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Nakanishi K, Crouch R. Application of Artificial Pigments to Structure Determination and Study of Photoinduced Transformations of Retinal Proteins. Isr J Chem 2013. [DOI: 10.1002/ijch.199500030] [Citation(s) in RCA: 102] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Koyama K, Miyasaka T, Needleman R, Lanyi JK. Photoelectrochemical Verification of Proton-Releasing Groups in Bacteriorhodopsin. Photochem Photobiol 2008. [DOI: 10.1111/j.1751-1097.1998.tb09699.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Bamann C, Kirsch T, Nagel G, Bamberg E. Spectral Characteristics of the Photocycle of Channelrhodopsin-2 and Its Implication for Channel Function. J Mol Biol 2008; 375:686-94. [DOI: 10.1016/j.jmb.2007.10.072] [Citation(s) in RCA: 162] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2007] [Revised: 10/17/2007] [Accepted: 10/26/2007] [Indexed: 10/22/2022]
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Gaertner W, Oesterhelt D, Vogel J, Maurer R, Schneider S. Photocycles of bacteriorhodopsins containing 13-alkylsubstituted retinals. Biochemistry 2002. [DOI: 10.1021/bi00409a055] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Logunov SL, Masciangioli TM, El-Sayed MA. Quantitative Determination of the Protein Catalytic Efficiency for the Retinal Excited-State Decay in Bacteriorhodopsin. J Phys Chem B 1998. [DOI: 10.1021/jp9813600] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- S. L. Logunov
- Laser Dynamics Laboratory School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400
| | - T. M. Masciangioli
- Laser Dynamics Laboratory School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400
| | - M. A. El-Sayed
- Laser Dynamics Laboratory School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400
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Jiang D, Diao P, Tong R, Gu D, Zhong B. Ca2+ induced Fe(CN)63−/4− electron transfer at Pt supported BLM electrode. ACTA ACUST UNITED AC 1998. [DOI: 10.1016/s0302-4598(97)00065-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Misra S, Ebrey TG, Crouch RK, Menick DR. Charge movements in the 13-cis photocycles of the bacteriorhodopsin mutants R82K and R82Q. Photochem Photobiol 1997; 65:1039-44. [PMID: 9188284 DOI: 10.1111/j.1751-1097.1997.tb07966.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
We have examined light-induced currents in oriented membranes of the bacteriorhodopsin mutants R82K and R82Q. Our results suggest that two photocurrent components found in R82K, with 30 and 300 microseconds lifetimes, are due to the photocycle of the 13-cis rather than the all-trans form of the pigment. We investigated the pH dependence of these components and their correspondence to absorbance changes at 660 nm characteristic of photointermediates of the 13-cis cycle. The presence of a D2O effect suggests that the charge motions producing these photocurrents are related to proton or protonated amino acid movement within the molecule. The current amplitudes depend on the protonation states of at least two residues, D85 and (probably) E204. In R82Q, a 10 microseconds photocurrent is observed that also depends on the protonation state of D85 and is similar to the 30 microseconds current in R82K. We attempt to explain these currents in terms of a model for interacting residues in the extracellular half of the bacteriorhodopsin channel.
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Affiliation(s)
- S Misra
- Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, USA
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Kovács I, Hollós-Nagy K, Váró G. Dark adaptation and spectral changes in Triton-X-100-treated bacteriorhodopsin. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 1995. [DOI: 10.1016/1011-1344(94)07050-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ikonen M, Sharonov A, Tkachenko N, Lemmetyinen H. The photovoltage signals of bacteriorhodopsin in Langmuir-Blodgett films with different molecular orientations. ACTA ACUST UNITED AC 1993. [DOI: 10.1002/amo.860020304] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Dencher NA, Papadopoulos G, Dresselhaus D, Büldt G. Light- and dark-adapted bacteriorhodopsin, a time-resolved neutron diffraction study. BIOCHIMICA ET BIOPHYSICA ACTA 1990; 1026:51-6. [PMID: 2378881 DOI: 10.1016/0005-2736(90)90331-h] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Recently, neutron diffraction experiments have revealed well-resolved and reversible changes in the protein conformation of bacteriorhodopsin (BR) between the light-adapted ground state and the M-intermediate of the proton pumping photocycle (Dencher, Dresselhaus, Zaccai and Büldt (1989) Proc. Natl. Acad. Sci. USA 86, 7876-7879). These changes are triggered by the light-induced isomerization of the chromophore retinal from the all-trans to the 13-cis configuration. Dark-adapted purple membranes contain a mixture of two pigment species with either the all-trans- or 13-cis-retinal isomer as chromophore. Employing a time-resolved neutron diffraction technique, no changes in protein conformation in the resolution regime of up to 7 A are observed during the transition between the two ground-state species 13-cis-BR and all-trans-BR. This is in line with the fact that the conversion of all-trans BR to 13-cis-BR involves an additional isomerization about the C15 = N Schiff's base bond, which in contrast to M formation minimizes retinal displacement and keeps the Schiff's base in the original protein environment. Furthermore, there is no indication for large-scale redistribution of water molecules in the purple membrane during light-dark adaptation.
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Affiliation(s)
- N A Dencher
- Department of Physics/Biophysics, Freie Universität Berlin, Germany
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Proton transport and M-type intermediate formation by 13-cis-bacteriorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1990. [DOI: 10.1016/0005-2728(90)90116-l] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Trissl HW, Gärtner W, Leibl W. Reversed picosecond charge displacement from the photoproduct K of bacteriorhodopsin demonstrated photoelectrically. Chem Phys Lett 1989. [DOI: 10.1016/0009-2614(89)87381-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Gärtner W, Oesterhelt D. Methoxyretinals in bacteriorhodopsin. Absorption maxima, cis-trans isomerization and retinal protein interaction. EUROPEAN JOURNAL OF BIOCHEMISTRY 1988; 176:641-8. [PMID: 2844533 DOI: 10.1111/j.1432-1033.1988.tb14325.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Analogue bacteriorhodopsins (BRs) were reconstituted from bacterioopsin and 9-, 11-, or 13-methoxyretinals or their demethyl derivatives, respectively. In organic solvents the retinals occur as cis isomers of the respective double bonds carrying the methoxy group. 9-Methoxyretinal, present as the 9-cis isomer, does not form an analogue BR with bacterioopsin in the dark. Upon illumination, a BR is produced with an absorbance maximum at 560 nm. This compound is thermally unstable, and converts back into the 9-cis-containing complex (lambda max = 410 nm) in the dark. Removal of the 13-methyl group from this compound (= 9-methoxy 13-demethyl retinal) does not change the 9-cis configuration of the free retinal, but allows the reconstitution of a thermally stable chromoprotein absorbing around 500 nm with a proton translocation rate of about 10% of the BR value, comparable to the 13-demethyl BR value [Gärtner, W., Towner, P., Hopf, H. & Oesterhelt, D. (1983) Biochemistry 22, 2637-2644]. 11-Methoxy BRs (13-demethyl and 9,13-didemethyl) absorb around 530 nm and are inactive. 13-Methoxy retinal (13-cis isomer) reconstitutes a chromoprotein with an absorbance maximum at 515 nm, which can be photoconverted to a thermostable 460-nm-absorbing complex. For the 515-nm-absorbing species of 13-methoxy BR a light-induced proton translocation was not detected in measurements with cell vesicles (detection of pH changes in the vesicle preparation). Only by photocurrent measurements in a bilayer experiment could a very diminished photocurrent be detected, about 1-2% of BR, [Fendler et al. (1987) Biochim. Biophys. Acta 893, 60-68]. The reconstitution rate of 13-methoxy BR from 13-methoxy retinal and bacterioopsin is slower by a factor of 40 compared to 13-ethyl BR, although both substituents are of similar size. The position 13 of retinal was found to be most sensitive for regulation of the absorption maximum and the formation and stability of the all-trans isomer, which is the active form for light-induced proton translocation. The results suggest that an electronic interaction with a charged residue of the binding site exists around position 13 of retinal, which is disturbed when a methoxy group replaces the methyl or ethyl group at that position. This electronic interaction is essential for maintaining the active all-trans configuration of retinal.
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Affiliation(s)
- W Gärtner
- Institut für Biologie I (Zoologie), Freiburg, Federal Republic of Germany
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Light- and dark-adaptation of bacteriorhodopsin measured by a photoelectric method. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1988. [DOI: 10.1016/0005-2728(88)90188-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Fendler K, Gärtner W, Oesterhelt D, Bamberg E. Electrogenic transport properties of bacteriorhodopsin containing chemically modified retinal analogues. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1987. [DOI: 10.1016/0005-2728(87)90148-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Arrio B, Johannin G, Volfin P, Lefort-Tran M, Packer L, Robinson AE, Hrabeta E. Aggregation and proton release of purple and white membranes following cleavage of the carboxyl-terminal tail of bacteriorhodopsin. Arch Biochem Biophys 1986; 246:185-91. [PMID: 3008650 DOI: 10.1016/0003-9861(86)90462-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Our results indicate that the previously reported decrease in proton release by proteolyzed purple membrane sheets was due merely to the aggregation state of these preparations and not to the loss of the carboxyl-terminal tail. Changes in H+/M412 ratios obtained for purple and white membrane preparations correlate with the measured aggregation. White membrane preparations consistently exhibit H+/M412 ratios more than twice those measured for native purple membranes under the same conditions. Quasi-elastic light scattering was used to characterize the size of isolated purple and white membrane sheets before and after proteolysis. The results clearly show that native purple membrane preparations are larger in size than would be expected and that, following trypsin treatment, they are on average more than an order of magnitude larger. Negative staining electron microscopy showed that the purple membrane became aggregated in stacked arrays. Bleaching and reconstitution with retinal also affect aggregation, but iodination or nitration of purple membrane does not affect the measured size. The average size of white membranes is smaller; this is consistent with results of electron microscopy and the size increase is much less than that of purple membranes following trypsin treatment. No size change occurs with retinal reconstitution. In aggregated purple membrane preparations, protons and other cations are unable to exchange freely with the aqueous medium, explaining why proteolysis lowers the proton release from purple membrane sheets in suspension.
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Lanyi JK. Chapter 11 Bacteriorhodopsin and related light-energy converters. NEW COMPREHENSIVE BIOCHEMISTRY 1984. [DOI: 10.1016/s0167-7306(08)60321-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Dencher NA. THE FIVE RETINAL-PROTEIN PIGMENTS OF HALOBACTERIA: BACTERIORHODOPSIN, HALORHODOPSIN, P 565, P 370, AND SLOW-CYCLING RHODOPSIN. Photochem Photobiol 1983. [DOI: 10.1111/j.1751-1097.1983.tb03611.x] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Dencher NA, Kohl KD, Heyn MP. Photochemical cycle and light-dark adaptation of monomeric and aggregated bacteriorhodopsin in various lipid environments. Biochemistry 1983; 22:1323-34. [PMID: 6838856 DOI: 10.1021/bi00275a002] [Citation(s) in RCA: 85] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
Spectral changes of bacteriorhodopsin (BR) reflecting its photochemical cycle and light-dark adaptation were monitored in order to study the effect of protein-protein and protein-lipid interactions on these reactions. For this purpose, the light-driven proton pump BR was reconstituted with various lipids, i.e., dimyristoyl- and dipalmitoyl-phosphatidylcholine, soybean phospholipids, and diphytanoyllecithin. In these vesicle systems, BR is monomeric above the lipid phase transition and above molar lipid to BR ratios of about 80. Well below the phase transition, BR is aggregated in a hexagonal lattice as in the purple membrane. This allows, on the one hand, comparison of monomeric and aggregated BR in the respective vesicle systems and, on the other hand, comparison of reconstituted BR with BR in the native purple membrane. The photoreaction cycle of all-trans-BR accompanying proton translocation proceeds via the same intermediates in the monomeric and aggregated pigment. Furthermore, both the rate and the activation energy for the decay of the cycle intermediate M-410 are independent of the aggregation state. From the results, we conclude that the functional unit responsible for BR's photocycle is the monomer itself. This is in accordance with previous observations that BR monomers are able to translocate protons during illumination [Drencher, N. A., & Heyn, M.P. (1979) FEBS Lett. 108, 307-310]. The light-dark adaptation reaction, however, is affected by BR's aggregation state. In the case of the monomer, the extent of light adaptation, i.e., the fraction of BR molecules containing 13-cis-retinal as chromophore which is converted by illumination to the respective pigment with the all-trans isomer, is reduced by 50% or more, and the rate of dark adaptation is slowed down about 2.5 times. For these properties too, the monomer is functional, but with a reduced efficiency. This indicates regulatory control by neighboring BR molecules. The rate of the photocycle as well as of dark adaptation is strongly affected by the chemical nature of the lipids used for reconstitution but not by the physical state of the lipid phase.
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