1
|
Structure and gene cluster of the O-polysaccharide from Pseudomonas veronii A-6-5 and its uranium bonding. Int J Biol Macromol 2020; 165:2197-2204. [DOI: 10.1016/j.ijbiomac.2020.10.038] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Revised: 09/15/2020] [Accepted: 10/05/2020] [Indexed: 01/10/2023]
|
2
|
Kurzylewska M, Dworaczek K, Pękala-Safińska A, Turska-Szewczuk A. Structure of the O-specific polysaccharide of Aeromonas veronii bv. sobria strain Pt393 isolated from rainbow trout (Oncorhynchus mykiss), which contains a rarely occurring sugar 4-acetamido-4,6-dideoxy-d-galactose, tomosamine. Carbohydr Res 2020; 493:108036. [PMID: 32504970 DOI: 10.1016/j.carres.2020.108036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 05/13/2020] [Accepted: 05/16/2020] [Indexed: 11/16/2022]
Abstract
The O-specific polysaccharide (OPS) was isolated from the lipopolysaccharide of Aeromonas veronii bv. sobria strain Pt393, which is pathogenic to the rainbow trout (Oncorhynchus mykiss), after mild acid hydrolysis followed by GPC. The high-molecular-weight OPS fraction was studied with chemical methods, mass spectrometry, and 1H and 13C NMR spectroscopy techniques, including 2D 1H,1H COSY, TOCSY, NOESY, 1H-detected heteronuclear 1H,13C HSQC, and HMBC experiments. It was found that the O-specific polysaccharide was built of a tetrasaccharide repeating unit composed of α-GalpNAc, α-FucpNAc, β-QuipNAc, and α-Fucp4NAc (4-acetamido-4,6-dideoxy-d-galactose, tomosamine) residues. The following structure of the OPS of A. sobria strain Pt393 was established: →4)-α-d-GalpNAc-(1 → 3)-α-l-FucpNAc-(1 → 3)-β-d-QuipNAc-(1 → 3)-α-d-Fucp4NAc-(1→.
Collapse
Affiliation(s)
- Maria Kurzylewska
- Department of Genetics and Microbiology, M. Curie-Sklodowska University, Akademicka 19, 20-033, Lublin, Poland
| | - Katarzyna Dworaczek
- Department of Genetics and Microbiology, M. Curie-Sklodowska University, Akademicka 19, 20-033, Lublin, Poland
| | - Agnieszka Pękala-Safińska
- Department of Fish Diseases, National Veterinary Research Institute, Partyzantow 57, 24-100, Pulawy, Poland
| | - Anna Turska-Szewczuk
- Department of Genetics and Microbiology, M. Curie-Sklodowska University, Akademicka 19, 20-033, Lublin, Poland.
| |
Collapse
|
3
|
Perepelov AV, Guo X, Filatov AV, Shashkov AS, Senchenkova SN, Li B. Structure elucidation and gene cluster annotation of the O-antigen of Vibrio cholerae O100 containing two rarely occurred amino sugar derivatives. Carbohydr Res 2018; 472:98-102. [PMID: 30530139 DOI: 10.1016/j.carres.2018.11.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2018] [Revised: 10/31/2018] [Accepted: 11/03/2018] [Indexed: 11/15/2022]
Abstract
O-polysaccharide (O-antigen) was isolated from the lipopolysaccharide of Vibrio cholerae O100 and studied by component analyses and 1D and 2D NMR spectroscopy. The following structure of the O-polysaccharide was established: →3)-β-d-QuipNAc4N(dHh)-(1 → 3)-α-d-Fucp4N(RHb)-(1 → 3)-α-l-FucpNAc-(1→ where Hb and dHh indicate 3-hydroxybutanoyl and 3,5-dihydroxyhexanoyl, respectively. The O-antigen gene cluster of V. cholerae O100 has been sequenced. The gene functions were tentatively assigned by comparison with sequences in the available databases and found to be in agreement with the OPS structure.
Collapse
Affiliation(s)
- Andrei V Perepelov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia.
| | - Xi Guo
- TEDA Institure of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, China
| | - Andrei V Filatov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Alexander S Shashkov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Sofia N Senchenkova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia
| | - Bin Li
- TEDA Institure of Biological Sciences and Biotechnology, Nankai University, TEDA, Tianjin, China
| |
Collapse
|
4
|
Sigida EN, Fedonenko YP, Shashkov AS, Zdorovenko EL, Ignatov VV, Knirel YA. Structural studies of the O-specific polysaccharide from detergent degrading bacteria Pseudomonas putida TSh-18. Carbohydr Res 2017; 448:1-5. [DOI: 10.1016/j.carres.2017.05.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Revised: 05/12/2017] [Accepted: 05/15/2017] [Indexed: 10/19/2022]
|
5
|
Perepelov AV, Shashkov AS, Tomshich SV, Komandrova NA, Nedashkovskaya OI. Structure of the O-specific polysaccharide from a marine bacterium Cellulophaga pacifica containing rarely occurred sugars, Fuc4NAc and ManNAcA. Carbohydr Res 2013; 372:69-72. [DOI: 10.1016/j.carres.2013.02.011] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2012] [Revised: 02/25/2013] [Accepted: 02/26/2013] [Indexed: 11/17/2022]
|
6
|
Clark CG, Kropinski AM, Parolis H, Grant CCR, Trout-Yakel KM, Franklin K, Ng LK, Paramonov NA, Parolis LAS, Rahn K, Tabor H. Escherichia coli O123 O antigen genes and polysaccharide structure are conserved in some Salmonella enterica serogroups. J Med Microbiol 2009; 58:884-894. [DOI: 10.1099/jmm.0.007187-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The serotyping of O and H antigens is an important first step in the characterization of Salmonella enterica. However, serotyping has become increasingly technically demanding and expensive to perform. We have therefore sequenced additional S. enterica O antigen gene clusters to provide information for the development of DNA-based serotyping methods. Three S. enterica isolates had O antigen gene clusters with homology to the Escherichia coli O123 O antigen region. O antigen clusters from two serogroup O58 S. enterica strains had approximately 85 % identity with the E. coli O123 O antigen region over their entire length, suggesting that these Salmonella and E. coli O antigen regions evolved from a common ancestor. The O antigen cluster of a Salmonella serogroup O41 isolate had a lower level of identity with E. coli O123 over only part of its O antigen DNA cluster sequence, suggesting a different and more complex evolution of this gene cluster than those in the O58 strains. A large part of the Salmonella O41 O antigen DNA cluster had very close identity with the O antigen cluster of an O62 strain. This region of DNA homology included the wzx and wzy genes. Therefore, molecular serotyping tests using only the O41 or O62 wzx and wzy genes would not differentiate between the two serogroups. The E. coli O123 O-antigenic polysaccharide and its repeating unit were characterized, and the chemical structure for E. coli O123 was entirely consistent with the O antigen gene cluster sequences of E. coli O123 and the Salmonella O58 isolates. An understanding of both the genetic and structural composition of Salmonella and E. coli O antigens is necessary for the development of novel molecular methods for serotyping these organisms.
Collapse
Affiliation(s)
- Clifford G. Clark
- Department of Medical Microbiology, 510 Medical Sciences Building, University of Manitoba, 730 William Avenue, Winnipeg, MB R3T 2N2, Canada
- Enteric Diseases Program, Bacteriology and Enteric Diseases Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
| | - Andrew M. Kropinski
- Laboratory for Foodborne Zoonoses, Public Health Agency of Canada, Guelph, ON N1G 3W4, Canada
| | - Haralambos Parolis
- School of Pharmaceutical Sciences, Rhodes University, Grahamstown 6140, South Africa
| | - Christopher C. R. Grant
- Enteric Diseases Program, Bacteriology and Enteric Diseases Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
| | - Keri M. Trout-Yakel
- Enteric Diseases Program, Bacteriology and Enteric Diseases Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
| | - Kristyn Franklin
- Laboratory for Foodborne Zoonoses, Public Health Agency of Canada, Guelph, ON N1G 3W4, Canada
| | - Lai-King Ng
- Department of Medical Microbiology, 510 Medical Sciences Building, University of Manitoba, 730 William Avenue, Winnipeg, MB R3T 2N2, Canada
- Enteric Diseases Program, Bacteriology and Enteric Diseases Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
| | - Nikolay A. Paramonov
- School of Pharmaceutical Sciences, Rhodes University, Grahamstown 6140, South Africa
| | - Lesley A. S. Parolis
- School of Pharmaceutical Sciences, Rhodes University, Grahamstown 6140, South Africa
| | - Kris Rahn
- Laboratory for Foodborne Zoonoses, Public Health Agency of Canada, Guelph, ON N1G 3W4, Canada
| | - Helen Tabor
- Enteric Diseases Program, Bacteriology and Enteric Diseases Program, National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3R2, Canada
| |
Collapse
|
7
|
Kochetkov NK. Unusual monosaccharides: components of O-antigenic polysaccharides of microorganisms. RUSSIAN CHEMICAL REVIEWS 2007. [DOI: 10.1070/rc1996v065n09abeh000229] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
8
|
Leone S, Silipo A, L.Nazarenko E, Lanzetta R, Parrilli M, Molinaro A. Molecular structure of endotoxins from Gram-negative marine bacteria: an update. Mar Drugs 2007; 5:85-112. [PMID: 18463721 PMCID: PMC2365688 DOI: 10.3390/md503085] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2007] [Accepted: 09/17/2007] [Indexed: 11/16/2022] Open
Abstract
Marine bacteria are microrganisms that have adapted, through millions of years, to survival in environments often characterized by one or more extreme physical or chemical parameters, namely pressure, temperature and salinity. The main interest in the research on marine bacteria is due to their ability to produce several biologically active molecules, such as antibiotics, toxins and antitoxins, antitumor and antimicrobial agents. Nonetheless, lipopolysaccharides (LPSs), or their portions, from Gram-negative marine bacteria, have often shown low virulence, and represent potential candidates in the development of drugs to prevent septic shock. Besides, the molecular architecture of such molecules is related to the possibility of thriving in marine habitats, shielding the cell from the disrupting action of natural stress factors. Over the last few years, the depiction of a variety of structures of lipids A, core oligosaccharides and O-specific polysaccharides from LPSs of marine microrganisms has been given. In particular, here we will examine the most recently encountered structures for bacteria belonging to the genera Shewanella, Pseudoalteromonas and Alteromonas, of the gamma-Proteobacteria phylum, and to the genera Flavobacterium, Cellulophaga, Arenibacter and Chryseobacterium, of the Cytophaga-Flavobacterium-Bacteroides phylum. Particular attention will be paid to the chemical features expressed by these structures (characteristic monosaccharides, non-glycidic appendages, phosphate groups), to the typifying traits of LPSs from marine bacteria and to the possible correlation existing between such features and the adaptation, over years, of bacteria to marine environments.
Collapse
Affiliation(s)
- Serena Leone
- Dipartimento di Chimica Organica e Biochimica, Università degli studi di Napoli “Federico II”, via Cintia 4, I-80126 Napoli, Italy
| | - Alba Silipo
- Dipartimento di Chimica Organica e Biochimica, Università degli studi di Napoli “Federico II”, via Cintia 4, I-80126 Napoli, Italy
| | - Evgeny L.Nazarenko
- Pacific Institute of Bioorganic Chemistry, Far-East Branch of the Russian Academy of Sciences, 690022 Vladivostok-22, Russian Federation
| | - Rosa Lanzetta
- Dipartimento di Chimica Organica e Biochimica, Università degli studi di Napoli “Federico II”, via Cintia 4, I-80126 Napoli, Italy
| | - Michelangelo Parrilli
- Dipartimento di Chimica Organica e Biochimica, Università degli studi di Napoli “Federico II”, via Cintia 4, I-80126 Napoli, Italy
| | - Antonio Molinaro
- Dipartimento di Chimica Organica e Biochimica, Università degli studi di Napoli “Federico II”, via Cintia 4, I-80126 Napoli, Italy
| |
Collapse
|
9
|
Kilcoyne M, Shashkov AS, Perepelov AV, Nazarenko EL, Gorshkova RP, Ivanova EP, Widmalm G, Savage AV. Structure of the O-specific polysaccharide from Shewanella japonica type strain KMM 3299T containing the rare amino sugar Fuc4NAc. Carbohydr Res 2005; 340:1557-61. [PMID: 15882857 DOI: 10.1016/j.carres.2005.01.040] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2004] [Revised: 01/24/2005] [Accepted: 01/29/2005] [Indexed: 10/25/2022]
Abstract
An acidic O-specific polysaccharide (PS) of the agar-digesting bacterium Shewanella japonica with the type strain KMM 3299(T) was obtained by mild acid hydrolysis of the lipopolysaccharide. The polysaccharide was studied by component analysis, methylation analysis, (1)H and (13)C NMR spectroscopy, including 2D NMR experiments. The PS was determined to have the following structure involving three unusual amino sugars:
Collapse
|
10
|
Hashimoto M, Asai Y, Jinno T, Adachi S, Kusumoto S, Ogawa T. Structural elucidation of polysaccharide part of glycoconjugate from Treponema medium ATCC 700293. EUROPEAN JOURNAL OF BIOCHEMISTRY 2003; 270:2671-9. [PMID: 12787034 DOI: 10.1046/j.1432-1033.2003.03644.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Glycoconjugates are distributed on the cell surfaces of some small-sized treponemes and have been reported to be completely different from lipopolysaccharides. We separated a glycoconjugate fraction from Treponema medium ATCC 700293, a medium-sized oral spirochete, to assess its immunobiological activities and elucidate the chemical structure of its polysaccharide part using phenol/water extraction, hydrophobic chromatography, and gel filtration. The glycoconjugate showed negligible or weak endotoxic and immunobiological properties. The chemical structure of the polysaccharide part was shown by two-dimensional NMR and MALDI-TOF-MS to be a tetrasaccharide backbone with two amino acids: [-->4)beta-d-GlcpNAc3NAcA(1-->4)beta-d-ManpNAc3NAOrn(1-->3)beta-d-GlcpNAc(1-->3)alpha-D-Fucp4NAsp(1-->] where GlcNAc3NAcA is 2,3-diacetamido-2,3-dideoxyglucuronic acid, ManNAc3NAOrn is Ndelta-(2-acetamido-3-amino-2,3-dideoxymannuronyl)ornithine, and Fuc4NAsp is 4-(alpha-aspartyl)amino-4,6-dideoxygalactose.
Collapse
Affiliation(s)
- Masahito Hashimoto
- Department of Oral Microbiology, Asahi University School of Dentistry, Gifu, Japan; Graduate School of Science, Osaka University, Osaka, Japan
| | | | | | | | | | | |
Collapse
|
11
|
Haseley SR, Holst O, Brade H. Structural and serological characterisation of the O-antigenic polysaccharide of the lipopolysaccharide from Acinetobacter strain 90 belonging to DNA group 10. EUROPEAN JOURNAL OF BIOCHEMISTRY 1997; 245:470-6. [PMID: 9151981 DOI: 10.1111/j.1432-1033.1997.t01-1-00470.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Water-soluble lipopolysaccharide (phenol/water extraction) isolated from Acinetobacter strain 90, which belongs to DNA group 10, was hydrolysed with 1% acetic acid, ultracentrifuged, and water-soluble products finally eluted from a Sephadex G-50 column. The major fraction, a polysaccharide, contained D-Gal, D-GlcNAc, D-GalNAc, and 4,6-dideoxy-4-[(R)-3-hydroxybutyramido]-D-galactose (Fuc4NBuOH). The polysaccharide was characterised by means of monosaccharide analyses, Smith-degradation, N-deacetylation/deamination, and NMR studies, and was shown to have a branched pentasaccharide repeating unit. [structure in text] This structure was specifically recognised in western blots and enzyme immunoassays by polyclonal rabbit antisera.
Collapse
Affiliation(s)
- S R Haseley
- Division of Medical and Biochemical Microbiology, Research Centre Borstel, Centre for Medicine and Biosciences, Germany
| | | | | |
Collapse
|
12
|
|
13
|
Winn AM, Miles CT, Wilkinson SG. Structure of the O3 antigen of Stenotrophomonas (Xanthomonas or Pseudomonas) maltophilia. Carbohydr Res 1996; 282:149-56. [PMID: 8721742 DOI: 10.1016/0008-6215(95)00359-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The O antigen isolated from the lipopolysaccharide of a strain of Stenotrophomonas (Xanthomonas or Pseudomonas) maltophilia serogroup O3 was found to contain 4-acetamido-4,6-dideoxy-D-galactose, D-fucose, and N-acetyl-D-glucosamine. By means of chemical degradations and NMR spectroscopy the repeating unit of the O-specific polymer was determined to be a branched trisaccharide repeating-unit of the structure shown.
Collapse
Affiliation(s)
- A M Winn
- School of Chemistry, University of Hull, UK
| | | | | |
Collapse
|
14
|
Knirel YA, Veremeychenko SN, Zdorovenko GM, Shashkov AS, Paramonov NA, Kochetkov NK. Somatic antigens of pseudomonads: structure of the O-specific polysaccharide of Pseudomonas fluorescens biovar A strain IMV 472. Carbohydr Res 1994; 259:147-51. [PMID: 7518743 DOI: 10.1016/0008-6215(94)84206-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Y A Knirel
- N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow
| | | | | | | | | | | |
Collapse
|