6230 (Tassajara) was incubated in 2 M guanidine - HCl and then chromatographed on cross-linked dextran or agarose gel. Two principal components were separated: a larger component with photochemical activity (bacteriochlorophyll a reaction-center complex II) and a smaller component without activity (bacteriochlorophyll a protein). Complex II contains carotenoid, bacteriochlorophyll a, reaction center(s), and cytochromes b and c, but lacks the well characterized bacteriochlorophyll a protein contained in Complex I. Complex II carries out a light-induced reduction of cytochrome b along with an oxidation of cytochrome c.
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36
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Burns DD, Midgley M. Localization and possible role of an adenosine triphosphatase in Chlorobium thiosulfatophilum. EUROPEAN JOURNAL OF BIOCHEMISTRY 1976; 67:323-33. [PMID: 134890 DOI: 10.1111/j.1432-1033.1976.tb10695.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
1. Evidence is presented that the ATPase activity detected in cell extracts of Chlorobium thiosulfatophilum is bound to the cytoplasmic membrane rather than to the chlorobium vesicles. 2. The activity of this ATPase is inhibited in vitro by various carbodiimides, phloridzin and sodium azide. 3. The apparent Km for ATP is approximately 0.2 mM and the enzyme shows product inhibition by ADP. 4. Photophosphorylation, characterized in vivo, is inhibited by many of the compounds that inhibit the ATPase.
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37
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38
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Moore G, Williams R. The substance of this review was given at the Harden Conference, England, 1974. Coord Chem Rev 1976. [DOI: 10.1016/s0010-8545(00)82055-x] [Citation(s) in RCA: 102] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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39
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Knaff DB, Buchanan BB. Cytochrome b and photosynthetic sulfur bacteria. BIOCHIMICA ET BIOPHYSICA ACTA 1975; 376:549-60. [PMID: 1125222 DOI: 10.1016/0005-2728(75)90174-7] [Citation(s) in RCA: 64] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Chromatophores isolated from the purple sulfur bacterium Chromatium and the green sulfur bacterium Chlorobium exhibit absorbance changes in the cytochrome alpha-band region consistent with the presence of a b-type cytochrome. Cytochrome content determined by reduced minus oxidized difference spectra and by heme photochemically active bacteriochlorophyll (reaction-center bacteriochlorophyll). The b-type cytochrome in Chromatium has an alpha-band maximum at 560 nm and a midpoint oxidation-reduction potential of -5 mV at pH 8.0. The b-type cytochrome in Chlorobium has an alpha-band maximum at 564 nm and an apparent midpoint oxidation-reduction potential near -90 mV. Chromatophores isolated from both Chromatium and Chlorobium cells catalyze a photoreduction of cytochrome b that is enhanced in the presence of antimycin A. Antimycin A and 2-n-heptyl-4-hydroxyquinoline-N-oxide inhibit endogenous (but not phenazine methosulfate-mediated) cyclic photophosphorylation in Chromatium chromatophores and non-cyclic electron flow from Na-2S to NADP in Chlorobium chromatophores. These observations suggest that b-type cytochromes may function in electron transport reactions in photosynthetic sulfur bacteria.
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40
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Walker WH, Kenney WC, Edmondson DE, Singer TP, Cronin JR, Hendriks R. The covalently bound flavin of Chromatium cytochrome c552. 1. Evidence for cysteine thiohemiacetal at the 8 alpha position. EUROPEAN JOURNAL OF BIOCHEMISTRY 1974; 48:439-48. [PMID: 4375038 DOI: 10.1111/j.1432-1033.1974.tb03784.x] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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42
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43
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44
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Kusai K, Yamanaka T. The oxidation mechanisms of thiosulphate and sulphide in Chlorobium thiosulphatophilum: roles of cytochrome c-551 and cytochrome c-553. BIOCHIMICA ET BIOPHYSICA ACTA 1973; 325:304-14. [PMID: 4357558 DOI: 10.1016/0005-2728(73)90106-0] [Citation(s) in RCA: 98] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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45
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Knaff DB, Buchanan BB, Malkin R. Effect of oxidation-reduction potential on light-induced cytochrome and bacteriochlorophyll reactions in chromatophores from the photosynthetic green bacterium Chlorobium. BIOCHIMICA ET BIOPHYSICA ACTA 1973; 325:94-101. [PMID: 4770734 DOI: 10.1016/0005-2728(73)90154-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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46
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Kusai A, Yamanaka T. Cytochrome c (553, Chlorobium thiosulfatophilum) is a sulphide-cytochrome c reductase. FEBS Lett 1973; 34:235-7. [PMID: 4355908 DOI: 10.1016/0014-5793(73)80801-4] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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47
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Kusai A, Yamanaka T. An NAD(P) reductase derived from Chlorobium thiosulfatophilum: purification and some properties. BIOCHIMICA ET BIOPHYSICA ACTA 1973; 292:621-33. [PMID: 4145179 DOI: 10.1016/0005-2728(73)90010-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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48
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Kusai A, Yamanaka T. A Novel function of cytochrome C (555, Chlorobium thiosulfatophilum) in oxidation of thiosulfate. Biochem Biophys Res Commun 1973; 51:107-12. [PMID: 4349317 DOI: 10.1016/0006-291x(73)90514-7] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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49
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Davis KA, Hatefi Y, Salemme FR, Kamen MD. Enzymic redox reactions of cytochromes c. Biochem Biophys Res Commun 1972; 49:1329-35. [PMID: 4405125 DOI: 10.1016/0006-291x(72)90612-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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50
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Meyer TE, Bartsch RG, Kamen MD. Cytochrome c 3 . A class of electron transfer heme proteins found in both photosynthetic and sulfate-reducing bacteria. BIOCHIMICA ET BIOPHYSICA ACTA 1971; 245:453-64. [PMID: 5003700 DOI: 10.1016/0005-2728(71)90162-9] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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