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For: Biely P, Benen J, Heinrichová K, Kester HC, Visser J. Inversion of configuration during hydrolysis of alpha-1,4-galacturonidic linkage by three Aspergillus polygalacturonases. FEBS Lett 1996;382:249-55. [PMID: 8605979 DOI: 10.1016/0014-5793(96)00171-8] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Number Cited by Other Article(s)
1
Priest T, Vidal-Melgosa S, Hehemann JH, Amann R, Fuchs BM. Carbohydrates and carbohydrate degradation gene abundance and transcription in Atlantic waters of the Arctic. ISME COMMUNICATIONS 2023;3:130. [PMID: 38071398 PMCID: PMC10710508 DOI: 10.1038/s43705-023-00324-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 10/17/2023] [Accepted: 10/25/2023] [Indexed: 02/13/2024]
2
Itoh T. Structures and functions of carbohydrate-active enzymes of chitinolytic bacteria Paenibacillus sp. str. FPU-7. Biosci Biotechnol Biochem 2021;85:1314-1323. [PMID: 33792636 DOI: 10.1093/bbb/zbab058] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Accepted: 03/22/2021] [Indexed: 11/14/2022]
3
Sichert A, Corzett CH, Schechter MS, Unfried F, Markert S, Becher D, Fernandez-Guerra A, Liebeke M, Schweder T, Polz MF, Hehemann JH. Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan. Nat Microbiol 2020;5:1026-1039. [PMID: 32451471 DOI: 10.1038/s41564-020-0720-2] [Citation(s) in RCA: 135] [Impact Index Per Article: 33.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 04/06/2020] [Indexed: 12/16/2022]
4
Chen CC, Dai L, Ma L, Guo RT. Enzymatic degradation of plant biomass and synthetic polymers. Nat Rev Chem 2020;4:114-126. [PMID: 37128024 DOI: 10.1038/s41570-020-0163-6] [Citation(s) in RCA: 158] [Impact Index Per Article: 39.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/09/2020] [Indexed: 12/17/2022]
5
Expression and Characterization of Hyperthermostable Exo-polygalacturonase TtGH28 from Thermotoga thermophilus. Mol Biotechnol 2016;58:509-19. [DOI: 10.1007/s12033-016-9948-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
6
Chinisaz M, Ghasemi A, Larijani B, Ebrahim-Habibi A. Amyloid formation and inhibition of an all-beta protein: A study on fungal polygalacturonase. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2013.11.011] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
7
Ogawa S, Ito M, Ohki H, Kimura T, Shimizu T, Matsuda M, Miyairi K. Glycosylation Status and Conformational Stability of Recombinant Stereum purpureum Endopolygalacturonase IVs Produced in an Aspergillus oryzae Expression System. J Appl Glycosci (1999) 2012. [DOI: 10.5458/jag.jag.jag-2011_017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]  Open
8
Swain S, Kay P, Ogawa M. Preventing unwanted breakups: using polygalacturonases to regulate cell separation. PLANT SIGNALING & BEHAVIOR 2011;6:93-7. [PMID: 21248492 PMCID: PMC3122015 DOI: 10.4161/psb.6.1.14147] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2010] [Accepted: 11/08/2010] [Indexed: 05/09/2023]
9
Oligogalacturonate hydrolase with unique substrate preference from the pulp of parsley roots. Biologia (Bratisl) 2009. [DOI: 10.2478/s11756-009-0038-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
10
Ogawa S, Shimizu T, Ohki H, Araya T, Okuno T, Miyairi K. Expression, purification, and analyses of glycosylation and disulfide bonds of Stereum purpureum endopolygalacturonase I in Pichia pastoris. Protein Expr Purif 2009;65:15-22. [PMID: 19174189 DOI: 10.1016/j.pep.2008.12.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2008] [Revised: 12/09/2008] [Accepted: 12/09/2008] [Indexed: 10/21/2022]
11
Ogawa M, Kay P, Wilson S, Swain SM. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis. THE PLANT CELL 2009;21:216-33. [PMID: 19168715 PMCID: PMC2648098 DOI: 10.1105/tpc.108.063768] [Citation(s) in RCA: 266] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2008] [Revised: 12/21/2008] [Accepted: 01/06/2009] [Indexed: 05/08/2023]
12
Comparative biochemical and structural characterizations of fungal polygalacturonases. Biologia (Bratisl) 2008. [DOI: 10.2478/s11756-008-0018-y] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
13
Schnitzhofer W, Weber HJ, Vršanská M, Biely P, Cavaco-Paulo A, Guebitz G. Purification and mechanistic characterisation of two polygalacturonases from Sclerotium rolfsii. Enzyme Microb Technol 2007. [DOI: 10.1016/j.enzmictec.2006.11.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
14
Woosley B, Xie M, Wells L, Orlando R, Garrison D, King D, Bergmann C. Comprehensive glycan analysis of recombinant Aspergillus niger endo-polygalacturonase C. Anal Biochem 2006;354:43-53. [PMID: 16697346 DOI: 10.1016/j.ab.2006.02.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2005] [Revised: 01/24/2006] [Accepted: 02/01/2006] [Indexed: 11/16/2022]
15
Klug-Santner BG, Schnitzhofer W, Vrsanská M, Weber J, Agrawal PB, Nierstrasz VA, Guebitz GM. Purification and characterization of a new bioscouring pectate lyase from Bacillus pumilus BK2. J Biotechnol 2006;121:390-401. [PMID: 16168510 DOI: 10.1016/j.jbiotec.2005.07.019] [Citation(s) in RCA: 68] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2004] [Revised: 07/08/2005] [Accepted: 07/14/2005] [Indexed: 10/25/2022]
16
Stam MR, Blanc E, Coutinho PM, Henrissat B. Evolutionary and mechanistic relationships between glycosidases acting on α- and β-bonds. Carbohydr Res 2005;340:2728-34. [PMID: 16226731 DOI: 10.1016/j.carres.2005.09.018] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2005] [Accepted: 09/15/2005] [Indexed: 10/25/2022]
17
Shimizu T, Shibata H, Araya T, Nakatsu T, Miyairi K, Okuno T, Kato H. Expression, purification, and crystallization of endopolygalacturonase from a pathogenic fungus, Stereum purpureum, in Escherichia coli. Protein Expr Purif 2005;44:130-5. [PMID: 16061394 DOI: 10.1016/j.pep.2005.06.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2005] [Revised: 05/30/2005] [Accepted: 06/02/2005] [Indexed: 11/20/2022]
18
Choi JK, Lee BH, Chae CH, Shin W. Computer modeling of the rhamnogalacturonase-"hairy" pectin complex. Proteins 2004;55:22-33. [PMID: 14997537 DOI: 10.1002/prot.10434] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
19
Shimizu T, Nakatsu T, Miyairi K, Okuno T, Kato H. Reaction Mechanism Based on X-ray Crystallography at Atomic Resolution of Endopolygalacutronase I from Fungus Stereum purpureum. J Appl Glycosci (1999) 2004. [DOI: 10.5458/jag.51.161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]  Open
20
Larsson AM, Andersson R, Ståhlberg J, Kenne L, Jones TA. Dextranase from Penicillium minioluteum: reaction course, crystal structure, and product complex. Structure 2003;11:1111-21. [PMID: 12962629 DOI: 10.1016/s0969-2126(03)00147-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
21
Parisot J, Langlois V, Sakanyan V, Rabiller C. Cloning expression and characterization of a thermostable exopolygalacturonase from Thermotoga maritima. Carbohydr Res 2003;338:1333-7. [PMID: 12791288 DOI: 10.1016/s0008-6215(03)00165-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
22
Mohamed SA, Christensen TMIE, Mikkelsen JD. New polygalacturonases from Trichoderma reesei: characterization and their specificities to partially methylated and acetylated pectins. Carbohydr Res 2003;338:515-24. [PMID: 12668107 DOI: 10.1016/s0008-6215(02)00398-1] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Purification and biochemical properties of microbial pectinases—a review. Process Biochem 2003. [DOI: 10.1016/s0032-9592(02)00203-0] [Citation(s) in RCA: 172] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
24
Shimizu T, Nakatsu T, Miyairi K, Okuno T, Kato H. Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution. Biochemistry 2002;41:6651-9. [PMID: 12022868 DOI: 10.1021/bi025541a] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
25
de Vries RP, Visser J. Aspergillus enzymes involved in degradation of plant cell wall polysaccharides. Microbiol Mol Biol Rev 2001;65:497-522, table of contents. [PMID: 11729262 PMCID: PMC99039 DOI: 10.1128/mmbr.65.4.497-522.2001] [Citation(s) in RCA: 542] [Impact Index Per Article: 23.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
26
Jenkins J, Pickersgill R. The architecture of parallel beta-helices and related folds. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2001;77:111-75. [PMID: 11747907 DOI: 10.1016/s0079-6107(01)00013-x] [Citation(s) in RCA: 193] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
27
Cho SW, Lee S, Shin W. The X-ray structure of Aspergillus aculeatus polygalacturonase and a modeled structure of the polygalacturonase-octagalacturonate complex. J Mol Biol 2001;311:863-78. [PMID: 11518536 DOI: 10.1006/jmbi.2001.4919] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
28
Ishii T, Matsunaga T. Pectic polysaccharide rhamnogalacturonan II is covalently linked to homogalacturonan. PHYTOCHEMISTRY 2001;57:969-74. [PMID: 11423143 DOI: 10.1016/s0031-9422(01)00047-4] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
29
Biely P, Vrsanská M, Visser J. Inverting character of alpha-glucuronidase A from Aspergillus tubingensis. BIOCHIMICA ET BIOPHYSICA ACTA 2000;1474:360-4. [PMID: 10779688 DOI: 10.1016/s0304-4165(00)00029-5] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
30
Armand S, Wagemaker MJ, Sánchez-Torres P, Kester HC, van Santen Y, Dijkstra BW, Visser J, Benen JA. The active site topology of Aspergillus niger endopolygalacturonase II as studied by site-directed mutagenesis. J Biol Chem 2000;275:691-6. [PMID: 10617668 DOI: 10.1074/jbc.275.1.691] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
31
van Santen Y, Benen JA, Schröter KH, Kalk KH, Armand S, Visser J, Dijkstra BW. 1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis. J Biol Chem 1999;274:30474-80. [PMID: 10521427 DOI: 10.1074/jbc.274.43.30474] [Citation(s) in RCA: 158] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
32
Cook BJ, Clay RP, Bergmann CW, Albersheim P, Darvill AG. Fungal polygalacturonases exhibit different substrate degradation patterns and differ in their susceptibilities to polygalacturonase-inhibiting proteins. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 1999;12:703-11. [PMID: 10432636 DOI: 10.1094/mpmi.1999.12.8.703] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
33
Benen JA, Kester HC, Visser J. Kinetic characterization of Aspergillus niger N400 endopolygalacturonases I, II and C. EUROPEAN JOURNAL OF BIOCHEMISTRY 1999;259:577-85. [PMID: 10092840 DOI: 10.1046/j.1432-1327.1999.00080.x] [Citation(s) in RCA: 116] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
34
Pickersgill R, Smith D, Worboys K, Jenkins J. Crystal structure of polygalacturonase from Erwinia carotovora ssp. carotovora. J Biol Chem 1998;273:24660-4. [PMID: 9733763 DOI: 10.1074/jbc.273.38.24660] [Citation(s) in RCA: 123] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
35
Jenkins J, Mayans O, Pickersgill R. Structure and evolution of parallel beta-helix proteins. J Struct Biol 1998;122:236-46. [PMID: 9724625 DOI: 10.1006/jsbi.1998.3985] [Citation(s) in RCA: 91] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
36
Mutter M, Beldman G, Pitson SM, Schols HA, Voragen AG. Rhamnogalacturonan alpha-d-galactopyranosyluronohydrolase. An enzyme that specifically removes the terminal nonreducing galacturonosyl residue in rhamnogalacturonan regions of pectin. PLANT PHYSIOLOGY 1998;117:153-163. [PMID: 9576784 PMCID: PMC34998 DOI: 10.1104/pp.117.1.153] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/1997] [Accepted: 01/29/1998] [Indexed: 05/22/2023]
37
Pitson SM, Mutter M, van den Broek LA, Voragen AG, Beldman G. Stereochemical course of hydrolysis catalysed by alpha-L-rhamnosyl and alpha-D-galacturonosyl hydrolases from Aspergillus aculeatus. Biochem Biophys Res Commun 1998;242:552-9. [PMID: 9464254 DOI: 10.1006/bbrc.1997.8009] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
38
Petersen TN, Kauppinen S, Larsen S. The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel beta helix. Structure 1997;5:533-44. [PMID: 9115442 DOI: 10.1016/s0969-2126(97)00209-8] [Citation(s) in RCA: 122] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
39
Pitson SM, Voragen AG, Beldman G. Stereochemical course of hydrolysis catalyzed by arabinofuranosyl hydrolases. FEBS Lett 1996;398:7-11. [PMID: 8946944 DOI: 10.1016/s0014-5793(96)01153-2] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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