Changes in properties of DNA caused by gamma and ultraviolet radiation. Dependence of conformational changes on the chemical nature of the damage

Saturation photodimerization of thymines in DNA

Acetophenone sensitizes the uv photodimerization of adjacent thymines in nucleic acids and under steady state irradiation induces irreversible saturation dimerization. Monte Carlo and analytical techniques are used to calculate the saturation dimerization limits for various nucleic acids, under the assumption that acetophenone-sensitized dimerization occurs by a random irreversible process. A comparison of these calculated results with experimental values indicates that sensitized dimerization occurs by an effectively random process only in single-stranded DNA or in native DNA of very high A.T content. In general, nucleation phenomena operate in native DNA that serve to stereochemically restrict saturation dimerization limits below those expected for random dimerization.

Adsorptive transfer stripping voltammetry: determination of nanogram quantities of DNA immobilized at the electrode surface

In adsorptive transfer stripping voltammetry (AdTSV), DNA is first adsorbed at the electrode, the electrode is washed and transferred (with the adsorbed layer) in the medium not containing DNA, and voltammetric analysis is performed in this medium. Adsorption can be performed from a drop of DNA solution, which makes it possible to reduce the volume of the analyzed sample by two orders of magnitude as compared to that of conventional voltammetry. With the hanging mercury drop electrode the limit of detection of single-stranded DNA is below 0.1 micrograms/ml; thus if the adsorption is performed from a 10-microliter drop of DNA solution subnanogram quantities of single-stranded DNA are sufficient for the analysis. In AdTSV the behavior of single- and double-stranded DNAs markedly differ from each other in a manner similar to that in the conventional voltammetric or polarographic analysis; AdTSV can thus be used in DNA structure analysis. In AdTSV the DNA transport and its adsorption at the electrode are separated from the electrode process; due to this fact it is possible (a) to perform the voltammetric analysis of DNA from media not suitable for voltammetric analysis of the conventional type, (b) to study the interaction of immobilized DNA with other substances in solution without the results of the voltammetric analysis being influenced by DNA interactions in the bulk of solution, and (c) to exploit the differences of adsorbability of DNA and other substances in order to separate them on the electrode.

An electrochemical analysis of changes in properties of DNA caused by ionizing and ultraviolet radiations

Electrooxidation and electroreduction of gamma- and u.v.-irradiated DNA were studied by means of differential pulse voltammetry at the graphite electrode and differential pulse polarography at the dropping mercury electrode. Two separated voltammetric oxidation peaks G and A were used for monitoring conformational changes in guanine . cytosoine (GC) and adenine . thyminde (AT) pairs respectively in irradiated double-stranded (ds) DNA. Pulse-polarographic reduction peak III was used for detection of denatured DNA in the irradiated samples of ds DNA. It was found that the heights of peaks G and A of ds DNA did not change with the radiation dose after relatively low doses of gamma- and u.v.-radiations (up to ca. 40 krads and 1 X 10(4) Jm-2, respectively, when no single-stranded (ss) DNA was detected in the irradiated DNA samples. After higher doses of radiation the occurrence of ss DNA or ss segments in the irradiated samples of ds DNA was accompanied by an increase of peaks G and A; however, peak A grew more rapidly with the increasing dose than peak G. It was concluded that the results obtained support the assumption, according to which regions of ds DNA rich in AT pairs are more susceptible to denaturation caused by gamma- and u.v.-radiations.

Genomic integrity of T1 DNA after gamma-and ultraviolet irradiation

T1 DNA, gamma-irradiated in the phage particle or irradiated with ultraviolet light was checked for structural integrity by kinetics of melting and reannealing. gamma-Irradiated DNA differed in all thermokinetic properties by a factor of 3-4 from DNA degraded by mechanical or enzymatical treatments. Ultraviolet irradiation caused much smaller effects than gamma-irradiation. Considering the frequency of pyrimidine dimers in relation to the gamma-ray induced lesions, strong evidence can be derived, that in addition to single base damages, local denatured regions are produced by gamma-irradiation. Such regions, formed possibly by direct absorption of radiation energy in DNA, i.e. by primary ionizations, are associated with base lesions and are passed over during reannealing.

Structural changes of ultraviolet-irradiated DNA derived from hydrodynamic measurements

The paper reports on sedimentation and viscosity measurements performed on ultraviolet-irradiated DNA from T7 phage and calf thymus. From the hydrodynamic data the relative changes in the mean molecular weight, radius of gyration, and effective Kuhn statistical segment length were calculated. The results show that ultraviolet irradiation (254 nm) leads to a significant decrease of the effective statistical segment length of DNA which may be due to small local helix kinks (produced by the generation of photodimers) and a local increase of chain flexibility. Alterations in the overall DNA conformation may be observed even at low fluences where the mean molecular weight almost stays constant. The locally distorted helix regions possibly may serve as recognition sites in the first step of excision repair.

Endonuclease alpha from Saccharomyces cerevisiae shows increased activity on ultraviolet irradiated native DNA

Endonuclease alpha isolated from the nucleus of the yeast Saccharomyces cerevisiae is a DNA endonuclease which has been shown to act preferentially on denatured T7 DNA. The purified enzyme is more active with UV-irradiated native T7 DNA than with unirradiated substrate. The relation between damage, measured by pyrimidine dimer concentration, and excess endonuclease activity is most readily explained by local denaturation caused by presence of pyrimidine dimers. When three radiation sensitive mutants of yeast were tested for the level of endonuclease alpha present, none were found lacking the enzyme. However, nuclei of strain rad 1-1, a mutant that may be defective in heteroduplex repair as well as excision repair, were found to contain reduced levels of the endonuclease. The enzyme isolated from this strain had less than one half the specific activity of similar preparations from wild type yeast.