Computer programs for neuroanatomy: three-dimensional reconstruction and analysis of populations of cortical neurons and other bodies with a laminar distribution

Quantitative measurement of afferent layers in the ferret inferior colliculus: DNLL projections to sublayers

In the central nucleus of the inferior colliculus (IC), afferent projections are aligned with dendritic arbors of disk-shaped cells, forming fibrodendritic layers. One feature that may serve as a guide for study of the intrinsic organization of the IC layers is the segregation of certain inputs to bands and patches within the layers of the central nucleus. In this study, we used Phaseolus leucoagglutinin as an anterograde tracer to examine the projections from the dorsal nucleus of the lateral lemniscus to the contralateral IC in adult ferrets. The labeled afferent projections distributed along the IC layers in a series of bands where there were dense endings and interband spaces where there were few if any endings. Branches of individual labeled axons that were reconstructed distributed within a single afferent band. Measurements of both the terminal density distribution and the optical density across the band were similar indicating that afferent bands were approximately 85 microm thick. Quantitative measurements of the labeled afferent bands will enhance comparison with other afferent projections and analysis of afferent development and plasticity.

Estereoscopia aplicada à neuroanatomia: estudo comparativo entre as técnicas de filtro de cores e de polarização

Atualmente há grande necessidade de maior disponibilização de material didático no ensino médico. A escassez de segmentos anatômicos e a toxicidade dos conservantes, como o formol, têm gerado uma busca intensa por novos meios de demonstração da anatomia humana. Como solução para esta dificuldade pode-se utilizar imagens tridimensionais (3D), que facilitam o processo de aprendizado. Este estudo tem como objetivo comparar e descrever duas técnicas de reprodução de imagens bidimensionais em três dimensões, o que é chamado de estereoscopia. Os dois métodos avaliados foram o de filtro de cores (anaglífico) e o de luz polarizada. As técnicas foram analisadas segundo a nitidez e o efeito 3D. Avaliaram-se 14 imagens por 5 pessoas, com notas de 0 a 4. A média total da técnica de polarização foi superior em relação à técnica anaglífica. Ambas realizam codificação de imagens, que consiste na separação e na exclusividade com que cada olho vê a imagem correspondente. Após vários ensaios fotográficos e adaptações gradativas a uma melhor técnica, baseando-se em conhecimentos de física elementar, fotografia e neuroanatomia, concluímos que ambas são capazes de produzir efeito 3D. No entanto, a melhor técnica, em termos de qualidade final da imagem foi a de polarização, não alterando a coloração natural da peça, mantendo traços nítidos e possuindo menor custo.

Postnatal development of the human primary motor cortex: a quantitative cytoarchitectonic analysis

The postnatal development of the human primary motor cortex (area 4) was analyzed in 54 individuals ranging in age from birth to 90 years. Three parameters defining major cytoarchitectonic features (areal fraction, numerical density and mean area of cells) were measured in vertical columns extending from the pial surface to the border between cortex and underlying white matter. The data were compiled in profile curves that reveal or more detailed laminar pattern than the classical cytoarchitectonic descriptions. The most pronounced decreases in numerical density and areal fraction of Nissl-stained cells profiles during early postnatal ontogeny are observed in layer II. A clearly delineable layer IV, which is still recognizable in the newborn, disappears gradually during the first postnatal months. Although the width of the cortex as a whole increases during this period, layer V, the main source of pyramidal tract fibers, is the only lamina that also increases in relative thickness. The other layers remain stable or become relatively thinner. These results reveal specific laminar growth processes in area 4, which take place in parallel with the functional maturation of the cortical motor system.

Lamellar organization of pontocerebellar neuronal populations. A multi-tracer and 3-D computer reconstruction study in the cat

This study deals with the three-dimensional arrangement of populations of pontocerebellar cell bodies projecting to the parafloccular complex. The fluorescent tracers rhodamine B isothiocyanate, fluoro-gold and fast blue were injected in either adjacent or separated cerebellar folia. A set of coordinates (x, y, z) was assigned to each retrogradely labelled cell and the total distribution reconstructed and displayed on a graphics workstation. At a large scale, we found that the majority of the cells of each labelled population (all projecting to the same folium) were confined to a lamella-shaped tissue volume. Each lamella extended from medial to lateral, and accordingly followed the curving of the pontine grey around the corticospinal and corticobulbar fibre tracts. At a smaller scale, i.e. within each lamellar subspace, the neurons belonging to one labelled population were distributed in aggregates of various shapes. To enable further analysis of the shapes of the intralaminar aggregates, we developed a computer program for unfolding of the lamellae, based on cubic B-spline approximation. The flattened reconstructions were three-dimensional polygonal windows, circumscribing the large majority of the labelled cell swarm (usually 70-80% of the total number of labelled cells in one population). The present findings, taken together with previous data on a gradual, rather than disjunctive, shift of pontocerebellar neuronal position in relation to a gradual shift of target region (Bjaalie et al., Anat. Rec.,231, 510-523, 1991), suggest that the cerebropontocerebellar system may be organized according to a set of fairly simple topographic rules.

Computer methods in neuroanatomy: determining mutual orientation of whole neuronal arbors

In most neurons orientation can be recognized because their arbors are more or less polarized and/or flattened. These are morphological characteristics of great functional importance. This paper deals with three-dimensional display and mathematical definition of orientation planes and vectors in whole arbors. An orientation plane can be derived from the flattest rectangular prism with which it is possible to enclose the arbor, or may be found by best-fit least square determination (based on all digitized points of the arbor). Both approaches allow description and comparison, in quantitative terms, of the orientation of neurons under various normal, pathological or experimental conditions.

Organization of cingulo-ponto-cerebellar connections in the cat

This study deals with three different aspects of the organization of connections from the cingulate gyrus to the cerebellum. (1) With the use of wheat germ agglutinin-horseradish peroxidase as a retrograde tracer, the distribution of cingulate neurons projecting to the pontine nuclei was studied. Retrogradely labeled cells were found in layer 5 in all parts of the cingulate gyrus. Average densities of cingulo-pontine cells were similar in the different cytoarchitectonic subdivisions, although some density gradients were observed. The projection was found to be remarkably strong. Average densities of corticopontine cells in the cingulate gyrus ranged from 500-700 cells per mm2 cortical surface, and the total number of neurons was in the range of 75,000-105,000 (n = 4). (2) A topographical organization of terminal fields of fibers originating in different parts of the cingulate gyrus was demonstrated with the combined use of anterograde degeneration and anterograde transport of wheat germ agglutinin-horseradish peroxidase. Terminal fibers originating in different zones of the cingulate gyrus were distributed in a patchy mosaic within a narrow band along the ventromedial aspect of the pontine nuclei. (3) We confirm, with the combined use of lesions in the cingulate gyrus and injections of wheat germ agglutinin-horseradish peroxidase in the ventral paraflocculus, that there is considerable overlap between terminal fibers originating in the cingulate gyrus, and cells retrogradely labeled from the ventral paraflocculus. The role of the ventral paraflocculus as a receiver of "limbic" input is discussed.

Statistical analysis of corticopontine neuron distribution in visual areas 17, 18, and 19 of the cat

The spatial organization of visual corticopontine neurons was studied both at a "large scale" (in relation to cortical visual field maps) and at a "small scale" (in relation to cortical modular organization). Large injections of horse-radish peroxidase-wheat germ agglutinin were made in the pontine nuclei. In complete series of sections from parts of areas 17, 18, and 19, the position of each retrogradely labeled neuron was recorded with an x-y plotter connected to the microscope stage. Each cell was thus given a set of x, y, and z coordinates. After alignment of the sections, three-dimensional computer reconstructions of the distribution of the labeled cells were made. With program RPOP (developed by Blackstad and Bjaalie, '88), the reconstructions were studied with different rotations, scaling, etc. In addition, section-independent parts of reconstructions were isolated ("windows") and further analyzed. Curved parts were automatically unfolded for inspection of distribution patterns and determination of cell densities. The spatial distribution of the labeled cells was analyzed within small windows, where density gradients are negligible. We confirm and extend previous demonstrations of a large-scale aggregation of visual corticopontine cells due to density gradients by showing that densities of corticopontine neurons increase linearly as a function of distance from paracentral to lower visual field representations in area 17 (and partly in areas 18 and 19). We demonstrate that density gradients are steeper in area 17 than in area 18. For example, clear-cut differences between the areas in mediolateral density gradients are found. These findings are discussed in relation to the different visual field maps of the areas and the existence of a similar visual field representation in corticopontine projections from different visual areas. The type of small-scale distribution (randomness or non-randomness, aggregation into clusters, bands, etc.) was studied with statistical methods. Such analysis shows that the labeled cells within small zones are non-randomly distributed in all three areas. In most cases, the analysis indicates an aggregated spatial distribution. A possible relationship to the cortical map of direction selectivity is discussed. To our knowledge, this study is the first to combine the use of three-dimensional computer reconstructions of a population of labeled neurons, with subsequent statistical analysis of spatial point (cell distribution) patterns.

MORFOREL, a computer program for two-dimensional analysis of micrographs of biological specimens, with emphasis on immunogold preparations

The program is a tool for accelerating analysis of tissue components (profiles) as seen in micrographs, including electron micrographs with immunoreactive substances labelled with gold particles. Required equipment is a computer with digitizer and printer. From coordinates sampled around the profiles, area, perimeter and form factor are calculated; particles in profiles, when wanted, are counted to obtain particle densities. MORFOREL permits basic statistical calculations on primary data or on composite expressions based on them. Expressions can be saved on disk and retrieved. Primary and calculated data are readily output in a format readable by common commercial packages.