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Yakovlev AG, Taisova AS. Downhill excitation energy flow in reaction centers of purple bacteria Rhodospirillum rubrum G9. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2024; 1865:149499. [PMID: 39069149 DOI: 10.1016/j.bbabio.2024.149499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/24/2024] [Accepted: 07/24/2024] [Indexed: 07/30/2024]
Abstract
Using femtosecond differential spectroscopy, excitation energy transfer in reaction centers (RCs) of the carotenoidless strain of purple bacteria Rhodospirillum rubrum G9 was studied at room temperature. Excitation and probing of the Qy, Qx and Soret absorption bands of the RCs were carried out by pulses with duration of 25-30 fs. Modeling of ΔA (light - dark) kinetics made it possible to estimate the characteristic time of various stages of excitation energy transformation. It is shown that the dynamics of the downhill energy flow in the RCs is determined both by the internal energy conversion Soret→ Qx → Qy in each cofactor and by the energy transfer H* → B* → P* (H - bacteriopheophytin, B - bacteriochlorophyll a, P - bacteriochlorophyll a dimer) between cofactors. The transfer of energy between the upper excited levels (Soret and Qx) of the cofactors accelerates its arrival to the lower exciton level of the P, from where charge separation begins. It turned out that all conversion and energy transfer processes occur within 40-160 fs: the conversion Soret → Qx occurs in 40-50 fs, the conversion Qx → Qy occurs in 100-140 fs, the transfer H* → B* has a time constant of 80-120 fs, and the transfer B* → P* has a time constant of 130-160 fs. The rate of energy transfer between the upper excited levels is close to the rate of transfer between Qy levels.
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Affiliation(s)
- Andrei G Yakovlev
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Leninskie Gory, 119991 Moscow, Russian Federation.
| | - Alexandra S Taisova
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Leninskie Gory, 119991 Moscow, Russian Federation
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Gorbunov MY, Falkowski PG. Using picosecond fluorescence lifetime analysis to determine photosynthesis in the world's oceans. PHOTOSYNTHESIS RESEARCH 2024; 159:253-259. [PMID: 38019308 DOI: 10.1007/s11120-023-01060-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 10/31/2023] [Indexed: 11/30/2023]
Abstract
Phytoplankton in the ocean account for less than 1% of the global photosynthetic biomass, but contribute about 45% of the photosynthetically fixed carbon on Earth. This amazing production/biomass ratio implies a very high photosynthetic efficiency. But, how efficiently is the absorbed light used in marine photosynthesis? The introduction of picosecond and then femtosecond lasers for kinetic measurements in mid 1970s to 90 s was a revolution in basic photosynthesis research that vastly improved our understanding of the energy conversion processes in photosynthetic reactions. Until recently, the use of this technology in the ocean was not feasible due to the complexity of related instrumentation and the lack of picosecond lasers suitable for routine operation in the field. However, recent advances in solid-state laser technology and the development of compact data acquisition electronics led to the application of picosecond fluorescence lifetime analyses in the field. Here, we review the development of operational ultrasensitive picosecond fluorescence instruments to infer photosynthetic energy conversion processes in ocean ecosystems. This analysis revealed that, in spite of the high production/biomass ratio in marine phytoplankton, the photosynthetic energy conversion efficiency is exceptionally low-on average, ca. 50% of its maximum potential, suggesting that most of the contemporary open ocean surface waters are extremely nutrient deficient.
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Affiliation(s)
- Maxim Y Gorbunov
- Environmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
| | - Paul G Falkowski
- Environmental Biophysics and Molecular Ecology Program, Department of Marine and Coastal Sciences, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
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Vasilieva LG, Kaminskaya OP, Yakovlev AG, Shkuropatov AY, Semenov AY, Nadtochenko VA, Krasnovsky AA, Parson WW, Allakhverdiev SI, Govindjee G. In memory of Vladimir Anatolievich Shuvalov (1943-2022): an outstanding biophysicist. PHOTOSYNTHESIS RESEARCH 2022; 154:207-223. [PMID: 36070062 DOI: 10.1007/s11120-022-00932-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
We present here a tribute to one of the foremost biophysicists of our time, Vladimir Anatolievich Shuvalov, who made important contributions in bioenergetics, especially on the primary steps of conversion of light energy into charge-separated states in both anoxygenic and oxygenic photosynthesis. For this, he and his research team exploited pico- and femtosecond transient absorption spectroscopy, photodichroism & circular dichroism spectroscopy, light-induced FTIR (Fourier-transform infrared) spectroscopy, and hole-burning spectroscopy. We remember him for his outstanding leadership and for being a wonderful mentor to many scientists in this area. Reminiscences by many [Suleyman Allakhverdiev (Russia); Robert Blankenship (USA); Richard Cogdell (UK); Arvi Freiberg (Estonia); Govindjee Govindjee (USA); Alexander Krasnovsky, jr, (Russia); William Parson (USA); Andrei Razjivin (Russia); Jian- Ren Shen (Japan); Sergei Shuvalov (Russia); Lyudmilla Vasilieva (Russia); and Andrei Yakovlev (Russia)] have included not only his wonderful personal character, but his outstanding scientific research.
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Affiliation(s)
- Lyudmila G Vasilieva
- Institute of Basic Biological Problems of the Russian Academy of Sciences, Pushchino Moscow Region, Pushchino, Russian Federation
| | - Olga P Kaminskaya
- Institute of Basic Biological Problems of the Russian Academy of Sciences, Pushchino Moscow Region, Pushchino, Russian Federation
| | - Andrei G Yakovlev
- A.N. Belozersky Institute of Physical-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow, 119992, Russian Federation
| | - Anatoliy Ya Shkuropatov
- Institute of Basic Biological Problems of the Russian Academy of Sciences, Pushchino Moscow Region, Pushchino, Russian Federation
| | - Alexey Yu Semenov
- A.N. Belozersky Institute of Physical-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 1, Moscow, 119992, Russian Federation
| | - Victor A Nadtochenko
- N.N. Semenov Federal Research Center for Chemical Physics, Russian Academy of Sciences, Kosygina St. 4, Moscow, 117977, Russian Federation
| | - Alexander A Krasnovsky
- Bach Institute of Biochemistry, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow, 119071, Russian Federation
| | - William W Parson
- Department of Biochemistry, University of Washington, Seattle, WA, 98195, USA.
| | - Suleyman I Allakhverdiev
- Institute of Basic Biological Problems of the Russian Academy of Sciences, Pushchino Moscow Region, Pushchino, Russian Federation.
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Moscow, Russian Federation.
| | - Govindjee Govindjee
- Department of Biochemistry, Department of Plant Biology and Center of Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, 289 Morrill Hall, 505 South Goodwin Avenue, Urbana, IL, 61801, USA.
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Mathis P, Sage E, Byrdin M. Pushing the limits of flash photolysis to unravel the secrets of biological electron and proton transfer. Photochem Photobiol Sci 2022; 21:1533-1544. [DOI: 10.1007/s43630-021-00134-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/05/2021] [Indexed: 11/25/2022]
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Razjivin AP, Kozlovsky VS. Unique features of the 'photo-energetics' of purple bacteria: a critical survey by the late Aleksandr Yuryevich Borisov (1930-2019). PHOTOSYNTHESIS RESEARCH 2020; 146:17-24. [PMID: 31655967 DOI: 10.1007/s11120-019-00683-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Accepted: 10/04/2019] [Indexed: 06/10/2023]
Abstract
We provide here an edited version of the "Farewell discussion" by the late Aleksandr (Alex) Yuryevich (Yu) Borisov (1930-2019) on several aspects related to the excitation energy transfer in photosynthetic bacteria. It is preceded by a prolog giving the events that led to our decision to publish it. Further, we include here a few photographs to give a personal glimpse of this unique biophysicist of our time. In addition, we provide here a reminiscence, by Andrei B. Rubin, on the scientific beginnings of Borisov. This article follows a Tribute to Borisov by Semenov et al. (2019, Photosynthesis Research, this issue).
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Affiliation(s)
- Andrei P Razjivin
- Department of Photosynthesis, A.N.Belozersky Research Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
| | - Vladimir S Kozlovsky
- Department of Photosynthesis, A.N.Belozersky Research Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, 119991, Russia
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Klevanik AV. On the Sum of Exponentials that Form Molecular Fluorescence Decay Kinetics. Biophysics (Nagoya-shi) 2018. [DOI: 10.1134/s0006350918060167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Khatypov RA, Khristin AM, Fufina TY, Shuvalov VA. An Alternative Pathway of Light-Induced Transmembrane Electron Transfer in Photosynthetic Reaction Centers of Rhodobacter sphaeroides. BIOCHEMISTRY (MOSCOW) 2017; 82:692-697. [PMID: 28601078 DOI: 10.1134/s0006297917060050] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In the absorption spectrum of Rhodobacter sphaeroides reaction centers, a minor absorption band was found with a maximum at 1053 nm. The amplitude of this band is ~10,000 times less and its half-width is comparable to that of the long-wavelength absorption band of the primary electron donor P870. When the primary electron donor is excited by femtosecond light pulses at 870 nm, the absorption band at 1053 nm is increased manifold during the earliest stages of charge separation. The growth of this absorption band in difference absorption spectra precedes the appearance of stimulated emission at 935 nm and the appearance of the absorption band of anion-radical BA- at 1020 nm, reported earlier by several researchers. When reaction centers are illuminated with 1064 nm light, the absorption spectrum undergoes changes indicating reduction of the primary electron acceptor QA, with the primary electron donor P870 remaining neutral. These photoinduced absorption changes reflect the formation of the long-lived radical state PBAHAQA-.
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Affiliation(s)
- R A Khatypov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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Paschenko VZ, Churin AA, Gorokhov VV, Grishanova NP, Korvatovskii BN, Maksimov EG, Mamedov MD. The efficiency of non-photochemical fluorescence quenching by cation radicals in photosystem II reaction centers. PHOTOSYNTHESIS RESEARCH 2016; 130:325-333. [PMID: 27075994 DOI: 10.1007/s11120-016-0260-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Accepted: 04/04/2016] [Indexed: 06/05/2023]
Abstract
In a direct experiment, the rate constants of photochemical k p and non-photochemical k p+ quenching of the chlorophyll fluorescence have been determined in spinach photosystem II (PS II) membrane fragments, oxygen-evolving PS II core, as well as manganese-depleted PS II particles using pulse fluorimetry. In the dark-adapted reaction center(s) (RC), the fluorescence decay kinetics of the antenna were measured at low-intensity picosecond pulsed excitation. To create a "closed" P680+Q A- state, RCs were illuminated by high-intensity actinic flash 8 ns prior to the measuring flash. The obtained data were approximated by the sum of two decaying exponents. It was found that the antennae fluorescence quenching efficiency by the oxidized photoactive pigment of RC P680+ was about 1.5 times higher than that of the neutral P680 state. These results were confirmed by a single-photon counting technique, which allowed to resolve the additional slow component of the fluorescence decay. Slow component was assigned to the charge recombination of P680+Pheo- in PS II RC. Thus, for the first time, the ratio k p+ /k p ≅ 1.5 was found directly. The mechanism of the higher efficiency of non-photochemical quenching comparing to photochemical quenching is discussed.
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Affiliation(s)
- V Z Paschenko
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234.
| | - A A Churin
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234
| | - V V Gorokhov
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234
| | - N P Grishanova
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234
| | - B N Korvatovskii
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234
| | - E G Maksimov
- Biophysical Department, Faculty of Biology, M.V.Lomonosov Moscow State University, Leninskye Gory 1, Build. 12, Moscow, Russia, 119234
| | - M D Mamedov
- A.N.Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskye Gory 1, Build. 40, Moscow, Russia, 119992
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Mamedov M, Nadtochenko V, Semenov A. Primary electron transfer processes in photosynthetic reaction centers from oxygenic organisms. PHOTOSYNTHESIS RESEARCH 2015; 125:51-63. [PMID: 25648636 DOI: 10.1007/s11120-015-0088-y] [Citation(s) in RCA: 74] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Accepted: 01/12/2015] [Indexed: 05/22/2023]
Abstract
This minireview is written in honor of Vladimir A. Shuvalov, a pioneer in the area of primary photochemistry of both oxygenic and anoxygenic photosyntheses (See a News Report: Allakhverdiev et al. 2014). In the present paper, we describe the current state of the formation of the primary and secondary ion-radical pairs within photosystems (PS) II and I in oxygenic organisms. Spectral-kinetic studies of primary events in PS II and PS I, upon excitation by ~20 fs laser pulses, are now available and reviewed here; for PS II, excitation was centered at 710 nm, and for PS I, it was at 720 nm. In PS I, conditions were chosen to maximally increase the relative contribution of the direct excitation of the reaction center (RC) in order to separate the kinetics of the primary steps of charge separation in the RC from that of the excitation energy transfer in the antenna. Our results suggest that the sequence of the primary electron transfer reactions is P680 → ChlD1 → PheD1 → QA (PS II) and P700 → A 0A/A 0B → A 1A/A 1B (PS I). However, alternate routes of charge separation in PS II, under different excitation conditions, are not ruled out.
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Affiliation(s)
- Mahir Mamedov
- A.N. Belozersky Institute of Physical-Chemical Biology, Moscow State University, 119991, Moscow, Russia,
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Shuvalov VA. My journey in photosynthesis research. PHOTOSYNTHESIS RESEARCH 2015; 125:5-8. [PMID: 25645566 DOI: 10.1007/s11120-015-0077-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2014] [Accepted: 01/05/2015] [Indexed: 06/04/2023]
Abstract
At the invitation of Suleyman I. Allakhverdiev, I provide here a brief autobiography for this special issue that recognizes my service and research for the larger international community of photosynthesis research.
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Affiliation(s)
- Vladimir A Shuvalov
- Institute of Basic Biological Problems, RAS, 142290, Pushchino, Moscow Region, Russia,
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Allakhverdiev SI, Tomo T. International conference on "Photosynthesis Research for Sustainability-2014: in honor of Vladimir A. Shuvalov", held on June 2-7, 2014, in Pushchino, Russia. PHOTOSYNTHESIS RESEARCH 2014; 122:337-347. [PMID: 25214184 DOI: 10.1007/s11120-014-0032-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
In this article, we provide a News Report on an international conference "Photosynthesis Research for Sustainability-2014" that was held in honor of Vladimir A. Shuvalov at the Biological Research Center of the Russian Academy of Sciences, in Pushchino, Russia, during June 2-7, 2014 (http://photosynthesis2014.cellreg.org/). We begin this report with a short description of Vladimir A. Shuvalov, the honored scientist. We then provide some information on the conference, and the program. A special feature of this conference was awards given to nine young investigators; they are recognized in this Report. We have also included several photographs to show the pleasant ambiance at this conference. We invite the readers to the next two conferences on ''Photosynthesis Research for Sustainability-2015: the first one to be held in Baku in May or June, 2015, and the second one, which will honor George C. Papageorgiou, will be held in Greece (in Colymbari, near Chania in Crete) during September 21-26, 2015. Information will be posted at: http://photosynthesis2015.cellreg.org/.
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Affiliation(s)
- Suleyman I Allakhverdiev
- Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya Street 35, Moscow, 127276, Russia,
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Borisov AY. Efficiency of photochemical stages of photosynthesis in purple bacteria (a critical survey). BIOCHEMISTRY. BIOKHIMIIA 2014; 79:227-234. [PMID: 24821449 DOI: 10.1134/s0006297914030080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Based on currently available data, the energy transfer efficiency in the successive photophysical and photochemical stages has been analyzed for purple bacteria. This analysis covers the stages starting from migration of the light-induced electronic excitations from the bulk antenna pigments to the reaction centers up to irreversible stage of the electron transport along the transmembrane chain of cofactors-carriers. Some natural factors are revealed that significantly increase the rates of efficient processes in these stages. The influence on their efficiency by the "bottleneck" in the energy migration chain is established. The overall quantum yield of photosynthesis in these stages is determined.
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Affiliation(s)
- A Yu Borisov
- Lomonosov Moscow State University, Belozersky Institute of Physico-Chemical Biology, Moscow, 119992, Russia.
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Moser CC, Alegria G, Gunner M, Leslie Dutton P. Interpretation of the Electric Field Sensitivity of the Primary Charge Separation in Photosynthetic Reaction Centers. Isr J Chem 2013. [DOI: 10.1002/ijch.198800023] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Forman A, Davis MS, Fujita I, Hanson LK, Smith KM, Fajer J. Mechanisms of Energy Transduction in Plant Photosynthesis: ESR, ENDOR and MOs of the Primary Acceptors. Isr J Chem 2013. [DOI: 10.1002/ijch.198100049] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Yakovlev AG, Shuvalov VA. Formation of Bacteriochlorophyll Anion Band at 1020 nm Produced by Nuclear Wavepacket Motion in Bacterial Reaction Centers. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200000097] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Pishchalnikov RY, Pershin SM, Bunkin AF. Quantum differences of ortho/para H2O spin-isomers as a factor of the femtosecond charge separation kinetics modulation in the reaction center of purple bacteria. Biophysics (Nagoya-shi) 2013. [DOI: 10.1134/s0006350912060140] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Yakovlev AG, Khmelnitsky AY, Shuvalov VA. Femtosecond charge separation in dry films of reaction centers of Rhodobacter sphaeroides and Chloroflexus aurantiacus. BIOCHEMISTRY (MOSCOW) 2012; 77:444-55. [DOI: 10.1134/s0006297912050045] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Conductivity by Electron Pairs. Chem Phys 2012. [DOI: 10.1201/b11524-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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YAKOVLEV ANDREIG, SHKUROPATOVA TATIANAA, VASILIEVA LYUDMILAG, YA. SHKUROPATOV ANATOLI, SHUVALOV VLADIMIRA. WAVE PACKET MOTIONS COUPLED TO ELECTRON TRANSFER IN REACTION CENTERS OF CHLOROFLEXUS AURANTIACUS. J Bioinform Comput Biol 2012; 6:643-66. [DOI: 10.1142/s0219720008003680] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2007] [Revised: 12/03/2007] [Accepted: 01/04/2008] [Indexed: 11/18/2022]
Abstract
Transient absorption difference spectroscopy with ~20 femtosecond (fs) resolution was applied to study the time and spectral evolution of low-temperature (90 K) absorbance changes in isolated reaction centers (RCs) of Chloroflexus (C.) aurantiacus. In RCs, the composition of the B-branch chromophores is different with respect to that of purple bacterial RCs by occupying the BB binding site of accessory bacteriochlorophyll by bacteriopheophytin molecule (ΦB). It was found that the nuclear wave packet motion induced on the potential energy surface of the excited state of the primary electron donor P* by ~20 fs excitation leads to a coherent formation of the states [Formula: see text] and [Formula: see text] (BA is a bacteriochlorophyll monomer in the A-branch of cofactors). The processes were studied by measuring coherent oscillations in kinetics of the absorbance changes at 900 nm and 940 nm (P* stimulated emission), at 750 nm and 785 nm (ΦB absorption bands), and at 1,020–1028 nm ([Formula: see text] absorption band). In RCs, the immediate bleaching of the P band at 880 nm and the appearance of the stimulated wave packet emission at 900 nm were accompanied (with a small delay of 10–20 fs) by electron transfer from P* to the B-branch with bleaching of the ΦB absorption band at 785 nm due to [Formula: see text] formation. These data are consistent with recent measurements for the mutant HM182L Rb. sphaeroides RCs (Yakovlev et al., Biochim Biophys Acta1757:369–379, 2006). Only at a delay of 120 fs was the electron transfer from P* to the A-branch observed with a development of the [Formula: see text] absorption band at 1028 nm. This development was in phase with the appearance of the P* stimulated emission at 940 nm. The data on the A-branch electron transfer in C. aurantiacus RCs are consistent with those observed in native RCs of Rb. sphaeroides. The mechanism of charge separation in RCs with the modified B-branch pigment composition is discussed in terms of coupling between the nuclear wave packet motion and electron transfer from P* to ΦB and BA primary acceptors in the B-branch and A-branch, respectively.
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Affiliation(s)
- ANDREI G. YAKOVLEV
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119991, Russian Federation
| | - TATIANA A. SHKUROPATOVA
- Department of Biophysics, Huygens Laboratory, Leiden University, P.O. Box 9504, 2300 RA Leiden, The Netherlands
| | - LYUDMILA G. VASILIEVA
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russian Federation
| | - ANATOLI YA. SHKUROPATOV
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russian Federation
| | - VLADIMIR A. SHUVALOV
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119991, Russian Federation
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russian Federation
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Khatypov RA, Khmelnitskiy AY, Khristin AM, Fufina TY, Vasilieva LG, Shuvalov VA. Primary charge separation within P870* in wild type and heterodimer mutants in femtosecond time domain. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1817:1392-8. [PMID: 22209778 DOI: 10.1016/j.bbabio.2011.12.007] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Revised: 12/09/2011] [Accepted: 12/14/2011] [Indexed: 10/14/2022]
Abstract
Primary charge separation dynamics in the reaction center (RC) of purple bacterium Rhodobacter sphaeroides and its P870 heterodimer mutants have been studied using femtosecond time-resolved spectroscopy with 20 and 40fs excitation at 870nm at 293K. Absorbance increase in the 1060-1130nm region that is presumably attributed to P(A)(δ+) cation radical molecule as a part of mixed state with a charge transfer character P*(P(A)(δ+)P(B)(δ-)) was found. This state appears at 120-180fs time delay in the wild type RC and even faster in H(L173)L and H(M202)L heterodimer mutants and precedes electron transfer (ET) to B(A) bacteriochlorophyll with absorption band at 1020nm in WT. The formation of the P(A)(δ+)B(A)(δ-) state is a result of the electron transfer from P*(P(A)(δ+)P(B)(δ-)) to the primary electron acceptor B(A) (still mixed with P*) with the apparent time delay of ~1.1ps. Next step of ET is accompanied by the 3-ps appearance of bacteriopheophytin a(-) (H(A)(-)) band at 960nm. The study of the wave packet formation upon 20-fs illumination has shown that the vibration energy of the wave packet promotes reversible overcoming of an energy barrier between two potential energy surfaces P* and P*(P(A)(δ+)B(A)(δ-)) at ~500fs. For longer excitation pulses (40fs) this promotion is absent and tunneling through an energy barrier takes about 3ps. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.
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Affiliation(s)
- R A Khatypov
- Russian Academy of Sciences, Moscow, Russian Federation
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Klevanik AV. Temperature independence of the primary electron transfer reaction rate constants in photosynthetic bacterial reaction centers. DOKL BIOCHEM BIOPHYS 2011; 440:234-8. [PMID: 22095128 DOI: 10.1134/s1607672911050127] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2011] [Indexed: 11/23/2022]
Affiliation(s)
- A V Klevanik
- Russian Academy of Sciences, ul. Institutskaya 2, Moscow oblast, Russia
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22
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Yakovlev AG, Vasilieva LG, Khmelnitskaya TI, Shkuropatova VA, Shkuropatov AY, Shuvalov VA. Primary electron transfer in reaction centers of YM210L and YM210L/HL168L mutants of Rhodobacter sphaeroides. BIOCHEMISTRY. BIOKHIMIIA 2010; 75:832-40. [PMID: 20673206 DOI: 10.1134/s0006297910070047] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The role of tyrosine M210 in charge separation and stabilization of separated charges was studied by analyzing of the femtosecond oscillations in the kinetics of decay of stimulated emission from P* and of a population of the primary charge separated state P(+)B(A)(-) in YM210L and YM210L/HL168L mutant reaction centers (RCs) of Rhodobacter sphaeroides in comparison with those in native Rba. sphaeroides RCs. In the mutant RCs, TyrM210 was replaced by Leu. The HL168L mutation placed the redox potential of the P(+)/P pair 123 mV below that of native RCs, thus creating a theoretical possibility of P(+)B(A)(-) stabilization. Kinetics of P* decay at 940 nm of both mutants show a significant slowing of the primary charge separation reaction in comparison with native RCs. Distinct damped oscillations in these kinetics with main frequency bands in the range of 90-150 cm(-1) reflect mostly nuclear motions inside the dimer P. Formation of a very small absorption band of B(A)(-) at 1020 nm is registered in RCs of both mutants. The formation of the B(A)(-) band is accompanied by damped oscillations with main frequencies from ~10 to ~150 cm(-1). Only a partial stabilization of the P(+)B(A)(-) state is seen in the YM210L/HL168L mutant in the form of a small non-oscillating background of the 1020-nm kinetics. A similar charge stabilization is absent in the YM210L mutant. A model of oscillatory reorientation of the OH-group of TyrM210 in the electric fields of P(+) and B(A)(-) is proposed to explain rapid stabilization of the P(+)B(A)(-) state in native RCs. Small oscillatory components at ~330-380 cm(-1) in the 1020-nm kinetics of native RCs are assumed to reflect this reorientation. We conclude that the absence of TyrM210 probably cannot be compensated by lowering of the P(+)B(A)(-) free energy that is expected for the double YM210L/HL168L mutant. An oscillatory motion of the HOH55 water molecule under the influence of P(+) and B(A)(-) is assumed to be another potential contributor to the mechanism of P(+)B(A)(-) stabilization.
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Affiliation(s)
- A G Yakovlev
- Department of Photobiophysics, Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Russia.
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Trissl HW. Spatial correlation between primary redox components in reaction centers of Rhodopseudomonas sphaeroides measured by two electrical methods in the nanosecond range. Proc Natl Acad Sci U S A 2010; 80:7173-7. [PMID: 16593393 PMCID: PMC390016 DOI: 10.1073/pnas.80.23.7173] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Relative distances between the the primary donor P, the intermediary pheophytin acceptor H, and the iron-quinone acceptor Q of bacterial reaction centers were determined by recording laser flash-induced photovoltages in two experimental systems with nanosecond time resolution. In one system a suspension of chromatophores was subjected to a light gradient and in the other system chromatophores were spread at a heptane/water interface. The 10-ns back reaction occurring in reaction centers with reduced Q could be time resolved. The initial photovoltage amplitude under conditions in which the charge separation proceeded up to the state [P(+)H(-)] was about (2/3) of that when it proceeded up to the state [P(+)HQ(-)]. If the amplitude of the photovoltage is considered to be proportional to the spatial displacement of charges, this result means that pheophytin lies closer to Q than to P.
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Affiliation(s)
- H W Trissl
- Universität Osnabrück, Schwerpunkt Biophysik, Albrechtstrasse 28, D-4500 Osnabrück, Federal Republic of Germany
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24
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Martin JL, Breton J, Hoff AJ, Migus A, Antonetti A. Femtosecond spectroscopy of electron transfer in the reaction center of the photosynthetic bacterium Rhodopseudomonas sphaeroides R-26: Direct electron transfer from the dimeric bacteriochlorophyll primary donor to the bacteriopheophytin acceptor with a time constant of 2.8 +/- 0.2 psec. Proc Natl Acad Sci U S A 2010; 83:957-61. [PMID: 16593659 PMCID: PMC322989 DOI: 10.1073/pnas.83.4.957] [Citation(s) in RCA: 308] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The primary light-induced charge separation in reaction centers from Rhodopseudomonas sphaeroides R-26 has been investigated after excitation with laser pulses of 150 fsec duration within the longwave absorption band of the primary donor at 850 nm. An excited state of the primary donor, characterized by a broad absorption spectrum extending over the whole spectral range investigated (545-1240 nm), appeared within 100 fsec and gave rise to stimulated emission in the 870- to 1000-nm region with a 2.8-psec lifetime. The photooxidation of the primary donor, as measured at 1240 nm, and the photoreduction of the bacteriopheophytin acceptor, monitored at 545 nm and 675 nm, have been found to proceed simultaneously with a time constant of 2.8 +/- 0.2 psec. Kinetics of absorbance changes at other probe wavelengths gave no indication that an accessory bacteriochlorophyll is involved as a transient electron acceptor.
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Affiliation(s)
- J L Martin
- Laboratoire d'Optique Appliquée, Institut National de la Santé et de la Recherche Médicale U275-Ecole Polytechnique-Ecole Nationale Supérieure de Techniques Avancées, 91128 Palaiseau Cedex, France
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25
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Shuvalov VA, Duysens LN. Primary electron transfer reactions in modified reaction centers from Rhodopseudomonas sphaeroides. Proc Natl Acad Sci U S A 2010; 83:1690-4. [PMID: 16593664 PMCID: PMC323149 DOI: 10.1073/pnas.83.6.1690] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Absorption spectra were measured by means of an optical multichannel analyzer in Rhodopseudomonas sphaeroides R-26 reaction centers (RCs) modified by treatment with NaBH(4) at various times (>/=1 ps) after the onset of a short excitation flash at 880 nm. Most of these RCs (75-95%) have only one "monomeric" bacteriochlorophyll-800 (B(1)) molecule and are as active as the original RCs. The duration of the excitation and measuring pulses was approximately 33 ps. If the center of the excitation pulse preceded the center of the measuring pulse by 36-40 ps, the formation of a state P(E) (early state), which is converted to the state P(F) (P(+) bacteriopheophytin(-)) in 4 +/- 1 ps (1/e time), was observed. Also the kinetics and the spectrum of the stimulated emission (reflecting the kinetics and the emission spectrum of the excited state P(*)) were determined. The difference spectrum of the state P(E) approximately equals the sum of the spectra of the states P(*) ( approximately 65%) and (1)[P(+)B(1) (-)] ( approximately 35%). This indicates that B(1) (-) is an intermediate in the electron transfer from P(*) to bacteriopheophytin, H(1), transferring this electron with a rate constant of (4 x 0.35 ps)(-1) = 7 x 10(11) s(-1).
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Affiliation(s)
- V A Shuvalov
- Department of Biophysics, Huygens Laboratory of the State University, P. O. Box 9504, 2300 RA Leiden, The Netherlands
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26
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Shuvalov VA, Parson WW. Energies and kinetics of radical pairs involving bacteriochlorophyll and bacteriopheophytin in bacterial reaction centers. Proc Natl Acad Sci U S A 2010; 78:957-61. [PMID: 16592980 PMCID: PMC319924 DOI: 10.1073/pnas.78.2.957] [Citation(s) in RCA: 131] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Absorbance changes reflecting the formation of a transient radical-pair state, P(F), were measured in reaction centers from Rhodopseudomonas sphaeroides under conditions that blocked electron transfer to a later carrier (a quinone, Q). The temperature dependence of the absorbance changes suggests that P(F) is an equilibrium mixture of two states, which appear to be mainly (1)[P([unk])B([unk])] and (1)[P([unk])H([unk])]. P is a bacteriochlorophyll dimer, B is a bacteriochlorophyll absorbing at 800 nm, and H is a bacteriopheophytin. In the presence of Q([unk]), the energy of (1)[P([unk])B([unk])] is about 0.025 eV above that of (1)[P([unk])H([unk])], (1)[P([unk])H([unk])] can decay to a triplet state, P(R), which also is an equilibrium mixture of two states, separated by about 0.03 eV. The lower of these appears to be mainly a locally excited triplet state of P, (3)P; the upper state contains a major contribution from a triplet charge-transfer state, (3)[P([unk])B([unk])]. The temperature dependence of delayed fluorescence from P(R) indicates that (3)P lies 0.40 eV below the excited singlet state, P(*), which is about 0.05 eV above (1)[P([unk])H([unk])]. The (1,3)[P([unk])B([unk])] charge-transfer states thus appear to interact with the locally excited states of P and B to give singlet and triplet states that are separated in energy by about 0.35 eV. This is 10(6) times larger than the splitting between (1)[P([unk])H([unk])] and (3)[P([unk])H([unk])] and implies strong orbital overlap between P([unk]) and B([unk]). This is consistent with recent picosecond studies which suggest that electron transfer from P(*) to B occurs within 1 ps and is followed in 4 to 10 ps by electron transfer from B([unk]) to H.
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Affiliation(s)
- V A Shuvalov
- Department of Biochemistry, University of Washington, Seattle, Washington 98195
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27
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Friesner R, Wertheimer R. Model for primary charge separation in reaction centers of photosynthetic bacteria. Proc Natl Acad Sci U S A 2010; 79:2138-42. [PMID: 16593176 PMCID: PMC346141 DOI: 10.1073/pnas.79.6.2138] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We present model calculations of the dynamics of primary electron transfer (ET) in reaction centers of photosynthetic bacteria. We obtain half times of [unk]1 ps and approximately 5 ps for the first two ET processes, in excellent agreement with experimental observations. Our model is based on (i) a theoretical framework capable of describing ET in the presence of strong electronic interstate resonance coupling and (ii) energy parameters extracted from recent experimental data and molecular orbital calculations. Our analysis suggests that (i) strong electronic interstate mixing is crucial to the rapidity and efficiency of irreversible ET; (ii) possibly five rather than three electronic states participate in the transient ET prior to the reduction in vivo of the quinone complex; and (iii) conventional ET theories, which rely on weak electronic interstate mixing, are unfit for describing ET in reaction centers of photosynthetic bacteria.
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Affiliation(s)
- R Friesner
- Department of Chemistry and Center of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
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28
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Haberkorn R, Michel-Beyerle ME, Marcus RA. On spin-exchange and electron-transfer rates in bacterial photosynthesis. Proc Natl Acad Sci U S A 2010; 76:4185-8. [PMID: 16592700 PMCID: PMC411536 DOI: 10.1073/pnas.76.9.4185] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A discrepancy is explored regarding the spin exchange integral estimated from magnetic field effects on recombination of the bacteriochlorophyll dimer cation (Bchl)(2)+ and the bacteriopheophytin anion Bph(-) and the measured electron transfer rate between Bph and electronically excited (Bchl)(2). In one explanation considered here there are two sites for the electron or for the hole, with a hopping between sites.
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Affiliation(s)
- R Haberkorn
- Institut für Physikalische und Theoretische Chemie, Technische Universität Munchen, D-8046 Garching, West Germany
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29
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Tiede DM, Choquet Y, Breton J. Geometry for the Primary Electron Donor and the Bacteriopheophytin Acceptor in Rhodopseudomonas viridis Photosynthetic Reaction Centers. Biophys J 2010; 47:443-7. [PMID: 19431588 DOI: 10.1016/s0006-3495(85)83936-9] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
The tetrapyrrole electron donors and acceptors (bacteriochlorophyll, BCh; bacteriopheophytin, BPh) within the bacterial photosynthetic reaction center (RC) are arranged with a specific geometry that permits rapid (picosecond time scale) electron tunneling to occur between them. Here we have measured the angle between the molecular planes of the bacteriochlorophyll dimer (primary donor), B(2), and the acceptor bacteriopheophytin, H, by analyzing the dichroism of the absorption change associated with H reduction, formed by photoselection with RCs of Rhodopseudomonas viridis. This angle between molecular planes is found to be 60 degrees +/- 2. This means that the ultrafast electron tunneling must occur between donors and acceptors that are fixed by the protein to have a noncoplanar alignment. Nearly perpendicular alignments have been determined for other electron tunneling complexes involving RCs. These geometries can be contrasted with models proposed for heme-heme electron transfer complexes, which have emphasized that mutually parallel orientations should permit the most kinetically facile transfers.
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30
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Khatypov RA, Yu Khmelnitskiy A, Khristin AM, Shuvalov VA. Femtosecond absorption band formation at 1080 and 1020 nm as an indication of charge-separated states P(A)delta+ P7(B)delta- and p+ B(A)- in photosynthetic reaction centers of the purple bacterium Rhodobacter sphaeroides. DOKL BIOCHEM BIOPHYS 2010; 430:24-8. [PMID: 20380157 DOI: 10.1134/s1607672910010084] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- R A Khatypov
- Institute of Fundamental Problems in Biology, Russian Academy of Sciences, ul. Institutskaya 2, Pushchino, Moscow oblast, 142290 Russia
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31
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Role of quantum chemical calculations in molecular biophysics with a historical perspective. Theor Chem Acc 2009. [DOI: 10.1007/s00214-009-0622-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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32
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Leonova MM, Vasilieva LG, Khatypov RA, Boichenko VA, Shuvalov VA. Properties of mutant reaction centers of Rhodobacter sphaeroides with substitutions of histidine L153, the axial Mg2+ ligand of bacteriochlorophyll BA. BIOCHEMISTRY (MOSCOW) 2009; 74:452-60. [DOI: 10.1134/s0006297909040142] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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33
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Khatypov RA, Khmelnitskiy AY, Leonova MM, Vasilieva LG, Shuvalov VA. Primary light-energy conversion in tetrameric chlorophyll structure of photosystem II and bacterial reaction centers: I. A review. PHOTOSYNTHESIS RESEARCH 2008; 98:81-93. [PMID: 18853274 DOI: 10.1007/s11120-008-9370-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2008] [Accepted: 09/15/2008] [Indexed: 05/26/2023]
Abstract
The purpose of the review is to show that the tetrameric (bacterio)chlorophyll ((B)Chl) structures in reaction centers of photosystem II (PSII) of green plants and in bacterial reaction centers (BRCs) are similar and play a key role in the primary charge separation. The Stark effect measurements on PSII reaction centers have revealed an increased dipole moment for the transition at approximately 730 nm (Frese et al., Biochemistry 42:9205-9213, 2003). It was found (Heber and Shuvalov, Photosynth Res 84:84-91, 2005) that two fluorescent bands at 685 and 720 nm are observed in different organisms. These two forms are registered in the action spectrum of Q(A) photoreduction. Similar results were obtained in core complexes of PSII at low temperature (Hughes et al., Biochim Biophys Acta 1757: 841-851, 2006). In all cases the far-red absorption and emission can be interpreted as indication of the state with charge transfer character in which the chlorophyll monomer plays a role of an electron donor. The role of bacteriochlorophyll monomers (B(A) and B(B)) in BRCs can be revealed by different mutations of axial ligand for Mg central atoms. RCs with substitution of histidine L153 by tyrosine or leucine and of histidine M182 by leucine (double mutant) are not stable in isolated state. They were studied in antennaless membrane by different kinds of spectroscopy including one with femtosecond time resolution. It was found that the single mutation (L153HY) was accompanied by disappearance of B(A) molecule absorption near 802 nm and by 14-fold decrease of photochemical activity measured with ms time resolution. The lifetime of P(870)* increased up to approximately 200 ps in agreement with very low rate of the electron transfer to A-branch. In the double mutant L153HY + M182HL, the B(A) appears to be lost and B(B) is replaced by bacteriopheophytin Phi(B) with the absence of any absorption near 800 nm. Femtosecond measurements have revealed the electron transfer to B-branch with a time constant of approximately 2 ps. These results are discussed in terms of obligatory role of B(A) and Phi(B) molecules located near P for efficient electron transfer from P*.
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Affiliation(s)
- Ravil A Khatypov
- Institute of Basic Biological Problems, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
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34
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Ivashin N, Larsson S. Trapped Water Molecule in the Charge Separation of a Bacterial Reaction Center. J Phys Chem B 2008; 112:12124-33. [DOI: 10.1021/jp711924f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Nikolai Ivashin
- Institute of Physics, National Academy of Sciences, Nezalezhnasti Avenue 70, 220072 Minsk, Belarus, Department of Physical Chemistry, Chalmers University of Technology, S-41296, Göteborg, Sweden
| | - Sven Larsson
- Institute of Physics, National Academy of Sciences, Nezalezhnasti Avenue 70, 220072 Minsk, Belarus, Department of Physical Chemistry, Chalmers University of Technology, S-41296, Göteborg, Sweden
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35
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Borisov AY, Trushkin NA. A new methodical approach to determine the quantum yield of the conversion of electronic excitation in the reaction centers of purple bacteria. Biophysics (Nagoya-shi) 2008. [DOI: 10.1134/s0006350908030068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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36
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37
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Yakovlev AG, Shkuropatova TA, Vasilieva LG, Shkuropatov AY, Gast P, Shuvalov VA. Vibrational coherence in bacterial reaction centers with genetically modified B-branch pigment composition. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2006; 1757:369-79. [PMID: 16829225 DOI: 10.1016/j.bbabio.2006.05.025] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2005] [Revised: 05/10/2006] [Accepted: 05/11/2006] [Indexed: 11/25/2022]
Abstract
Femtosecond absorption difference spectroscopy was applied to study the time and spectral evolution of low-temperature (90 K) absorbance changes in isolated reaction centers (RCs) of the HM182L mutant of Rhodobacter (Rb.) sphaeroides. In this mutant, the composition of the B-branch RC cofactors is modified with respect to that of wild-type RCs by replacing the photochemically inactive BB accessory bacteriochlorophyll (BChl) by a photoreducible bacteriopheophytin molecule (referred to as PhiB). We have examined vibrational coherence within the first 400 fs after excitation of the primary electron donor P with 20-fs pulses at 870 nm by studying the kinetics of absorbance changes at 785 nm (PhiB absorption band), 940 nm (P*-stimulated emission), and 1020 nm (BA- absorption band). The results of the femtosecond measurements are compared with those recently reported for native Rb. sphaeroides R-26 RCs containing an intact BB BChl. At delay times longer than approximately 50 fs (maximum at 120 fs), the mutant RCs exhibit a pronounced BChl radical anion (BA-) absorption band at 1020 nm, which is similar to that observed for Rb. sphaeroides R-26 RCs and represents the formation of the intermediate charge-separated state P+ BA-. Femtosecond oscillations are revealed in the kinetics of the absorption development at 1020 nm and of decay of the P*-stimulated emission at 940 nm, with the oscillatory components of both kinetics displaying a generally synchronous behavior. These data are interpreted in terms of coupling of wave packet-like nuclear motions on the potential energy surface of the P* excited state to the primary electron-transfer reaction P*-->P+ BA- in the A-branch of the RC cofactors. At very early delay times (up to 80 fs), the mutant RCs exhibit a weak absorption decrease around 785 nm that is not observed for Rb. sphaeroides R-26 RCs and can be assigned to a transient bleaching of the Qy ground-state absorption band of the PhiB molecule. In the range of 740-795 nm, encompassing the Qy optical transitions of bacteriopheophytins HA, HB, and PhiB, the absorption difference spectra collected for mutant RCs at 30-50 fs resemble the difference spectrum of the P+ PhiB- charge-separated state previously detected for this mutant in the picosecond time domain (E. Katilius, Z. Katiliene, S. Lin, A.K.W. Taguchi, N.W. Woodbury, J. Phys. Chem., B 106 (2002) 1471-1475). The dynamics of bleaching at 785 nm has a non-monotonous character, showing a single peak with a maximum at 40 fs. Based on these observations, the 785-nm bleaching is speculated to reflect reduction of 1% of PhiB in the B-branch within about 40 fs, which is earlier by approximately 80 fs than the reduction process in the A-branch, both being possibly linked to nuclear wave packet motion in the P* state.
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Affiliation(s)
- Andrei G Yakovlev
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119899, Russian Federation
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38
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Yakovlev AG, Jones MR, Potter JA, Fyfe PK, Vasilieva LG, Shkuropatov AY, Shuvalov VA. Primary charge separation between P* and BA: Electron-transfer pathways in native and mutant GM203L bacterial reaction centers. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2005.08.018] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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39
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Zinth W, Wachtveitl J. The First Picoseconds in Bacterial Photosynthesis?Ultrafast Electron Transfer for the Efficient Conversion of Light Energy. Chemphyschem 2005; 6:871-80. [PMID: 15884069 DOI: 10.1002/cphc.200400458] [Citation(s) in RCA: 129] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
In this Minireview, we describe the function of the bacterial reaction centre (RC) as the central photosynthetic energy-conversion unit by ultrafast spectroscopy combined with structural analysis, site-directed mutagenesis, pigment exchange and theoretical modelling. We show that primary energy conversion is a stepwise process in which an electron is transferred via neighbouring chromophores of the RC. A well-defined chromophore arrangement in a rigid protein matrix, combined with optimised energetics of the different electron carriers, allows a highly efficient charge-separation process. The individual molecular reactions at room temperature are well described by conventional electron-transfer theory.
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Affiliation(s)
- Wolfgang Zinth
- Department für Physik, Ludwig-Maximilians-Universität München, Oettingenstr. 67, 80538 München, Germany.
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40
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Borisov AY. The specificity of the structure of photosynthetic reaction centers, which makes them efficient in excitation trapping and conversion. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2005; 75:165-9. [PMID: 15462030 DOI: 10.1016/j.jphotobiol.2004.05.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- A Y Borisov
- Photosynthesis Department, A.N. Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State Unviersity, Russian Federation.
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41
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Shuvalov VA, Heber U. Photochemical reactions in dehydrated photosynthetic organisms, leaves, chloroplasts and photosystem II particles: reversible reduction of pheophytin and chlorophyll and oxidation of β-carotene. Chem Phys 2003. [DOI: 10.1016/s0301-0104(03)00277-5] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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42
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Yakovlev AG, Vasilieva LG, Shkuropatov AY, Bolgarina TI, Shkuropatova VA, Shuvalov VA. Mechanism of Charge Separation and Stabilization of Separated Charges in Reaction Centers of Chloroflexus aurantiacus and of YM210W(L) Mutants of Rhodobacter sphaeroides Excited by 20 fs Pulses at 90 K. J Phys Chem A 2003. [DOI: 10.1021/jp0300647] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- A. G. Yakovlev
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
| | - L. G. Vasilieva
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
| | - A. Ya. Shkuropatov
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
| | - T. I. Bolgarina
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
| | - V. A. Shkuropatova
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
| | - V. A. Shuvalov
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia, and Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia
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Shuvalov VA, Yakovlev AG. Coupling of nuclear wavepacket motion and charge separation in bacterial reaction centers. FEBS Lett 2003; 540:26-34. [PMID: 12681478 DOI: 10.1016/s0014-5793(03)00237-0] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
The mechanism of the charge separation and stabilization of separated charges was studied using the femtosecond absorption spectroscopy. It was found that nuclear wavepacket motions on potential energy surface of the excited state of the primary electron donor P* leads to a coherent formation of the charge separated states P(+)B(A)(-), P(+)H(A)(-) and P(+)H(B)(-) (where B(A), H(B) and H(A) are the primary and secondary electron acceptors, respectively) in native, pheophytin-modified and mutant reaction centers (RCs) of Rhodobacter sphaeroides R-26 and in Chloroflexus aurantiacus RCs. The processes were studied by measurements of coherent oscillations in kinetics at 890 and 935 nm (the stimulated emission bands of P*), at 800 nm (the absorption band of B(A)) and at 1020 nm (the absorption band of B(A)(-)) as well as at 760 nm (the absorption band of H(A)) and at 750 nm (the absorption band of H(B)). It was found that wavepacket motion on the 130-150 cm(-1) potential surface of P* is accompanied by approaches to the intercrossing region between P* and P(+)B(A)(-) surfaces at 120 and 380 fs delays emitting light at 935 nm (P*) and absorbing light at 1020 nm (P(+)B(A)(-)). In the presence of Tyr M210 (Rb. sphaeroides) or M195 (C. aurantiacus) the stabilization of P(+)B(A)(-) is observed within a few picosseconds in contrast to YM210W. At even earlier delay (approximately 40 fs) the emission at 895 nm and bleaching at 748 nm are observed in C. aurantiacus RCs showing the wavepacket approach to the intercrossing between the P* and P(+)H(B)(-) surfaces at that time. The 32 cm(-1) rotation mode of HOH was found to modulate the electron transfer rate probably due to including of this molecule in polar chain connecting P(B) and B(A) and participating in the charge separation. The mechanism of the charge separation and stabilization of separated charges is discussed in terms of the role of nuclear motions, of polar groups connecting P and acceptors and of proton of OH group of TyrM210.
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Affiliation(s)
- V A Shuvalov
- Laboratory of Photobiophysics, Belozersky Institute of Chemical and Physical Biology of Moscow State University, Moscow 119992, Russia.
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Shkuropatov AY, Neerken S, Permentier HP, de Wijn R, Schmidt KA, Shuvalov VA, Aartsma TJ, Gast P, Hoff AJ. The effect of exchange of bacteriopheophytin a with plant pheophytin a on charge separation in Y(M210)W mutant reaction centers of Rhodobacter sphaeroides at low temperature. BIOCHIMICA ET BIOPHYSICA ACTA 2003; 1557:1-12. [PMID: 12615343 DOI: 10.1016/s0005-2728(02)00373-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The bacteriopheophytin a molecules at the H(A) and H(B) binding sites of reaction centers (RCs) of the Y(M210)W mutant of Rhodobacter sphaeroides were chemically exchanged with plant pheophytin a. The Y(M210)W mutation slows down the formation of H(A)(-), presumably by raising the free energy level of the P(+)B(A)(-) state above that of P* due to increasing the oxidation potential of the primary electron donor P and lowering the reduction potential of the accessory bacteriochlorophyll B(A). Exchange of the bacteriopheophytins with pheophytin a on the contrary lowers the redox potential of H(A), inhibiting its reduction. A combination of the mutation and pigment exchange was therefore expected to make the A-side of the RC incapable of electron transfer and cause the excited state P* to deactivate directly to the ground state or through the B-side, or both. Time-resolved absorption difference spectroscopy at 10 K on the RCs that were modified in this way showed a lifetime of P* lengthened to about 500 ps as compared to about 200 ps measured in the original Y(M210)W RCs. We show that the decay of P* in the pheophytin-exchanged preparations is accompanied by both return to the ground state and formation of a new charge-separated state, the absorption difference spectrum of which is characterized by bleachings at 811 and 890 nm. This latter state was formed with a time constant of ca. 1.7 ns and a yield of about 30%, and lasted a few nanoseconds. On the basis of spectroscopic observations these bands at 811 and 890 nm are tentatively attributed to the presence of the P(+)B(B)(-) state, where B(B) is the accessory bacteriochlorophyll in the "inactive" B-branch of the cofactors. The B(B) molecules in Y(M210)W RCs are suggested to be spectrally heterogeneous, absorbing in the Q(y) region at 813 or 806 nm. The results are discussed in terms of perturbation of the free energy level of the P(+)B(B)(-) state and absorption properties of the B(B) bacteriochlorophyll in the mutant RCs due to a long-range effect of the Y(M210)W mutation on the protein environment of the B(B) binding pocket.
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Affiliation(s)
- Anatoli Ya Shkuropatov
- Institute of Basic Biological Problems, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russian Federation.
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Yakovlev AG, Shkuropatov AY, Shuvalov VA. Nuclear wave packet motion between P* and P(+)B(A)(-) potential surfaces with a subsequent electron transfer to H(A) in bacterial reaction centers at 90 K. Electron transfer pathway. Biochemistry 2002; 41:14019-27. [PMID: 12437359 DOI: 10.1021/bi020250n] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In Rhodobacter sphaeroides R-26 reaction centers (RCs) the nuclear wave packet induced by 25 fs excitation at 90 K moves on the primary electron donor P* potential energy hypersurface with initial frequency at approximately 130 cm(-1) (monitored by stimulated emission measurement). At the long-wavelength side of P* stimulated emission at 935 nm the wave packet is transferred to the surface with P(+)B(A)(-) character at 120, 380, 1.2 fs, etc. delays (monitored by measurement of the primary electron acceptor B(A)(-) band at 1020 nm). However, only beginning from 380 fs delay and later the relative stabilization of the state P(+)B(A)(-) is observed. This is accompanied by the electron transfer to bacteriopheophytin H(A) (monitored by H(A) band measurement at 760 nm). The most active mode of 32 cm(-1) in the electron transfer and its overtones up to the seventh were found in the Fourier transform spectrum of the oscillatory part of the kinetics of the P* stimulated emission and of the P(+)B(A)(-) and P(+)H(A)(-) formation. This mode and its overtones are apparently populated via the 130 cm(-1) vibrational mode. The deuteration of the sample shifts the fundamental frequency (32 cm(-1)) and all overtones by the same factor of approximately 1.3. This mode and its overtones are suppressed by a factor of approximately 4.7 in the dry film of RCs. The results obtained indicate that the 32 cm(-1) mode might be related to a rotation of hydrogen-containing groups (possibly the water molecule) participating in the modulation of the primary electron transfer from P* to B(A)(-) in at least 35% of RCs. The Brookhaven Protein Data Bank (1PRC) displays the water molecule located at the position HOH302 between His M200 (axial ligand for P(B)) and the oxygen of ring V of B(A) which might be a part (approximately 35%) of the molecular pathway for electron transfer from P* to B(A).
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Affiliation(s)
- Andrei G Yakovlev
- Department of Photobiophysics, Belozersky Institute of Chemical and Physical Biology, Moscow State University, Moscow 119992, Russia
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Breton J, Martin JL, Fleming GR, Lambry JC. Low-temperature femtosecond spectroscopy of the initial step of electron transfer in reaction centers from photosynthetic purple bacteria. Biochemistry 2002. [DOI: 10.1021/bi00421a043] [Citation(s) in RCA: 145] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Ivashin N, Larsson S. Vibrational Mechanism for Primary Charge Separation in the Reaction Center of Rhodobacter Sphaeroides. J Phys Chem B 2002. [DOI: 10.1021/jp013431s] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nikolaj Ivashin
- Institute of Molecular and Atomic Physics, National Academy of Sciences, 70 F. Skaryna Avenue, 220072 Minsk, Belarus
| | - Sven Larsson
- Department of Physical Chemistry, Chalmers University of Technology, S-41296 Göteborg, Sweden
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Partitioning technique in electron transfer and excitation energy transfer. ADVANCES IN QUANTUM CHEMISTRY 2002. [DOI: 10.1016/s0065-3276(02)41044-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
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49
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Sebban P, Barbet JC. Intermediate states between P* and Pf in bacterial reaction centers, as detected by the fluorescence kinetics. FEBS Lett 2001. [DOI: 10.1016/0014-5793(84)80024-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Akhmanov S, Borisov A, Danielius R, Gadonas R, Kozlowski V, Piskarskas A, Razjivin A, Shuvalov V. One- and two-photon picosecond processes of electron transfer among the porphyrin molecules in bacterial reaction centers. FEBS Lett 2001. [DOI: 10.1016/0014-5793(80)80881-7] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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