Density functional calculations on hydrocarbon isodesmic reactions

Ligand Structure Determines Nanoparticles' Atomic Structure, Metal-Ligand Interface and Properties

The nature of the ligands dictates the composition, molecular formulae, atomic structure and the physical properties of thiolate protected gold nanomolecules, Aun(SR)m. In this review, we describe the ligand effect for three classes of thiols namely, aliphatic, AL or aliphatic-like, aromatic, AR, or bulky, BU thiol ligands. The ligand effect is demonstrated using three experimental setups namely: (1) The nanomolecule series obtained by direct synthesis using AL, AR, and BU ligands; (2) Molecular conversion and interconversion between Au38(S-AL)24, Au36(S-AR)24, and Au30(S-BU)18 nanomolecules; and (3) Synthesis of Au38, Au36, and Au30 nanomolecules from one precursor Aun(S-glutathione)m upon reacting with AL, AR, and BU ligands. These nanomolecules possess unique geometric core structure, metal-ligand staple interface, optical and electrochemical properties. The results unequivocally demonstrate that the ligand structure determines the nanomolecules' atomic structure, metal-ligand interface and properties. The direct synthesis approach reveals that AL, AR, and BU ligands form nanomolecules with unique atomic structure and composition. Similarly, the nature of the ligand plays a pivotal role and has a significant impact on the passivated systems such as metal nanoparticles, quantum dots, magnetic nanoparticles and self-assembled monolayers (SAMs). Computational analysis demonstrates and predicts the thermodynamic stability of gold nanomolecules and the importance of ligand-ligand interactions that clearly stands out as a determining factor, especially for species with AL ligands such as Au38(S-AL)24.

Theoretical ONIOM2 Study on Pyridine Adsorption in the Channels and Intersection of ZSM-5

The structures of the acid sites in the channels and intersections of H-, Li-, and Na-ZSM-5 (ZSM = zeolite socony mobil) and their interactions with pyridine molecule have been computed by using three corresponding models containing 22 tetrahedral sites. The calculated adsorption energies of pyridine in the intersection regions of H-, Li-, and Na-ZSM-5 are 197.0, 172.5, and 122.3 kJ/mol, respectively, in good agreement with the respective experimental values of 200 +/- 5, 155-195, and 120 kJ/mol, while those in the straight and sinusoidal channels are much smaller (157.9 and 127.6, 152.2 and 149.4, and 150.4 and 109.9 kJ/mol, respectively). These indicate that the most probable adsorption site for pyridine in ZSM-5 is the acidic site located in the intersection region. The structural parameters of the adsorption complexes show that the acidic proton in the three models of H-ZSM-5 has been transferred to the nitrogen of pyridine, while in alkali cation-exchanged ZSM-5, the coordination of the alkali cation to the nitrogen atom of pyridine dominates the overall interaction. In addition, the adsorption complexes were further stabilized by the long-range electrostatic interaction between the positively charged pyridine hydrogen atoms and the negatively charged lattice oxygen atoms of the zeolite framework. In the intersection regions of H-, Li-, and Na-ZSM-5, the coordination energy of the charge-compensating cation to the pyridine nitrogen amounts to 58, 60, and 68% of the total adsorption energy, respectively, while another 42, 40, and 32%, respectively, is due to long-range electrostatic interactions. This indicates that the zeolite lattice framework surrounding the adsorption site has important contributions to the adsorption energy of the pyridine molecule.