On ammonia futile cycling in a marine unicellular alga

Slow-flow habitats as refugia for coastal calcifiers from ocean acidification

The pH of the oceans' surface water is dropping, termed ocean acidification (OA), and the 0.4 unit reduction in pH by 2100 is projected to negatively impact benthic coastal organisms that produce calcium carbonate "skeletons." Research has focussed on identifying species that are susceptible to OA, but there is an urgent need to discover refuge habitats that will afford protection to vulnerable species. The susceptibility of calcium carbonate skeletons to dissolution by OA depends on the pH at their surface, and this is controlled by the interaction between seawater velocity and organismal metabolism. This perspective considers how seawater velocity modifies the responses of calcifying organisms (seaweed, shellfish, and tropical corals) to OA through its action on controlling diffusion boundary layer thickness and thereby the pH and calcium carbonate saturation state (Ω) at the organisms' surface. Evidence is presented to support the idea that slow-flow habitats, such as wave-sheltered bays or the within canopies of seaweed/seagrass beds, might provide inexpensive refugia from OA for vulnerable coastal calcifiers.

Mitochondrial oxidative phosphorylation is required for ammonium assimilation in light in a marine diatom

Ammonium assimilation in plants occurs via the glutamine synthetase (GS, EC 6.3.1.2)/glutamine 2-oxoglutarate aminotransferase (GOGAT, EC 1.4.1.13 + 1.4.1.14 + 1.4.7.1) pathway. Rates of in vivo ammonium assimilation were measured in the marine diatom Phaeodactylum tricornutum by a recently developed technique that uses the protonophore carbonyl cyanide m-chlorophenylhydrazone to release unassimilated ammonium from the cells. In nitrogen-replete cells of P. tricornutum, there was a poor relationship between uptake and in vivo assimilation of ammonium, with the rate of uptake decreasing and the rate of assimilation increasing with time in the presence of ammonium. Ammonium uptake and assimilation were markedly light dependent, with assimilation inhibited by 77% in darkness. Oligomycin (5 micro g ml-1), an inhibitor of the mitochondrial ATPase, had no effect on the rate of photosynthesis, the maximum endogenous ammonium pool or GS activity in Phaeodactylum, but inhibited respiration by 24-27%. In the light, oligomycin inhibited ammonium assimilation by 55-70% and growth rate by 52%. One possible explanation for these results, namely that mitochondrial ATP is required to sustain activity of the cytosolic isoform of GS, is discussed.