The interaction between bicarbonate and the herbicide ioxynil in the thylakoid membrane and the effects of amino acid modification on bicarbonate action

A sixty-year tryst with photosynthesis and related processes: an informal personal perspective

After briefly describing my early collaborative work at the University of Allahabad, that had laid the foundation of my research life, I present here some of our research on photosynthesis at the University of Illinois at Urbana-Champaign, randomly selected from light absorption to NADP⁺ reduction in plants, algae, and cyanobacteria. These include the fact that (i) both the light reactions I and II are powered by light absorbed by chlorophyll (Chl) a of different spectral forms; (ii) light emission (fluorescence, delayed fluorescence, and thermoluminescence) by plants, algae, and cyanobacteria provides detailed information on these reactions and beyond; (iii) primary photochemistry in both the photosystems I (PS I) and II (PS II) occurs within a few picoseconds; and (iv) most importantly, bicarbonate plays a unique role on the electron acceptor side of PS II, specifically at the two-electron gate of PS II. Currently, the ongoing research around the world is, and should be, directed towards making photosynthesis better able to deal with the global issues (such as increasing population, dwindling resources, and rising temperature) particularly through genetic modification. However, basic research is necessary to continue to provide us with an understanding of the molecular mechanism of the process and to guide us in reaching our goals of increasing food production and other chemicals we need for our lives.

Photosystem II and the unique role of bicarbonate: a historical perspective

In photosynthesis, cyanobacteria, algae and plants fix carbon dioxide (CO(2)) into carbohydrates; this is necessary to support life on Earth. Over 50 years ago, Otto Heinrich Warburg discovered a unique stimulatory role of CO(2) in the Hill reaction (i.e., O(2) evolution accompanied by reduction of an artificial electron acceptor), which, obviously, does not include any carbon fixation pathway; Warburg used this discovery to support his idea that O(2) in photosynthesis originates in CO(2). During the 1960s, a large number of researchers attempted to decipher this unique phenomenon, with limited success. In the 1970s, Alan Stemler, in Govindjee's lab, perfected methods to get highly reproducible results, and observed, among other things, that the turnover of Photosystem II (PSII) was stimulated by bicarbonate ions (hydrogen carbonate): the effect would be on the donor or the acceptor, or both sides of PSII. In 1975, Thomas Wydrzynski, also in Govindjee's lab, discovered that there was a definite bicarbonate effect on the electron acceptor (the plastoquinone) side of PSII. The most recent 1.9Å crystal structure of PSII, unequivocally shows HCO(3)(-) bound to the non-heme iron that sits in-between the bound primary quinone electron acceptor, Q(A), and the secondary quinone electron acceptor Q(B). In this review, we focus on the historical development of our understanding of this unique bicarbonate effect on the electron acceptor side of PSII, and its mechanism as obtained by biochemical, biophysical and molecular biological approaches in many laboratories around the World. We suggest an atomic level model in which HCO(3)(-)/CO(3)(2-) plays a key role in the protonation of the reduced Q(B). In addition, we make comments on the role of bicarbonate on the donor side of PSII, as has been extensively studied in the labs of Alan Stemler (USA) and Vyacheslav Klimov (Russia). We end this review by discussing the uniqueness of bicarbonate's role in oxygenic photosynthesis and its role in the evolutionary development of O(2)-evolving PSII. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.

Characterization of the complex interaction between the electron acceptor silicomolybdate and Photosystem II

Silicomolybdate (SiMo) and its effects on thylakoids have been characterized to evaluate its use as a probe for Photosystem II (PS II). It can accept electrons at two places in the electron transport chain: one at PS II and the other at PS I. In the presence of 1 μM 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone (DBMIB) only the site at PS II is available. It is suggested that SiMo must disp;ace bicarbonate from its binding site to be able to function as an electron acceptor. This displacement is non-competitive. The binding of SiMo is inhibited differentially by PS II inhibitors: dinoseb>ioxynil> diuron. This difference is determined by the different positions of the inhibitors within the QB binding niche and their interaction with bicarbonate. The experimental results show that the SiMo-binding niche is located between the parallel helices of the D1 and D2 proteins of PS II, close to the non-heme iron. We conclude that SiMo is an electron acceptor with unique characteristics useful as a probe of the acceptor side of PS II.

Thermoluminescence study of the in vivo effects of bicarbonate depletion and acetate/formate presence in the two algae Chlamydobotrys stellata and Chlamydomonas reinhardtii

We investigated the influence of CO2/HCO3 (-)-depletion and of the presence of acetate and formate on the in vivo photosynthetic electron transport in the two green algae Chlamydobotrys stellata and Chlamydomonas reinhardtii by means of thermoluminescence technique and mathematical glow curve analysis. The main effects of the removal of CO2 from the algal cultures was: (1) A shift of the glow curve peak position to lower temperatures resulting from a decrease of the B band and an increase of the Q band. (2) Treatment of CO2-deficient Chl. stellata with DCMU yielded two thermoluminescence bands in the Q band region peaking at around +12°C and +5°C; in case of Chl. reinhardtii DCMU treatment induced only one band with an emission maximum at +5°C. The presence of acetate or formate in CO2-depleted algal cultures lowered the intensities of all of the individual TL bands but that of a HT band (TL+37). The effects of CO2-depletion and of the presence of anions were fully reversible.

Differential sensitivity of bicarbonate-reversible formate effects on herbicide-resistant mutants of Synechocystis 6714

Herbicide-resistant mutants of the cyanobacterium Synechocystis 6714, that are altered in specific amino acids in their D-1 protein, shows differential sensitivity to formate treatment. Measurements on oxygen yield in a sequence of flashes, chlorophyll (Chl) a fluorescence transients and Chl a fluorescence yield decay after a flash reveal that the resistance of cells to formate treatment is in the following (highest to lowest) order: [double mutant] A251V/F211S (Az V) greater than [single mutant] F211S (Az I) congruent to wild type greater than [single mutant] S264A (DCMU II-A). Significance of these results in terms of overlapping between the herbicide and bicarbonate binding niches on the D-1 protein is discussed.

The molecular mechanism of the bicarbonate effect at the plastoquinone reductase site of photosynthesis

It has been known for some time that bicarbonate reverses the inhibition, by formate under HCO3 (-)-depletion conditions, of electron transport in thylakoid membranes. It has been shown that the major effect is on the electron acceptor side of photosystem II, at the site of plastoquinone reduction. After presenting a historical introduction, and a minireview of the bicarbonate effect, we present a hypothesis on how HCO3 (-) functions in vivo as (a) a proton donor to the plastoquinone reductase site in the D1-D2 protein; and (b) a ligand to Fe(2+) in the QA-Fe-QB complex that keeps the D1-D2 proteins in their proper functional conformation. They key points of the hypothesis are: (1) HCO3 (-) forms a salt bridge between Fe(2+) and the D2 protein. The carboxyl group of HCO3 (-) is a bidentate ligand to Fe(2+), while the hydroxyl group H-bonds to a protein residue. (2) A second HCO3 (-) is involved in protonating a histidine near the QB site to stabilize the negative charge on QB. HCO3 (-) provides a rapidly available source of H(+) for this purpose. (3) After donation of a H(+), CO3 (2-) is replaced by another HCO3 (-). The high pKa of CO3 (2-) ensures rapid reprotonation from the bulk phase. (4) An intramembrane pool of HCO3 (-) is in equilibrium with a large number of low affinity sites. This pool is a H(+) buffering domain functionally connecting the external bulk phase with the quinones. The low affinity sites buffer the intrathylakoid [HCO3 (-)] against fluctuations in the intracellular CO2. (5) Low pH and high ionic strength are suggested to disrupt the HCO3 (-) salt bridge between Fe(2+) and D2. The resulting conformational change exposes the intramembrane HCO3 (-) pool and low affinity sites to the bulk phase.Two contrasting hypotheses for the action of formate are: (a) it functions to remove bicarbonate, and the low electron transport left in such samples is due to the left-over (or endogenous) bicarbonate in the system; or (b) bicarbonate is less of an inhibitor and so appears to relieve the inhibition by formate. Hypothesis (a) implies that HCO3 (-) is an essential requirement for electron transport through the plastoquinones (bound plastoquinones QA and QB and the plastoquinone pool) of photosystem II. Hypothesis (b) implies that HCO3 (-) does not play any significant role in vivo. Our conclusion is that hypothesis (a) is correct and HCO3 (-) is an essential requirement for electron transport on the electron acceptor side of PS II. This is based on several observations: (i) since HCO3 (-), not CO2, is the active species involved (Blubaugh and Govindjee 1986), the calculated concentration of this species (220 μM at pH 8, pH of the stroma) is much higher than the calculated dissociation constant (Kd) of 35-60 μM; thus, the likelihood of bound HCO3 (-) in ambient air is high; (ii) studies on HCO3 (-) effect in thylakoid samples with different chlorophyll concentrations suggest that the "left-over" (or "endogenous") electron flow in bicarbonate-depleted chloroplasts is due to "left-over" (or endogenous) HCO3 (-) remaining bound to the system (Blubaugh 1987).

Phenylglyoxal modification of the Photosystem II reaction center

Time-resolved spectroscopic techniques, including optical flash photolysis and electron spin resonance (ESR), have been used in conjunction with fluorescence-induction and dye-reduction assays to monitor electron transport in Photosystem II (PS II) subchloroplast particles incubated with the covalent modifier, phenylglyoxal. Phenylglyoxal-modified digitonin (D-10) particles from spinach are characterized by a high initial fluorescence yield (Fi) and an abolition of the variable component of fluorescence (Fv); an inhibition of PS-II-mediated reduction of dichlorophenol indophenol (DPIP) by sym-diphenylcarbazide; an abolition of flash-induced absorption transients (t1/2 greater than 2 microseconds) at 820 nm attributed to the primary electron donor, P-680+; the inhibition of photoreduction of the acceptor Qa; and the elimination of the ESR Signal 2s and Signal 2f. These observations suggest the critical participation of specific arginine residues on both the oxidizing and reducing sides of Photosystem II and also implicate phenylglyoxal as a quinone-binding site inhibitor (Golbeck, J.H. and Warden, J.T. (1984) Biochim. Biophys. Acta 767, 263-271).

Tetranitromethane modification of photosystem 2

Inhibition of photosystem 2 by the peptide-modification reagent, tetranitromethane, has been investigated with spinach digitonin particles. In the presence of tetranitromethane, (1) the initial fluoresence yield is suppressed with a concomitant elimination of the variable component of fluorescence; (2) the optical absorption transient at 820 nm, attributed to P680(+), is greatly attenuated; (3) diphenylcarbazide-supported photoreduction of dichlorophenol indophenol is abolished; and (4) electron spin resonance Signal 2f and Signal 2s are eliminated. These results are consistent with multiple sites of modification in photosystem 2 by tetranitromethane, and suggest further that this reagent can inhibit charge stabilization in the reaction center.

Bicarbonate, not CO2, is the species required for the stimulation of Photosystem II electron transport

Evidence is presented that the bicarbonate ion (HCO3-), not CO2, H2CO3 or CO32-, is the species that stimulates electron transport in Photosystem II from spinach (Spinacia oleracea). Advantage was taken of the pH dependence of the ratio of HCO3- to CO2 at equilibrium in order to vary effectively the concentration of one species while holding the other constant. The Hill reaction was stimulated in direct proportion with the equilibrium HCO3- concentration, but it was independent of the equilibrium CO2 concentration. The other two carbonic species, H2CO3 and CO32-, are also shown to have no direct involvement. It is suggested that HCO3- is the species which binds to the effector site.

Electron transfer through photosystem II acceptors: Interaction with anions

We present an overview of anionic interactions with the oxidation-reduction reactions of photosystem II (PSII) acceptors. In section 1, a framework is laid for the electron acceptor side of PSII: the overview begins with a current scheme of the electron transport pathway and of the localization of components in the thylakoid membrane, which is followed by a brief description of the electron acceptor Q or QA and the various heterogeneities associated with it. In section 2, we review briefly the nature of the active species of the bicarbonate (HCO3 (-)) effect, the location of the site of action of HCO3 (-), and its relationship to interactions with other anions. In section 3, we review data on the anion effects on the reoxidation of QA (-) and on the various reactions involved in the two-electron gate mechanism of PSII, and provide a hypothesis as to the action of HCO3 (-) on the protonation reactions. New data obtained by one of us (G) in collaboration with J.J.S. van Rensen, J.F.H Snel and W. Tonk for HCO3 (-)-depleted thylakoids, demonstrating the abolition of the binary oscillations contained within the periodicity of 4 observed for proton release, are also reviewed. In section 4, we comment on the measured binding constant of HCO3 (-) at the anion binding site. And, in section 5, we review our current concept of the mechanism of the HCO3 (-) effect on the electron acceptor side of PSII, and comment on the possible physiological roles for HCO3 (-). Measurements of HCO3 (-) reversible anionic inhibition in intact cells of a green alga Scenedesmus are also reviewed.

Regulation of photosynthetic electron transport by bicarbonate formate and herbicides in isolated broken and intact chloroplasts

In this paper, we have presented a minireview on the interaction of bicarbonate, formate and herbicides with the thylakoid membranes.The regulation of photosynthetic electron transport by bicarbonate, formate and herbicides is described. Bicarbonate, formate, and many herbicides act between the primary quinone electron acceptor QA and the plastoquinone pool. Many herbicides like the ureas, triazines and the phenol-type herbicides act, probably, by the displacement of the secondary quinone electron acceptor QB from its binding site on a QB-binding protein located at the acceptor side of Photosystem II. Formate appears to be an inhibitor of electron transport; this inhibition can be removed by the addition of bicarbonate. There appears to be an interaction of the herbicides with bicarbonate and/or It has been suggested that both the binding of a herbicide and the absence of bicarbonate may cause a conformational alteration of the environment of the QB-binding site. The alteration brought about by a herbicide decreases the affinity for another herbicide or for bicarbonate; the change caused by the absence of bicarbonate decreases the affinity for herbicides. Moreover, this change in conformation causes an inhibition of electron transport. A bicarbonate-effect in isolated intact chloroplasts is demonstrated.