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Nguyen PP, Kado T, Prithviraj M, Siegrist MS, Morita YS. Inositol acylation of phosphatidylinositol mannosides: a rapid mass response to membrane fluidization in mycobacteria. J Lipid Res 2022; 63:100262. [PMID: 35952902 PMCID: PMC9490103 DOI: 10.1016/j.jlr.2022.100262] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 07/25/2022] [Accepted: 07/29/2022] [Indexed: 11/16/2022] Open
Abstract
Mycobacteria share an unusually complex, multilayered cell envelope, which contributes to adaptation to changing environments. The plasma membrane is the deepest layer of the cell envelope and acts as the final permeability barrier against outside molecules. There is an obvious need to maintain the plasma membrane integrity, but the adaptive responses of the plasma membrane to stress exposure remain poorly understood. Using chemical treatment and heat stress to fluidize the membrane, we show here that phosphatidylinositol (PI)-anchored plasma membrane glycolipids known as PI mannosides (PIMs) are rapidly remodeled upon membrane fluidization in Mycobacterium smegmatis. Without membrane stress, PIMs are predominantly in a triacylated form: two acyl chains of the PI moiety plus one acyl chain modified at one of the mannose residues. Upon membrane fluidization, we determined the fourth fatty acid is added to the inositol moiety of PIMs, making them tetra-acylated variants. Additionally, we show that PIM inositol acylation is a rapid response independent of de novo protein synthesis, representing one of the fastest mass conversions of lipid molecules found in nature. Strikingly, we found that M. smegmatis is more resistant to the bactericidal effect of a cationic detergent after benzyl alcohol pre-exposure. We further demonstrate that fluidization-induced PIM inositol acylation is conserved in pathogens such as Mycobacterium tuberculosis and Mycobacterium abscessus. Our results demonstrate that mycobacteria possess a mechanism to sense plasma membrane fluidity change. We suggest that inositol acylation of PIMs is a novel membrane stress response that enables mycobacterial cells to resist membrane fluidization.
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Affiliation(s)
- Peter P Nguyen
- Department of Microbiology, University of Massachusetts, Amherst, MA, USA
| | - Takehiro Kado
- Department of Microbiology, University of Massachusetts, Amherst, MA, USA
| | | | - M Sloan Siegrist
- Department of Microbiology, University of Massachusetts, Amherst, MA, USA; Molecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst, MA, USA
| | - Yasu S Morita
- Department of Microbiology, University of Massachusetts, Amherst, MA, USA; Molecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst, MA, USA.
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2
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Paix B, Potin P, Schires G, Le Poupon C, Misson B, Leblanc C, Culioli G, Briand JF. Synergistic effects of temperature and light affect the relationship between Taonia atomaria and its epibacterial community: a controlled conditions study. Environ Microbiol 2021; 23:6777-6797. [PMID: 34490980 DOI: 10.1111/1462-2920.15758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Revised: 09/03/2021] [Accepted: 09/03/2021] [Indexed: 11/29/2022]
Abstract
In the context of global warming, this study aimed to assess the effect of temperature and irradiance on the macroalgal Taonia atomaria holobiont dynamics. We developed an experimental set-up using aquaria supplied by natural seawater with three temperatures combined with three irradiances. The holobiont response was monitored over 14 days using a multi-omics approach coupling algal surface metabolomics and metabarcoding. Both temperature and irradiance appeared to shape the microbiota and the surface metabolome, but with a distinct temporality. Epibacterial community first changed according to temperature, and later in relation to irradiance, while the opposite occurred for the surface metabolome. An increased temperature revealed a decreasing richness of the epiphytic community together with an increase of several bacterial taxa. Irradiance changes appeared to quickly impact surface metabolites production linked with the algal host photosynthesis (e.g. mannitol, fucoxanthin, dimethylsulfoniopropionate), which was hypothesized to explain modifications of the structure of the epiphytic community. Algal host may also directly adapt its surface metabolome to changing temperature with time (e.g. lipids content) and also in response to changing microbiota (e.g. chemical defences). Finally, this study brought new insights highlighting complex direct and indirect responses of seaweeds and their associated microbiota under changing environments.
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Affiliation(s)
- Benoit Paix
- Université de Toulon, Laboratoire MAPIEM, La Garde, EA 4323, France
| | - Philippe Potin
- Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), UMR 8227, Station Biologique de Roscoff (SBR), Roscoff, France
| | - Gaëtan Schires
- Sorbonne Université, CNRS, Center for Biological Marine Resources (CRBM), FR 2424, Station Biologique de Roscoff (SBR), Roscoff, France
| | - Christophe Le Poupon
- Université de Toulon, Aix Marseille Université, CNRS, IRD, Mediterranean Institute of Oceanography (MIO), UM110, La Garde, France
| | - Benjamin Misson
- Université de Toulon, Aix Marseille Université, CNRS, IRD, Mediterranean Institute of Oceanography (MIO), UM110, La Garde, France
| | - Catherine Leblanc
- Sorbonne Université, CNRS, Integrative Biology of Marine Models (LBI2M), UMR 8227, Station Biologique de Roscoff (SBR), Roscoff, France
| | - Gérald Culioli
- Université de Toulon, Laboratoire MAPIEM, La Garde, EA 4323, France
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Schmid M, Fernández PA, Gaitán-Espitia JD, Virtue P, Leal PP, Revill AT, Nichols PD, Hurd CL. Stress due to low nitrate availability reduces the biochemical acclimation potential of the giant kelp Macrocystis pyrifera to high temperature. ALGAL RES 2020. [DOI: 10.1016/j.algal.2020.101895] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Cell membrane fatty acid and pigment composition of the psychrotolerant cyanobacterium Nodularia spumigena CHS1 isolated from Hopar glacier, Pakistan. Extremophiles 2019; 24:135-145. [PMID: 31655895 DOI: 10.1007/s00792-019-01141-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2019] [Accepted: 10/10/2019] [Indexed: 10/25/2022]
Abstract
In the present study, cyanobacterium isolate CHS1 isolated from Hopar glacier, Pakistan, was analyzed for the first time for cell membrane fatty acids and production of pigments. Sequencing of the 16-23S intergenetic region confirmed identification of the isolate CHS1 as Nodularia spumigena. All chlorophyll and carotenoid pigments were quantified using high-performance liquid chromatography and experiments to test tolerance against a range of physico-chemical conditions were conducted. Likewise, the fatty acid profile of the cell membrane CHS1 was analyzed using gas chromatography and mass spectroscopy. The cyanobacterium isolate CHS1 demonstrated tolerance to 8 g/L% NaCl, 35°C and pH 5-9. The characteristic polyunsaturated fatty acid (PUFA) of isolate CHS1, C18:4, was observed in fatty acid methyl esters (FAMEs) extracted from the cell membrane. CHS1 was capable of producing saturated fatty acids (SFA) (e.g., C16:0), monounsaturated fatty acids (MUFA) (e.g., C18:1) and polyunsaturated fatty acids (e.g., C20:5) in the cell membrane. In this study, we hypothesize that one mechanism of cold adaptation displayed by isolate CHS1 is the accumulation of high amounts of PUFA in the cell membrane.
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Temperature effects on growth rates and fatty acid content in freshwater algae and cyanobacteria. ALGAL RES 2018. [DOI: 10.1016/j.algal.2018.09.018] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Hingston P, Chen J, Allen K, Truelstrup Hansen L, Wang S. Strand specific RNA-sequencing and membrane lipid profiling reveals growth phase-dependent cold stress response mechanisms in Listeria monocytogenes. PLoS One 2017; 12:e0180123. [PMID: 28662112 PMCID: PMC5491136 DOI: 10.1371/journal.pone.0180123] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2017] [Accepted: 06/11/2017] [Indexed: 11/19/2022] Open
Abstract
The human pathogen Listeria monocytogenes continues to pose a challenge in the food industry, where it is known to contaminate ready-to-eat foods and grow during refrigerated storage. Increased knowledge of the cold-stress response of this pathogen will enhance the ability to control it in the food-supply-chain. This study utilized strand-specific RNA sequencing and whole cell fatty acid (FA) profiling to characterize the bacterium's cold stress response. RNA and FAs were extracted from a cold-tolerant strain at five time points between early lag phase and late stationary-phase, both at 4°C and 20°C. Overall, more genes (1.3×) were suppressed than induced at 4°C. Late stationary-phase cells exhibited the greatest number (n = 1,431) and magnitude (>1,000-fold) of differentially expressed genes (>2-fold, p<0.05) in response to cold. A core set of 22 genes was upregulated at all growth phases, including nine genes required for branched-chain fatty acid (BCFA) synthesis, the osmolyte transporter genes opuCBCD, and the internalin A and D genes. Genes suppressed at 4°C were largely associated with cobalamin (B12) biosynthesis or the production/export of cell wall components. Antisense transcription accounted for up to 1.6% of total mapped reads with higher levels (2.5×) observed at 4°C than 20°C. The greatest number of upregulated antisense transcripts at 4°C occurred in early lag phase, however, at both temperatures, antisense expression levels were highest in late stationary-phase cells. Cold-induced FA membrane changes included a 15% increase in the proportion of BCFAs and a 15% transient increase in unsaturated FAs between lag and exponential phase. These increases probably reduced the membrane phase transition temperature until optimal levels of BCFAs could be produced. Collectively, this research provides new information regarding cold-induced membrane composition changes in L. monocytogenes, the growth-phase dependency of its cold-stress regulon, and the active roles of antisense transcripts in regulating its cold stress response.
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Affiliation(s)
- Patricia Hingston
- Department of Food, Nutrition, and Health, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Jessica Chen
- Department of Food, Nutrition, and Health, The University of British Columbia, Vancouver, British Columbia, Canada
| | - Kevin Allen
- Department of Food, Nutrition, and Health, The University of British Columbia, Vancouver, British Columbia, Canada
| | | | - Siyun Wang
- Department of Food, Nutrition, and Health, The University of British Columbia, Vancouver, British Columbia, Canada
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Specht EA, Karunanithi PS, Gimpel JA, Ansari WS, Mayfield SP. Host Organisms: Algae. Ind Biotechnol (New Rochelle N Y) 2016. [DOI: 10.1002/9783527807796.ch16] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Affiliation(s)
- Elizabeth A. Specht
- University of California; California Center for Algae Biotechnology; Division of Biological Sciences; 9500 Gilman Drive San Diego, La Jolla CA 92093 USA
| | - Prema S. Karunanithi
- University of California; California Center for Algae Biotechnology; Division of Biological Sciences; 9500 Gilman Drive San Diego, La Jolla CA 92093 USA
| | - Javier A. Gimpel
- Centre for Biotechnology and Bioengineering; Department of Chemical Engineering and Biotechnology, Universidad de Chile; 851 Beaucheff Santiago USA
| | - William S. Ansari
- University of California; California Center for Algae Biotechnology; Division of Biological Sciences; 9500 Gilman Drive San Diego, La Jolla CA 92093 USA
| | - Stephen P. Mayfield
- University of California; California Center for Algae Biotechnology; Division of Biological Sciences; 9500 Gilman Drive San Diego, La Jolla CA 92093 USA
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Abstract
Plant and algal oils are some of the most energy-dense renewable compounds provided by nature. Triacylglycerols (TAGs) are the major constituent of plant oils, which can be converted into fatty acid methyl esters commonly known as biodiesel. As one of the most efficient producers of TAGs, photosynthetic microalgae have attracted substantial interest for renewable fuel production. Currently, the big challenge of microalgae based TAGs for biofuels is their high cost compared to fossil fuels. A conundrum is that microalgae accumulate large amounts of TAGs only during stress conditions such as nutrient deprivation and temperature stress, which inevitably will inhibit growth. Thus, a better understanding of why and how microalgae induce TAG biosynthesis under stress conditions would allow the development of engineered microalgae with increased TAG production during conditions optimal for growth. Land plants also synthesize TAGs during stresses and we will compare new findings on environmental stress-induced TAG accumulation in plants and microalgae especially in the well-characterized model alga Chlamydomonas reinhardtii and a biotechnologically relevant genus Nannochloropsis.
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Affiliation(s)
- Zhi-Yan Du
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA
| | - Christoph Benning
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA.
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Bywaters KF, Fritsen CH. Biomass and neutral lipid production in geothermal microalgal consortia. Front Bioeng Biotechnol 2015; 2:82. [PMID: 25763368 PMCID: PMC4329875 DOI: 10.3389/fbioe.2014.00082] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2014] [Accepted: 12/13/2014] [Indexed: 11/13/2022] Open
Abstract
Recently, technologies have been developed that offer the possibility of using algal biomass as feedstocks to energy producing systems - in addition to oil-derived fuels (Bird et al., 2011, 2012). Growing native mixed microalgal consortia for biomass in association with geothermal resources has the potential to mitigate negative impacts of seasonally low temperatures on biomass production systems as well as mitigate some of the challenges associated with growing unialgal strains. We assessed community composition, growth rates, biomass, and neutral lipid production of microalgal consortia obtained from geothermal hot springs in the Great Basin/Nevada area that were cultured under different thermal and light conditions. Biomass production rates ranged from 39.0 to 344.1 mg C L(-1) day(-1). The neutral lipid production in these consortia with and without shifts to lower temperatures and additions of bicarbonate (both environmental parameters that have been shown to enhance neutral lipid production) ranged from 0 to 38.74 mg free fatty acids (FFA) and triacylglycerols (TAG) L(-1 )day(-1); the upper value was approximately 6% of the biomass produced. The higher lipid values were most likely due to the presence of Achnanthidium sp. Palmitic and stearic acids were the dominant free fatty acids. The S/U ratio (the saturated to unsaturated FA ratio) decreased for cultures shifted from their original temperature to 15°C. Biomass production was within the upper limits of those reported for individual strains, and production of neutral lipids was increased with secondary treatment. All results demonstrate a potential of culturing and manipulating resultant microalgal consortia for biomass-based energy production and perhaps even for biofuels.
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Affiliation(s)
- Kathryn F Bywaters
- Division of Earth and Ecosystem Sciences, Desert Research Institute , Reno, NV , USA ; Graduate Program of Environmental Science, University of Nevada Reno , Reno, NV , USA
| | - Christian H Fritsen
- Division of Earth and Ecosystem Sciences, Desert Research Institute , Reno, NV , USA
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Fondi M, Maida I, Perrin E, Mellera A, Mocali S, Parrilli E, Tutino ML, Liò P, Fani R. Genome-scale metabolic reconstruction and constraint-based modelling of the Antarctic bacteriumPseudoalteromonas haloplanktis TAC125. Environ Microbiol 2014; 17:751-66. [DOI: 10.1111/1462-2920.12513] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2014] [Accepted: 05/13/2014] [Indexed: 12/30/2022]
Affiliation(s)
- Marco Fondi
- Laboratory of Microbial and Molecular Evolution; Department of Biology; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
- ComBo; Florence Computational Biology Group; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
| | - Isabel Maida
- Laboratory of Microbial and Molecular Evolution; Department of Biology; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
| | - Elena Perrin
- Laboratory of Microbial and Molecular Evolution; Department of Biology; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
| | - Alessandra Mellera
- Laboratory of Microbial and Molecular Evolution; Department of Biology; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
- ComBo; Florence Computational Biology Group; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
| | - Stefano Mocali
- Consiglio per la Ricerca e la Sperimentazione in Agricoltura; Centro di Ricerca per l'Agrobiologia e la Pedologia (CRA-ABP); Firenze Italy
| | | | - Maria Luisa Tutino
- Department of Chemical Sciences; University of Naples Federico II; Naples Italy
| | - Pietro Liò
- Computer Laboratory; Cambridge University; Cambridge UK
| | - Renato Fani
- Laboratory of Microbial and Molecular Evolution; Department of Biology; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
- ComBo; Florence Computational Biology Group; University of Florence; Via Madonna del Piano 6, Sesto Fiorentino Florence 50019 Italy
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Chen G, Qu S, Wang Q, Bian F, Peng Z, Zhang Y, Ge H, Yu J, Xuan N, Bi Y, He Q. Transgenic expression of delta-6 and delta-15 fatty acid desaturases enhances omega-3 polyunsaturated fatty acid accumulation in Synechocystis sp. PCC6803. BIOTECHNOLOGY FOR BIOFUELS 2014; 7:32. [PMID: 24581179 PMCID: PMC3941260 DOI: 10.1186/1754-6834-7-32] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2013] [Accepted: 02/12/2014] [Indexed: 05/09/2023]
Abstract
BACKGROUND Polyunsaturated fatty acids (PUFAs), which contain two or more double bonds in their backbone, are the focus of intensive global research, because of their nutritional value, medicinal applications, and potential use as biofuel. However, the ability to produce these economically important compounds is limited, because it is both expensive and technically challenging to separate omega-3 polyunsaturated fatty acids (ω-3 PUFAs) from natural oils. Although the biosynthetic pathways of some plant and microalgal ω-3 PUFAs have been deciphered, current understanding of the correlation between fatty acid desaturase content and fatty acid synthesis in Synechocystis sp. PCC6803 is incomplete. RESULTS We constructed a series of homologous vectors for the endogenous and exogenous expression of Δ6 and Δ15 fatty acid desaturases under the control of the photosynthesis psbA2 promoter in transgenic Synechocystis sp. PCC6803. We generated six homologous recombinants, harboring various fatty acid desaturase genes from Synechocystis sp. PCC6803, Gibberella fujikuroi and Mortierella alpina. These lines produced up to 8.9 mg/l of α-linolenic acid (ALA) and 4.1 mg/l of stearidonic acid (SDA), which are more than six times the corresponding wild-type levels, at 20°C and 30°C. Thus, transgenic expression of Δ6 and Δ15 fatty acid desaturases enhances the accumulation of specific ω-3 PUFAs in Synechocystis sp. PCC6803. CONCLUSIONS In the blue-green alga Synechocystis sp. PCC6803, overexpression of endogenous and exogenous genes encoding PUFA desaturases markedly increased accumulation of ALA and SDA and decreased accumulation of linoleic acid and γ-linolenic acid. This study lays the foundation for increasing the fatty acid content of cyanobacteria and, ultimately, for producing nutritional and medicinal products with high levels of essential ω-3 PUFAs.
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Affiliation(s)
- Gao Chen
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Shujie Qu
- Test Base Service Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
| | - Qiang Wang
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, P. R. China
| | - Fei Bian
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Zhenying Peng
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Yan Zhang
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Haitao Ge
- School of Life Science, Shandong University, Jinan 250100, P. R. China
| | - Jinhui Yu
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Ning Xuan
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Yuping Bi
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
| | - Qingfang He
- Biotechnology Research Center, Shandong Academy of Agricultural Sciences, Jinan 250100, P. R. China
- Shandong Provincial Key Laboratory of Genetic Improvement, Ecology and Physiology of Crops, Jinan 250100, P. R. China
- Department of Applied Science, University of Arkansas, Little Rock, Arkansas 72204, USA
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Abstract
Temperature is one of the key parameters that controlled the origin and evolution of life on earth and it continues to be a principal regulator of the functions of organisms. Some aspects of the response of simple and complex organisms to temperature variations are encoded in the physical properties of the cell components, with the all-important plasma membrane playing a principal role. Other responses to temperature are more specific and through evolution, specialized receptors with particular temperature sensitivities have appeared to mediate this signaling. While some of these receptors are ancient and can be found in very primitive organisms, it seems that the mechanisms used by prokaryotes and eukaryotes are very different, indicating that temperature sensitivity has evolved in more than one occasion during evolution.
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Affiliation(s)
- León D Islas
- Department of Physiology, School of Medicine, National Autonomous University of Mexico (UNAM), Mexico City, Mexico.
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13
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Thiel T, Pratte BS, Zhong J, Goodwin L, Copeland A, Lucas S, Han C, Pitluck S, Land ML, Kyrpides NC, Woyke T. Complete genome sequence of Anabaena variabilis ATCC 29413. Stand Genomic Sci 2014; 9:562-73. [PMID: 25197444 PMCID: PMC4148955 DOI: 10.4056/sigs.3899418] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Anabaena variabilis ATCC 29413 is a filamentous, heterocyst-forming cyanobacterium that has served as a model organism, with an extensive literature extending over 40 years. The strain has three distinct nitrogenases that function under different environmental conditions and is capable of photoautotrophic growth in the light and true heterotrophic growth in the dark using fructose as both carbon and energy source. While this strain was first isolated in 1964 in Mississippi and named Anabaena flos-aquae MSU A-37, it clusters phylogenetically with cyanobacteria of the genus Nostoc. The strain is a moderate thermophile, growing well at approximately 40(°) C. Here we provide some additional characteristics of the strain, and an analysis of the complete genome sequence.
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Affiliation(s)
- Teresa Thiel
- Department of Biology, University of Missouri-St. Louis, St. Louis, MO
| | - Brenda S Pratte
- Department of Biology, University of Missouri-St. Louis, St. Louis, MO
| | - Jinshun Zhong
- Department of Biology, University of Missouri-St. Louis, St. Louis, MO
| | | | - Alex Copeland
- DOE Joint Genome Institute, Walnut Creek, CA ; Lawrence Berkeley National Laboratory, Berkeley, CA
| | - Susan Lucas
- Lawrence Livermore National Laboratory, Livermore, CA
| | - Cliff Han
- Los Alamos National Laboratory, Los Alamos, NM
| | - Sam Pitluck
- DOE Joint Genome Institute, Walnut Creek, CA ; Lawrence Berkeley National Laboratory, Berkeley, CA
| | | | - Nikos C Kyrpides
- DOE Joint Genome Institute, Walnut Creek, CA ; Lawrence Berkeley National Laboratory, Berkeley, CA
| | - Tanja Woyke
- DOE Joint Genome Institute, Walnut Creek, CA ; Lawrence Berkeley National Laboratory, Berkeley, CA
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14
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Kirrolia A, Bishnoi NR, Singh R. Response surface methodology as a decision-making tool for optimization of culture conditions of green microalgae Chlorella spp. for biodiesel production. ANN MICROBIOL 2013. [DOI: 10.1007/s13213-013-0752-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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16
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Larsson K, Quinn P, Sato K, Tiberg F. Lipids of biological membranes. Lipids 2012. [DOI: 10.1533/9780857097910.183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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17
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Mukherjee D, Vaughn M, Khomami B, Bruce BD. Modulation of cyanobacterial photosystem I deposition properties on alkanethiolate Au substrate by various experimental conditions. Colloids Surf B Biointerfaces 2011; 88:181-90. [DOI: 10.1016/j.colsurfb.2011.06.029] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2011] [Revised: 06/22/2011] [Accepted: 06/22/2011] [Indexed: 10/18/2022]
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Perez-Garcia O, Escalante FME, de-Bashan LE, Bashan Y. Heterotrophic cultures of microalgae: metabolism and potential products. WATER RESEARCH 2011; 45:11-36. [PMID: 20970155 DOI: 10.1016/j.watres.2010.08.037] [Citation(s) in RCA: 700] [Impact Index Per Article: 53.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2010] [Revised: 08/09/2010] [Accepted: 08/20/2010] [Indexed: 05/05/2023]
Abstract
This review analyzes the current state of a specific niche of microalgae cultivation; heterotrophic growth in the dark supported by a carbon source replacing the traditional support of light energy. This unique ability of essentially photosynthetic microorganisms is shared by several species of microalgae. Where possible, heterotrophic growth overcomes major limitations of producing useful products from microalgae: dependency on light which significantly complicates the process, increase costs, and reduced production of potentially useful products. As a general role, and in most cases, heterotrophic cultivation is far cheaper, simpler to construct facilities, and easier than autotrophic cultivation to maintain on a large scale. This capacity allows expansion of useful applications from diverse species that is now very limited as a result of elevated costs of autotrophy; consequently, exploitation of microalgae is restricted to small volume of high-value products. Heterotrophic cultivation may allow large volume applications such as wastewater treatment combined, or separated, with production of biofuels. In this review, we present a general perspective of the field, describing the specific cellular metabolisms involved and the best-known examples from the literature and analyze the prospect of potential products from heterotrophic cultures.
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Affiliation(s)
- Octavio Perez-Garcia
- Environmental Microbiology Group, Northwestern Center for Biological Research, Mar Bermejo 195, Col Playa Palo de Santa Rita, La Paz, BCS 23090, Mexico
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How do bacteria sense and respond to low temperature? Arch Microbiol 2010; 192:85-95. [DOI: 10.1007/s00203-009-0539-y] [Citation(s) in RCA: 132] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2009] [Revised: 11/19/2009] [Accepted: 12/21/2009] [Indexed: 11/30/2022]
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Powell N, Shilton AN, Pratt S, Chisti Y. Factors influencing luxury uptake of phosphorus by microalgae in waste stabilization ponds. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2008; 42:5958-62. [PMID: 18767651 DOI: 10.1021/es703118s] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Phosphorus removal in waste stabilization ponds (WSP) is highly variable, but the reasons for this are not well understood. Luxury uptake of phosphorus by microalgae has been studied in natural systems such as lakes but not under the conditions found in WSP. This work reports on the effects of phosphate concentration, light intensity, and temperature on luxury uptake of phosphorus by WSP microalgae in continuous culture bioreactors. Increasing temperature had a statistically significant "positive effect" on intracellular acid-insoluble polyphosphate concentration. It is likely that elevated temperature increased the rate of polyphosphate accumulation, but because the biomass was not starved of phosphate, the stored acid-insoluble polyphosphate was not utilized. Increasing light intensity had no effect on acid-insoluble polyphosphate but had a "negative effect" on the acid-soluble polyphosphate. A possible explanation for this is that the faster growth rate at high light intensity results in this form of polyphosphate being utilized by the cells for synthesis of cellular constituents at a rate that exceeds replenishment. The variability in the phosphorus content of the microalgal biomass shows that with this new understanding ofthe luxury uptake mechanism there is the potential to optimize WSP for biological phosphorus removal.
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Affiliation(s)
- Nicola Powell
- Centre for Environmental Technology and Engineering, Massey University, Private Bag 11-222, Palmerston North, New Zealand.
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Hu Q, Sommerfeld M, Jarvis E, Ghirardi M, Posewitz M, Seibert M, Darzins A. Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2008; 54:621-39. [PMID: 18476868 DOI: 10.1111/j.1365-313x.2008.03492.x] [Citation(s) in RCA: 1721] [Impact Index Per Article: 107.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Microalgae represent an exceptionally diverse but highly specialized group of micro-organisms adapted to various ecological habitats. Many microalgae have the ability to produce substantial amounts (e.g. 20-50% dry cell weight) of triacylglycerols (TAG) as a storage lipid under photo-oxidative stress or other adverse environmental conditions. Fatty acids, the building blocks for TAGs and all other cellular lipids, are synthesized in the chloroplast using a single set of enzymes, of which acetyl CoA carboxylase (ACCase) is key in regulating fatty acid synthesis rates. However, the expression of genes involved in fatty acid synthesis is poorly understood in microalgae. Synthesis and sequestration of TAG into cytosolic lipid bodies appear to be a protective mechanism by which algal cells cope with stress conditions, but little is known about regulation of TAG formation at the molecular and cellular level. While the concept of using microalgae as an alternative and renewable source of lipid-rich biomass feedstock for biofuels has been explored over the past few decades, a scalable, commercially viable system has yet to emerge. Today, the production of algal oil is primarily confined to high-value specialty oils with nutritional value, rather than commodity oils for biofuel. This review provides a brief summary of the current knowledge on oleaginous algae and their fatty acid and TAG biosynthesis, algal model systems and genomic approaches to a better understanding of TAG production, and a historical perspective and path forward for microalgae-based biofuel research and commercialization.
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Affiliation(s)
- Qiang Hu
- Department of Applied Biological Sciences, Arizona State University Polytechnic Campus, Mesa, AZ 85212, USA
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Chintalapati S, Prakash JSS, Singh AK, Ohtani S, Suzuki I, Murata N, Shivaji S. Desaturase genes in a psychrotolerant Nostoc sp. are constitutively expressed at low temperature. Biochem Biophys Res Commun 2007; 362:81-87. [PMID: 17697671 DOI: 10.1016/j.bbrc.2007.07.150] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2007] [Accepted: 07/26/2007] [Indexed: 11/29/2022]
Abstract
Antarctic psychrotolerant, Nostoc sp. (SO-36), when grown at 25 degrees C and then shifted to 10 degrees C, showed an increase in the tri-unsaturated fatty acid [C(18:3(9,12,15))] at the expense of mono- [C(18:1(9))] and di-unsaturated [C(18:2(9,12))] fatty acids. These results indicate that the activities of the enzymes DesA and DesB are up-regulated, when cultures were grown at 10 degrees C or shifted to 10 degrees C from 25 degrees C. However, RT-PCR studies indicated a constitutive expression of desA, desB, desC, and desC2 genes when cultures grown at 25 degrees C were shifted to 10 degrees C. This constitutive expression of des genes is in contrast to that observed in mesophilic cyanobacteria, in which desA and desB are transcriptionally up-regulated in response to lowering of growth temperature.
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Affiliation(s)
- Suresh Chintalapati
- Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India
| | - J S S Prakash
- Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India
| | - Ashish K Singh
- Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India
| | - Shuji Ohtani
- Department of Biology, Faculty of Education, Shimane University, Nishikawatsu, Matsue 690, Japan
| | - Iwane Suzuki
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan
| | - Norio Murata
- National Institute for Basic Biology, Myodaiji, Okazaki 444-8585, Japan
| | - Sisinthy Shivaji
- Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India.
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Sato N, Moriyama T. Genomic and biochemical analysis of lipid biosynthesis in the unicellular rhodophyte Cyanidioschyzon merolae: lack of a plastidic desaturation pathway results in the coupled pathway of galactolipid synthesis. EUKARYOTIC CELL 2007; 6:1006-17. [PMID: 17416897 PMCID: PMC1951526 DOI: 10.1128/ec.00393-06] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2006] [Accepted: 03/20/2007] [Indexed: 11/20/2022]
Abstract
The acyl lipids making up the plastid membranes in plants and algae are highly enriched in polyunsaturated fatty acids and are synthesized by two distinct pathways, known as the prokaryotic and eukaryotic pathways, which are located within the plastids and the endoplasmic reticulum, respectively. Here we report the results of biochemical as well as genomic analyses of lipids and fatty acids in the unicellular rhodophyte Cyanidioschyzon merolae. All of the glycerolipids usually found in photosynthetic algae were found, such as mono- and digalactosyl diacylglycerol, sulfolipid, phosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, and phosphatidylinositol. However, the fatty acid composition was extremely simple. Only palmitic, stearic, oleic, and linoleic acids were found as major acids. In addition, 3-trans-hexadecanoic acid was found as a very minor component in phosphatidylglycerol. Unlike the case for most other photosynthetic eukaryotes, polyenoic fatty acids having three or more double bonds were not detected. These results suggest that polyunsaturated fatty acids are not necessary for photosynthesis in eukaryotes. Genomic analysis suggested that C. merolae lacks acyl lipid desaturases of cyanobacterial origin as well as stearoyl acyl carrier protein desaturase, both of which are major desaturases in plants and green algae. The results of labeling experiments with radioactive acetate showed that the desaturation leading to linoleic acid synthesis occurs on phosphatidylcholine located outside the plastids. Monogalactosyl diacylglycerol is therefore synthesized by the coupled pathway, using plastid-derived palmitic acid and endoplasmic reticulum-derived linoleic acid. These results highlight essential differences in lipid biosynthetic pathways between the red algae and the green lineage, which includes plants and green algae.
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Affiliation(s)
- Naoki Sato
- Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.
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Rajendran UM, Kathirvel E, Anand N. Desiccation-induced Changes in Antioxidant Enzymes, Fatty Acids, and Amino Acids in the Cyanobacterium Tolypothrix scytonemoides. World J Microbiol Biotechnol 2006. [DOI: 10.1007/s11274-006-9221-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Mikami K, Murata N. Membrane fluidity and the perception of environmental signals in cyanobacteria and plants. Prog Lipid Res 2004; 42:527-43. [PMID: 14559070 DOI: 10.1016/s0163-7827(03)00036-5] [Citation(s) in RCA: 132] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photosynthetic organisms, namely, plants and cyanobacteria, are directly exposed to changes in their environment and their survival depends on their ability to acclimate to such changes. Several lines of evidence suggest that temperature stress, such as unusually low or high temperatures, and osmotic stress might be perceived by plants and cyanobacteria via changes in the fluidity of their cell membranes. The availability of techniques for gene-targeted mutagenesis and gene transfer, as well as for the analysis of genomes and transcripts, has allowed us to examine and evaluate this hypothesis and its implications. In this review, we summarize recent studies of the regulation of gene expression by changes in the extent of unsaturation of fatty acids and membrane fluidity, and we present a discussion of the induction of gene expression by environmental stress and of sensors of environmental conditions and relationships between their activity and the fluidity of membranes in cyanobacteria and plants.
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Affiliation(s)
- Koji Mikami
- Department of Regulation Biology, National Institute for Basic Biology, 444-8585, Okazaki, Japan
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Abstract
The lipid matrix of biological membranes is composed of a complex mixture of polar lipids. It has been estimated that more than 600 distinct molecular species of lipid are constituents of biological membranes. This rather remarkable feature raises the questions of why such complexity is required when barrier properties and many protein functions can be reconstituted with relatively simple lipid systems. Secondly, the molecular species composition of morphologically distinct membranes appears to be preserved within fairly narrow limits. The biochemical mechanism(s) responsible for this homeostasis are not fully understood. This review examines the origin of membrane lipid complexity, the methods that are currently employed to measure and detect lipid molecular species and the biochemical reactions associated with the turnover of membrane lipids in resting and stimulated cells.
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Affiliation(s)
- Claude Wolf
- Biochemistry Department, Mass Spectrometry Laboratory, INSERM U 538, Faculté de Médecine Saint Antoine, Paris 75012, France
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Bigogno C, Khozin-Goldberg I, Cohen Z. Accumulation of arachidonic acid-rich triacylglycerols in the microalga Parietochloris incisa (Trebuxiophyceae, Chlorophyta). PHYTOCHEMISTRY 2002; 60:135-43. [PMID: 12009316 DOI: 10.1016/s0031-9422(02)00037-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The freshwater green microalga Parietochloris incisa is the richest known plant source of the polyunsaturated fatty acid (PUFA), arachidonic acid (20:4omega6, AA). While many microalgae accumulate triacylglycerols (TAG) in the stationary phase or under certain stress conditions, these TAG are generally made of saturated and monounsaturated fatty acids. In contrast, most cellular AA of P. incisa resides in TAG. Using various inhibitors, we have attempted to find out if the induction of the biosynthesis of AA and the accumulation of TAG are codependent. Salicylhydroxamic acid (SHAM) affected a growth reduction that was accompanied with an increase in the content of TAG from 3.0 to 6.2% of dry weight. The proportion of 18:1 increased sharply in all lipids while that of 18:2 and its down stream products, 18:3omega6, 20:3omega6 and AA, decreased, indicating an inhibition of the Delta12 desaturation of 18:1. Treatment with the herbicide SAN 9785 significantly reduced the proportion of TAG. However, the proportion of AA in TAG, as well as in the polar lipids, increased. These findings indicate that while there is a preference for AA as a building block of TAG, the latter can be produced using other fatty acids, when the production of AA is inhibited. On the other hand, inhibiting TAG construction did not affect the production of AA. In order to elucidate the possible role of AA in TAG we have labeled exponential cultures of P. incisa kept at 25 degrees C with [1-14C]arachidonic acid and cultivated the cultures for another 12 h at 25, 12 or 4 degrees C. At the lower temperatures, labeled AA was transferred from TAG to polar lipids, indicating that TAG of P. incisa may have a role as a depot of AA that can be incorporated into the membranes, enabling the organism to quickly respond to low temperature-induced stress.
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Affiliation(s)
- Chiara Bigogno
- The Laboratory for Microalgal Biotechnology, Albert Katz Department for Drylands Biotechnologies, Jacob Blaustein Institute for Desert Research, Ben Gurion University of the Negev, Sde-Boker Campus 84990, Israel
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Suzuki I, Kanesaki Y, Mikami K, Kanehisa M, Murata N. Cold-regulated genes under control of the cold sensor Hik33 in Synechocystis. Mol Microbiol 2001; 40:235-44. [PMID: 11298290 DOI: 10.1046/j.1365-2958.2001.02379.x] [Citation(s) in RCA: 202] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
A histidine kinase, Hik33, appears to sense decreases in temperature and to regulate the expression of certain cold-inducible genes in the cyanobacterium Synechocystis sp. PCC6803. To examine the role of Hik33 in the regulation of gene expression, we analysed a DeltaHik33 mutant using the DNA microarray technique. In wild-type cells, genes that were strongly induced at low temperature encoded proteins that were predominantly subunits of the transcriptional and translational machinery. Most cold-repressible genes encoded components of the photosynthetic machinery. Mutation of the hik33 gene suppressed the expression of some of these cold-regulated genes, which could be divided into three groups according to the effect of the mutation of hik33. In the first group, regulation of gene expression by low temperature was totally abolished; in the second group, the extent of such regulation was reduced by half; and, in the third group, such regulation was totally unaffected. These results suggest that expression of the genes in the first group is regulated solely by Hik33, expression of genes in the third group is regulated by an as yet unidentified cold sensor, and expression of genes in the second group is regulated by both these cold sensors.
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Affiliation(s)
- I Suzuki
- Department of Regulation Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
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Kiseleva LL, Horvà th I, Vigh LÃ, Los DA. Temperature-induced specific lipid desaturation in the thermophilic cyanobacteriumSynechococcus vulcanus. FEMS Microbiol Lett 1999. [DOI: 10.1111/j.1574-6968.1999.tb13617.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
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Allakhverdiev SI, Nishiyama Y, Suzuki I, Tasaka Y, Murata N. Genetic engineering of the unsaturation of fatty acids in membrane lipids alters the tolerance of Synechocystis to salt stress. Proc Natl Acad Sci U S A 1999; 96:5862-7. [PMID: 10318975 PMCID: PMC21951 DOI: 10.1073/pnas.96.10.5862] [Citation(s) in RCA: 165] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The role of unsaturated fatty acids in membrane lipids in the tolerance of the photosynthetic machinery to salt stress was studied by comparing the desA-/desD- mutant of Synechocystis sp. PCC 6803, which contained monounsaturated fatty acids, with the wild-type strain, which contained a full complement of polyunsaturated fatty acids. In darkness, the loss of oxygen-evolving photosystem II activity in the presence of 0.5 M NaCl or 0.5 M LiCl was much more rapid in desA-/desD- cells than in wild-type cells. Oxygen-evolving activity that had been lost during incubation with 0.5 M NaCl in darkness returned when cells were transferred to conditions that allowed photosynthesis or respiration. Recovery was much greater in wild-type than in desA-/desD- cells, and it was prevented by lincomycin. Thus, the unsaturation of fatty acids is important in the tolerance of the photosynthetic machinery to salt stress. It appears also that the activity and synthesis of the Na+/H+ antiporter system might be suppressed under high-salt conditions and that this effect can be reversed, in part, by the unsaturation of fatty acids in membrane lipids.
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Affiliation(s)
- S I Allakhverdiev
- Department of Regulation Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan
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Sato N, Nakamura A. Involvement of the 5'-untranslated region in cold-regulated expression of the rbpA1 gene in the cyanobacterium Anabaena variabilis M3. Nucleic Acids Res 1998; 26:2192-9. [PMID: 9547280 PMCID: PMC147538 DOI: 10.1093/nar/26.9.2192] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Transcript of the rbpA1 gene in Anabaena variabilis accumulates significantly at low growth temperatures below 28 degreesC. This accumulation was maximal at 16 degreesC. Accumulation of the rbpA1 transcript was completely abolished by rifampicin, but not by chloramphenicol. Photosynthesis was not required for this cold-induced accumulation. This accumulation of transcript was partly accounted for by increased stability of the rbpA1 transcript at low temperature. Expression of chimeric genes containing 3'-deleted rbpA1 sequences fused to the lacZ gene was regulated by low temperature when almost the entire 5'-untranslated region (5'-UTR) remained undeleted. Further deletion resulted in constitutive expression of the chimeric gene. The 5'-UTR sequence formed two types of complexes in vitro with protein extract from cells grown at 38 degreesC, but not with extract from the 22 degreesC grown cells. Affinity purification identified polypeptides of 75 and 32 kDa in Complex 1 and a 72 kDa polypeptide in Complex 2. These results are compatible with a model in which expression of the rbpA1 gene is regulated by transcriptional derepression at low temperature, although additional mechanisms, such as regulation of mRNA stability, might also contribute to temperature-dependent regulation.
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Affiliation(s)
- N Sato
- Department of Biochemistry and Molecular Biology, Faculty of Science, Saitama University, Urawa 338, Japan.
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Kis M, Zsiros O, Farkas T, Wada H, Nagy F, Gombos Z. Light-induced expression of fatty acid desaturase genes. Proc Natl Acad Sci U S A 1998; 95:4209-14. [PMID: 9539715 PMCID: PMC22467 DOI: 10.1073/pnas.95.8.4209] [Citation(s) in RCA: 70] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
In cyanobacterial cells, fatty acid desaturation is one of the crucial steps in the acclimation processes to low-temperature conditions. The expression of all the four acyl lipid desaturase genes of Synechocystis PCC 6803 was studied as a function of temperature and separately as a function of light. We used cells grown at 25 degreesC in light-activated heterotrophic growth conditions. In these cells, the production of alpha-linolenic acid and 18:4 fatty acids was negligible and the synthesis of gamma-linolenic acid was remarkably suppressed compared with those of the cells grown photoautotrophically. The cells grown in the light in the presence of glucose showed no difference in fatty acid composition compared with cells grown photoautotrophically. The level of desC mRNA for delta9 desaturase was not affected by either the temperature or the light. It was constitutively expressed at 25 degreesC with and without illumination. The level of desB transcripts was negligible in the dark-grown cells and was enhanced about 10-fold by exposure of the cells to light. The maximum level of expression occurred within 15 min. The level of desA and desD mRNAs was higher in dark-grown cells than that of desB mRNA for omega3 desaturase. However, the induction of both desA and desD mRNAs for delta12 and delta6 desaturases, respectively, was enhanced by light about 10-fold. Rifampicin, chloramphenicol, and 3-(3, 4-dichlorophenyl)-1,1-dimethylurea completely blocked the induction of the expression of desA, desB, and desD. Consequently, we suggest the regulatory role of light via photosynthetic processes in the induction of the expression of acyl lipid desaturases.
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Affiliation(s)
- M Kis
- Institute of Plant Biology, Biological Research Center of the Hungarian Academy of Sciences, P.O. Box 521, H-6701 Szeged, Hungary
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Sato N, Tachikawa T, Wada A, Tanaka A. Temperature-dependent regulation of the ribosomal small-subunit protein S21 in the cyanobacterium Anabaena variabilis M3. J Bacteriol 1997; 179:7063-71. [PMID: 9371454 PMCID: PMC179648 DOI: 10.1128/jb.179.22.7063-7071.1997] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
The rpsU gene, which encodes the ribosomal small-subunit protein S21 in Anabaena, is not a part of the macromolecular-synthesis operon as in most enterobacteria but rather is located downstream of the rbpA1 gene, which encodes an RNA-binding protein. Two types of transcripts were detected for this gene cluster. The level of the major rbpA1-rpsU transcript was about 10 times higher at 22 degrees C than at 38 degrees C, whereas the minor monocistronic rpsU transcript was more abundant at the higher temperature. The level of the S21 protein in relation to total protein was three times lower at 38 degrees C than at 22 degrees C. Analysis of isolated ribosomes indicated that S21 was present at an equimolar ratio with regard to other ribosomal proteins at 22 degrees C but that its level decreased with temperature. Conversely, the relative abundance of S5 increased with temperature. A decrease in the level of S21 at high temperature was also found in Synechocystis, in which rpsU is located downstream of the rrn operon. These results suggest that S21 is involved in the adaptation to changes in temperature in cyanobacteria.
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Affiliation(s)
- N Sato
- Department of Biochemistry and Molecular Biology, Faculty of Science, Saitama University, Urawa, Japan.
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Sakamoto T, Higashi S, Wada H, Murata N, Bryant DA. Low-temperature-induced desaturation of fatty acids and expression of desaturase genes in the cyanobacterium Synechococcus sp. PCC 7002. FEMS Microbiol Lett 1997; 152:313-20. [PMID: 9231425 DOI: 10.1111/j.1574-6968.1997.tb10445.x] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Changes in response to temperature of lipid classes, fatty acid composition and mRNA levels for acyl-lipid desaturase genes were studied in the marine unicellular cyanobacterium, Synechococcus sp. PCC 7002. The degree of unsaturation of C18 fatty acids increased in cells grown at lower temperature for all lipid classes, and omega 3 desaturation occurred specifically in cells grown at low temperature. While the level of 18:1(9) fatty acids declined, desaturation at the omega 3 position of C18 fatty acids increased gradually during a 12-h period after a temperature shift-down to 22 degrees C. However, the mRNA levels of the desA (delta 12 desaturase), desB (omega 3 desaturase) and desC (delta 9 desaturase) genes increased within 15 min after a temperature shift-down to 22 degrees C; the desaturase gene mRNA levels also rapidly declined within 15 min after a temperature shift-up to 38 degrees C. Therefore, the elevation of mRNA levels for the desaturase genes is not the rate-limiting event for the increased desaturation of membrane lipids after a temperature shift-down. The rapid, low-temperature-induced changes in mRNA levels occurred even when cells were grown under light-limiting conditions for which the growth rates at 22 degrees C and 38 degrees C were identical. These studies indicate that the ambient growth temperature, and not some other growth rate-related process, regulates the expression of acyl lipid desaturation in this cyanobacterium.
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Affiliation(s)
- T Sakamoto
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park 16802, USA
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Quoc KP, Dubacq JP. Effect of growth temperature on the biosynthesis of eukaryotic lipid molecular species by the cyanobacterium Spirulina platensis. BIOCHIMICA ET BIOPHYSICA ACTA 1997; 1346:237-46. [PMID: 9219908 DOI: 10.1016/s0005-2760(97)00039-8] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The incorporation of linoleic acid added at mmolar concentrations to the culture medium of the photosynthetic prokaryote Spirulina platensis results in the synthesis of membrane glycerolipids with a eukaryotic distribution of fatty acid chain length on the glycerol backbone (Pham Quoc et al., Biochim. Biophys. Acta [1993] 1168, 94-99). This distribution contrasts with the usual prokaryotic one found in lipids of cyanobacteria. A subsequent desaturation of the exogenously supplied fatty acid resulted in a large increase of gamma-linolenic acid. In order to estimate the capacities of S. platensis for bioconversion of fatty acids in lipid classes, the effects of different temperatures of growth were studied in linoleic acid-supplemented cultures. The lipid composition was affected by growth temperature, the synthesis of SQDG was stimulated at low temperature. The molecular species of each lipid were isolated and analyzed. Whatever the temperature of growth, the biosynthesis of eukaryotic C18/C18 lipid molecular species was observed in all lipid classes. Furthermore, the proportion of eukaryotic lipids increased at low temperature (24 degrees C). The desaturation of C18 fatty acids at C1 and C2 positions of the glycerol moiety occurred and was further stimulated when the growth temperature was lowered. The resulting proportion of gamma-linolenic acid increased significantly in cultures supplemented with linoleate at low temperatures. Finally a pathway for the synthesis of eukaryotic lipids and the desaturation of fatty acids esterified to the acyl lipids of linoleate-supplemented S. platensis can be suggested.
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Affiliation(s)
- K P Quoc
- Laboratoire de Photorégulation et Dynamique des membranes végétales,Ecole normale supérieure, Départment de Biologie, CNRS URA 1810, Paris, France.
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Nishida I, Murata N. CHILLING SENSITIVITY IN PLANTS AND CYANOBACTERIA: The Crucial Contribution of Membrane Lipids. ACTA ACUST UNITED AC 1996; 47:541-568. [PMID: 15012300 DOI: 10.1146/annurev.arplant.47.1.541] [Citation(s) in RCA: 288] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The contribution of membrane lipids, particularly the level of unsaturation of fatty acids, to chilling sensitivity of plants has been intensively discussed for many years. We have demonstrated that the chilling sensitivity can be manipulated by modulating levels of unsaturation of fatty acids of membrane lipids by the action of acyl-lipid desaturases and glycerol-3-phosphate acyltransferase. This review covers recent studies on genetic manipulation of these enzymes in transgenic tobacco and cyanobacteria with special emphasis on the crucial importance of the unsaturation of membrane lipids in protecting the photosynthetic machinery from photoinhibition under cold conditions. Furthermore, we review the molecular mechanism of temperature-induced desaturation of fatty acids and introduce our hypothesis that changes in the membrane fluidity is the initial event of the expression of desaturase genes.
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Affiliation(s)
- I. Nishida
- National Institute for Basic Biology, Okazaki, 444 Japan
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Murata N, Wada H. Acyl-lipid desaturases and their importance in the tolerance and acclimatization to cold of cyanobacteria. Biochem J 1995; 308 ( Pt 1):1-8. [PMID: 7755550 PMCID: PMC1136835 DOI: 10.1042/bj3080001] [Citation(s) in RCA: 203] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- N Murata
- Department of Regulation Biology, National Institute for Basic Biology, Okazaki, Japan
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Los D, Horvath I, Vigh L, Murata N. The temperature-dependent expression of the desaturase gene desA in Synechocystis PCC6803. FEBS Lett 1993; 318:57-60. [PMID: 8436227 DOI: 10.1016/0014-5793(93)81327-v] [Citation(s) in RCA: 58] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
We examined the temperature-dependent regulation of the expression of the desA gene, which encodes delta 12 desaturase of Synechocystis PCC6803. The level of desA transcript increased 10-fold within 1 h upon a decrease in temperature from 36 degrees C to 22 degrees C. This suggests that the low-temperature-induced desaturation of membrane lipid fatty acids is regulated at the level of the expression of the desaturase genes. The accumulation of the desA transcript depended on the extent of temperature change over a certain threshold level, but not on the absolute temperature.
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Affiliation(s)
- D Los
- National Institute for Basic Biology, Okazaki, Japan
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Tandeau de Marsac N, Houmard J. Adaptation of cyanobacteria to environmental stimuli: new steps towards molecular mechanisms. FEMS Microbiol Lett 1993. [DOI: 10.1111/j.1574-6968.1993.tb05866.x] [Citation(s) in RCA: 270] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
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Gombos Z, Wada H, Murata N. Unsaturation of fatty acids in membrane lipids enhances tolerance of the cyanobacterium Synechocystis PCC6803 to low-temperature photoinhibition. Proc Natl Acad Sci U S A 1992; 89:9959-63. [PMID: 1409727 PMCID: PMC50253 DOI: 10.1073/pnas.89.20.9959] [Citation(s) in RCA: 101] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Effect of the unsaturation of fatty acids in the glycerolipids of thylakoid membranes on low-temperature photoinhibition of photosynthesis was studied by mutation and transformation of the cyanobacterium Synechocystis PCC6803. When grown at 34 degrees C, the wild type contained mono-, di-, and triunsaturated lipids; a mutant, designated Fad6, contained mono- and diunsaturated lipids; and a transformant of Fad6, with a disrupted gene for desaturation and designated Fad6/desA::Kmr, contained only monounsaturated lipids. Fad6/desA::Kmr was the most susceptible among these strains to low-temperature photoinhibition of photosynthesis, whereas Fad6 and the wild type were apparently indistinguishable in terms of sensitivity to photoinhibition. This result suggests that the presence of diunsaturated fatty acids is important in protecting against low-temperature photoinhibition. The photoinhibition at room temperature, although much less significant than that at low temperature, was also affected by the unsaturation of fatty acids. By contrast, the photosynthetic transport of electrons, measured at various temperatures, was not affected by changes in extent of fatty acid unsaturation.
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Affiliation(s)
- Z Gombos
- Department of Regulation Biology, National Institute for Basic Biology, Okazaki, Japan
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Williams WP, Gounaris K. Stabilisation of PS-II-mediated electron transport in oxygen-evolving PS II core preparations by the addition of compatible co-solutes. BIOCHIMICA ET BIOPHYSICA ACTA 1992; 1100:92-7. [PMID: 1567886 DOI: 10.1016/0005-2728(92)90130-t] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Addition of high concentrations of compatible co-solutes such as sugars, sugar alcohols and polyols has recently been shown to lead to marked increases in the thermal stability of oxygen-evolution in chloroplasts (Williams et al. (1992) Biochim. Biophys. Acta 1099, 137-144). In this paper, a similar stabilisation is demonstrated for oxygen-evolving PS II core preparations. The presence of such co-solutes appears, however, to have no ability to stabilise PS II reaction-centre preparations against heat-induced changes in their absorption spectrum. Nor do they protect electron transport from artificial electron donors in PS II core preparations lacking the extrinsic 33 kDa polypeptide of the oxygen-evolution system. Measurements performed on core preparations retaining the 33 kDa polypeptide but lacking the 17 kDa and 23 kDa polypeptides indicate that the co-solutes protect PS-II-mediated electron transport by stabilising the binding of the 33 kDa polypeptide to the core complexes. These findings are discussed in terms of an extension of the general principles underlying the Hofmeister effect observed for soluble proteins to the stabilisation of photosynthetic membrane preparations.
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Affiliation(s)
- W P Williams
- Biomolecular Sciences Division, King's College London, UK
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Babu T, Sabat S, Mohanty P. Heat induced alterations in the photosynthetic electron transport and emission properties of the cyanobacterium Spirulina platensis. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1992. [DOI: 10.1016/1011-1344(92)85005-f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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A comparison of the major lipid classes and fatty acid composition of marine unicellular cyanobacteria with freshwater species. Arch Microbiol 1991. [DOI: 10.1007/bf00248602] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Froehlich JE, Poorman R, Reardon E, Barnum SR, Jaworski JG. Purification and characterization of acyl carrier protein from two cyanobacteria species. EUROPEAN JOURNAL OF BIOCHEMISTRY 1990; 193:817-25. [PMID: 2123456 DOI: 10.1111/j.1432-1033.1990.tb19405.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The acyl carrier protein (ACP), an essential protein cofactor for fatty acid synthesis, has been isolated from two cyanobacteria: the filamentous, heterocystous, Anabaena variabilis (ATCC 29211) and the unicellular Synechocystis 6803 (ATCC 27184). Both ACPs have been purified to homogeneity utilizing a three-column procedure. Synechocystis 6803 ACP was purified 1800-fold with 67% yield, while A. variabilis ACP was purified 1040-fold with 50% yield. Yields of 13.0 micrograms ACP/g Synechocystis 6803 and 9.0 micrograms ACP/g A. variabilis were achieved. Amino acid analysis indicated that these ACPs were highly charged acidic proteins similar to other known ACPs. Sequence analysis revealed that both cyanobacterial ACPs were highly conserved with both spinach and Escherichia coli ACP at the phosphopantetheine prosthetic group region. Examining the probability of alpha-helix and beta-turn regions in various ACPs, showed that cyanobacterial ACPs were more closely related to E. coli ACP than spinach ACP I. Immunoblot analysis and a competitive binding assay for ACP illustrated that both ACPs bound poorly to spinach ACP I antibody. SDS/PAGE and native PAGE of Synechocystis 6803 ACP and A. variabilis ACP showed that cyanobacteria ACPs co-migrated with E. coli ACP and had relative molecular masses of 18,100 and 17,900 respectively. Both native and urea gel analysis of acyl-ACP products from fatty acid synthase reactions demonstrated that bacterial ACPs and plant ACP gave essentially the same metabolic products when assayed using either bacterial or plant fatty acid synthase. A. variabilis and Synechocystis 6803 ACP could be acylated using E. coli acyl ACP synthetase.
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Affiliation(s)
- J E Froehlich
- Department of Chemistry, Miami University, Oxford, OH 45056
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Abstract
The effect of change in ambient temperature on fatty acid unsaturation has been studied in the cyanobacterium Anabaena variabilis. When cells isothermally grown at 22 degrees C are compared with those grown at 38 degrees C, the relative content of oleic acid decreases and that of linolenic acid increases in all of the lipid classes. After a temperature shift from 38 to 22 degrees C, palmitic acid is rapidly desaturated in monogalactocyldiacylglycerol, but in no other lipids, and oleic acid is slowly desaturated in most lipid classes. When cells of Anacystis nidulans are exposed to low temperature such as 0 degree C, they lose physiological activities and finally die. This low-temperature damage is initiated by the phase transition of lipids in the plasma membrane. The phase transition of thylakoid membrane that occurs at intermediate temperature produces loss of activity related to photosynthesis. This is, however, recovered when the cells are rewarmed to growth temperature. A model for the mechanism of the low-temperature damage in the cyanobacterial cells is proposed.
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Affiliation(s)
- N Murata
- National Institute for Basic Biology, Okazaki, Japan
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Lanosterol and diacylglycerophosphocholines in lipids from whole cells and thylakoids of the cyanobacterium Chlorogloeopsis fritschii. Arch Microbiol 1987. [DOI: 10.1007/bf00429638] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Van Walraven HS, Koppenaal E, Marvin HJ, Hagendoorn MJ, Kraayenhof R. Lipid specificity for the reconstitution of well-coupled ATPase proteoliposomes and a new method for lipid isolation from photosynthetic membranes. EUROPEAN JOURNAL OF BIOCHEMISTRY 1984; 144:563-9. [PMID: 6237908 DOI: 10.1111/j.1432-1033.1984.tb08502.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The lipid specificity for the enzymatic and proton-translocating functions of a reconstituted thermophilic ATPase complex has been investigated. The proteoliposomes were prepared from the ATPase complex of the thermophilic cyanobacterium Synechococcus 6716 and various lipids and lipid mixtures extracted from this organism and from a related mesophilic strain. Some commercial lipids were used as well. An improved method of lipid extraction from chlorophyll-containing membranes is presented. This method is based on acetone extraction and additional chlorophyll separation and results in higher yields, less chlorophyll contamination and a simpler procedure than the conventional methods based on chloroform/methanol extraction. The lipids of Synechococcus 6716 thus extracted were fractionated by thin-layer chromatography. The fatty acyl chain composition of the separated lipids was analyzed by gas chromatography. The coupling quality of the reconstituted ATPase proteoliposomes made of different lipids was tested by a membrane-bound fluorescent probe and uncoupler stimulation of ATP hydrolysis. None of the separated lipids alone was able to produce a well-coupled system. The best results were obtained with the native lipid mixture. The minimum requirement was the combination of a typical bilayer-forming lipid and the non-bilayer (hexagonal II structure)-forming monogalactosyldiacylglycerol. Lipids from the mesophilic Synechococcus 6301 and commercial lipids (also mesophilic) produced poorly coupled vesicles but significant improvement was obtained when thermophilic monogalactosyldiacylglycerol was included. Both the reconstituted and solubilized ATPase complex have a sharp temperature optimum at 50 degrees C. The effect of reconstitution and measurement temperatures on the yield of well-coupled vesicles from different lipid sources was also studied.
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