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For: Cooper LP, Dryden DT. The domains of a type I DNA methyltransferase. Interactions and role in recognition of DNA methylation. J Mol Biol 1994;236:1011-21. [PMID: 8120883 DOI: 10.1016/0022-2836(94)90008-6] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Number Cited by Other Article(s)
1
Zimmerman EH, Ramsey EL, Hunter KE, Villadelgado SM, Phillips CM, Shipman RT, Forsyth MH. The Helicobacter pylori methylome is acid-responsive due to regulation by the two-component system ArsRS and the type I DNA methyltransferase HsdM1 (HP0463). J Bacteriol 2024;206:e0030923. [PMID: 38179929 PMCID: PMC10810217 DOI: 10.1128/jb.00309-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Accepted: 12/14/2023] [Indexed: 01/06/2024]  Open
2
Molecular insights into DNA recognition and methylation by non-canonical type I restriction-modification systems. Nat Commun 2022;13:6391. [PMID: 36302770 PMCID: PMC9613975 DOI: 10.1038/s41467-022-34085-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Accepted: 10/11/2022] [Indexed: 12/25/2022]  Open
3
Morgan RD, Luyten YA, Johnson SA, Clough EM, Clark TA, Roberts RJ. Novel m4C modification in type I restriction-modification systems. Nucleic Acids Res 2016;44:9413-9425. [PMID: 27580720 PMCID: PMC5100572 DOI: 10.1093/nar/gkw743] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Accepted: 08/12/2016] [Indexed: 11/12/2022]  Open
4
Kennaway CK, Taylor JE, Song CF, Potrzebowski W, Nicholson W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Artero JB, Bujnicki JM, Trinick J, Kneale GG, Dryden DT. Structure and operation of the DNA-translocating type I DNA restriction enzymes. Genes Dev 2012;26:92-104. [PMID: 22215814 PMCID: PMC3258970 DOI: 10.1101/gad.179085.111] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2011] [Accepted: 11/14/2011] [Indexed: 11/24/2022]
5
Gao P, Tang Q, An X, Yan X, Liang D. Structure of HsdS subunit from Thermoanaerobacter tengcongensis sheds lights on mechanism of dynamic opening and closing of type I methyltransferase. PLoS One 2011;6:e17346. [PMID: 21399684 PMCID: PMC3047542 DOI: 10.1371/journal.pone.0017346] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2010] [Accepted: 01/29/2011] [Indexed: 11/25/2022]  Open
6
Madhusoodanan UK, Rao DN. Diversity of DNA methyltransferases that recognize asymmetric target sequences. Crit Rev Biochem Mol Biol 2010;45:125-45. [PMID: 20184512 DOI: 10.3109/10409231003628007] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
7
Kennaway CK, Obarska-Kosinska A, White JH, Tuszynska I, Cooper LP, Bujnicki JM, Trinick J, Dryden DTF. The structure of M.EcoKI Type I DNA methyltransferase with a DNA mimic antirestriction protein. Nucleic Acids Res 2009;37:762-70. [PMID: 19074193 PMCID: PMC2647291 DOI: 10.1093/nar/gkn988] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2008] [Revised: 11/20/2008] [Accepted: 11/21/2008] [Indexed: 12/25/2022]  Open
8
Pennadam SS, Firman K, Alexander C, Górecki DC. Protein-polymer nano-machines. Towards synthetic control of biological processes. J Nanobiotechnology 2004;2:8. [PMID: 15350203 PMCID: PMC519025 DOI: 10.1186/1477-3155-2-8] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2004] [Accepted: 09/06/2004] [Indexed: 11/10/2022]  Open
9
Hosted TJ, Wang T, Horan AC. Characterization of the Streptomyces lavendulae IMRU 3455 linear plasmid pSLV45. Microbiology (Reading) 2004;150:1819-1827. [PMID: 15184568 DOI: 10.1099/mic.0.26994-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
10
Adamczyk-Popławska M, Kondrzycka A, Urbanek K, Piekarowicz A. Tetra-amino-acid tandem repeats are involved in HsdS complementation in type IC restriction-modification systems. MICROBIOLOGY-SGM 2004;149:3311-3319. [PMID: 14600243 DOI: 10.1099/mic.0.26497-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
11
Loenen WAM. Tracking EcoKI and DNA fifty years on: a golden story full of surprises. Nucleic Acids Res 2004;31:7059-69. [PMID: 14654681 PMCID: PMC291878 DOI: 10.1093/nar/gkg944] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
12
The Type I and III Restriction Endonucleases: Structural Elements in Molecular Motors that Process DNA. ACTA ACUST UNITED AC 2004. [DOI: 10.1007/978-3-642-18851-0_5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
13
Marks P, McGeehan J, Wilson G, Errington N, Kneale G. Purification and characterisation of a novel DNA methyltransferase, M.AhdI. Nucleic Acids Res 2003;31:2803-10. [PMID: 12771207 PMCID: PMC156732 DOI: 10.1093/nar/gkg399] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
14
Powell LM, Lejeune E, Hussain FS, Cronshaw AD, Kelly SM, Price NC, Dryden DTF. Assembly of EcoKI DNA methyltransferase requires the C-terminal region of the HsdM modification subunit. Biophys Chem 2003;103:129-37. [PMID: 12568936 DOI: 10.1016/s0301-4622(02)00251-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
15
Smith MA, Read CM, Kneale GG. Domain structure and subunit interactions in the type I DNA methyltransferase M.EcoR124I. J Mol Biol 2001;314:41-50. [PMID: 11724530 DOI: 10.1006/jmbi.2001.5123] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Dryden DT, Murray NE, Rao DN. Nucleoside triphosphate-dependent restriction enzymes. Nucleic Acids Res 2001;29:3728-41. [PMID: 11557806 PMCID: PMC55918 DOI: 10.1093/nar/29.18.3728] [Citation(s) in RCA: 120] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
17
Boucher I, Emond E, Parrot M, Moineau S. DNA sequence analysis of three Lactococcus lactis plasmids encoding phage resistance mechanisms. J Dairy Sci 2001;84:1610-20. [PMID: 11467810 DOI: 10.3168/jds.s0022-0302(01)74595-x] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
18
Murray NE. Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol Mol Biol Rev 2000;64:412-34. [PMID: 10839821 PMCID: PMC98998 DOI: 10.1128/mmbr.64.2.412-434.2000] [Citation(s) in RCA: 325] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
19
Rao DN, Saha S, Krishnamurthy V. ATP-dependent restriction enzymes. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 2000;64:1-63. [PMID: 10697406 DOI: 10.1016/s0079-6603(00)64001-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
20
Janscak P, Weiserova M, Hubacek J, Holubova I, Dutta CF, Firman K. Two temperature-sensitive mutations in the DNA binding subunit of EcoKI with differing properties. FEMS Microbiol Lett 2000;182:99-104. [PMID: 10612739 DOI: 10.1111/j.1574-6968.2000.tb08881.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
21
Davies GP, Martin I, Sturrock SS, Cronshaw A, Murray NE, Dryden DT. On the structure and operation of type I DNA restriction enzymes. J Mol Biol 1999;290:565-79. [PMID: 10390354 DOI: 10.1006/jmbi.1999.2908] [Citation(s) in RCA: 69] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
22
Mernagh DR, Taylor IA, Kneale GG. Interaction of the type I methyltransferase M.EcoR124I with modified DNA substrates: sequence discrimination and base flipping. Biochem J 1998;336 ( Pt 3):719-25. [PMID: 9841886 PMCID: PMC1219925 DOI: 10.1042/bj3360719] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
23
Powell LM, Dryden DT, Murray NE. Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme. J Mol Biol 1998;283:963-76. [PMID: 9799636 DOI: 10.1006/jmbi.1998.2143] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
24
Powell LM, Connolly BA, Dryden DT. The DNA binding characteristics of the trimeric EcoKI methyltransferase and its partially assembled dimeric form determined by fluorescence polarisation and DNA footprinting. J Mol Biol 1998;283:947-61. [PMID: 9799635 DOI: 10.1006/jmbi.1998.2142] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
25
Ramchandani S, Bigey P, Szyf M. Genomic structure of the human DNA methyltransferase gene. Biol Chem 1998;379:535-40. [PMID: 9628348 DOI: 10.1515/bchm.1998.379.4-5.535] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
26
Schouler C, Gautier M, Ehrlich SD, Chopin MC. Combinational variation of restriction modification specificities in Lactococcus lactis. Mol Microbiol 1998;28:169-78. [PMID: 9593305 DOI: 10.1046/j.1365-2958.1998.00787.x] [Citation(s) in RCA: 67] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
27
Smith MA, Mernagh DR, Kneale GG. Expression and characterisation of the N-terminal fragment of the HsdS subunit of M.EcoR124I. Biol Chem 1998;379:505-9. [PMID: 9628344 DOI: 10.1515/bchm.1998.379.4-5.505] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
28
Sturrock SS, Dryden DT. A prediction of the amino acids and structures involved in DNA recognition by type I DNA restriction and modification enzymes. Nucleic Acids Res 1997;25:3408-14. [PMID: 9254696 PMCID: PMC146914 DOI: 10.1093/nar/25.17.3408] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
29
Thorpe PH, Ternent D, Murray NE. The specificity of sty SKI, a type I restriction enzyme, implies a structure with rotational symmetry. Nucleic Acids Res 1997;25:1694-700. [PMID: 9108149 PMCID: PMC146652 DOI: 10.1093/nar/25.9.1694] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
30
Mernagh DR, Reynolds LA, Kneale GG. DNA binding and subunit interactions in the type I methyltransferase M.EcoR124I. Nucleic Acids Res 1997;25:987-91. [PMID: 9023108 PMCID: PMC146542 DOI: 10.1093/nar/25.5.987] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
31
Dryden DT, Cooper LP, Thorpe PH, Byron O. The in vitro assembly of the EcoKI type I DNA restriction/modification enzyme and its in vivo implications. Biochemistry 1997;36:1065-76. [PMID: 9033396 DOI: 10.1021/bi9619435] [Citation(s) in RCA: 79] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
32
Roy R, Kumar A, Lee JC, Mitra S. The domains of mammalian base excision repair enzyme N-methylpurine-DNA glycosylase. Interaction, conformational change, and role in DNA binding and damage recognition. J Biol Chem 1996;271:23690-7. [PMID: 8798591 DOI: 10.1074/jbc.271.39.23690] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
33
Dryden DT, Sturrock SS, Winter M. Structural modelling of a type I DNA methyltransferase. NATURE STRUCTURAL BIOLOGY 1995;2:632-5. [PMID: 7552723 DOI: 10.1038/nsb0895-632] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
34
Dryden DT, Willcock DF, Murray NE. Mutational analysis of conserved amino-acid motifs in EcoKI adenine methyltransferase. Gene 1995;157:123-4. [PMID: 7607472 DOI: 10.1016/0378-1119(94)00630-b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
35
Chen A, Powell LM, Dryden DT, Murray NE, Brown T. Tyrosine 27 of the specificity polypeptide of EcoKI can be UV crosslinked to a bromodeoxyuridine-substituted DNA target sequence. Nucleic Acids Res 1995;23:1177-83. [PMID: 7739896 PMCID: PMC306828 DOI: 10.1093/nar/23.7.1177] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
36
Powell LM, Murray NE. S-adenosyl methionine alters the DNA contacts of the EcoKI methyltransferase. Nucleic Acids Res 1995;23:967-74. [PMID: 7731811 PMCID: PMC306793 DOI: 10.1093/nar/23.6.967] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
37
Belogurov AA, Delver EP. A motif conserved among the type I restriction-modification enzymes and antirestriction proteins: a possible basis for mechanism of action of plasmid-encoded antirestriction functions. Nucleic Acids Res 1995;23:785-7. [PMID: 7708494 PMCID: PMC306760 DOI: 10.1093/nar/23.5.785] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
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