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Matsushima Y, Ogawa Y, Nishi K, Nakata K. Concise synthesis of amino acid component of amicoumacins via dihydrooxazine formation through intramolecular conjugate addition. Biosci Biotechnol Biochem 2023; 87:131-137. [PMID: 36416802 DOI: 10.1093/bbb/zbac182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2022] [Accepted: 11/02/2022] [Indexed: 11/24/2022]
Abstract
Amicoumacins are a family of antibiotics with a variety of important bioactivities. A concise and efficient method was developed for synthesizing the amino acid component of amicoumacins via the corresponding dihydrooxazine intermediate. The dihydrooxazine ring was formed with complete stereoselectivity through an intramolecular conjugate addition of a δ-trichloroacetimidoyloxy-α,β-unsaturated ester, which was obtained from a known 4,6-O-p-methoxybenzylidene-protected d-glucose. The synthesis developed in this study can be used to synthesize the building blocks of amicoumacins and can likely be adapted for the synthesis of other types of molecules possessing dihydrooxazine rings or amino alcohol moieties.
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Affiliation(s)
- Yoshitaka Matsushima
- Department of Agricultural Chemistry, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, Japan
| | - Yukako Ogawa
- Department of Agricultural Chemistry, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, Japan
| | - Katsuya Nishi
- Department of Agricultural Chemistry, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, Japan
| | - Kyosuke Nakata
- Department of Agricultural Chemistry, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, Japan
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2
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Wang HH, Li Z, Feng YY, Yin GF, Shi T, He D, Wang XD, Wang Z. Application of Pd-Catalyzed C-H Alkylation Reaction in Total Syntheses of Twelve Amicoumacin-Type Natural Products. Org Lett 2021; 23:6956-6960. [PMID: 34424725 DOI: 10.1021/acs.orglett.1c02576] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Enantioselective total syntheses of 12 amicoumacin-type natural products are accomplished with a palladium(II)-catalyzed C-H alkylation as the key step to furnish the 3,4-dihydroisocoumarin scaffold. The target chemicals are assembled in a convergent protocol by merging 3,4-dihydroisocoumarin derived amine part with categories of acid segments that are efficiently prepared by chemoselective catalytic oxidation of chiral 1,2-dihydroxyethylfuran-2(5H)-ones. Afterward, the cytotoxicity of amicoumacins on five cancer cell lines and one normal cell line is investigated.
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Affiliation(s)
- Hui-Hong Wang
- State Key Laboratory of Applied Organic Chemistry, Lanzhou University, No. 222 South Tianshui Road, Lanzhou 730000, China
| | - Zhao Li
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Yi-Yue Feng
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Gao-Feng Yin
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Tao Shi
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Dian He
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Xiao-Dong Wang
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China
| | - Zhen Wang
- School of Pharmacy, Lanzhou University, No. 199 West Donggang Road, Lanzhou 730000, China.,State Key Laboratory of Applied Organic Chemistry, Lanzhou University, No. 222 South Tianshui Road, Lanzhou 730000, China
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Shablykina OV, Shilin SV, Moskvina VS, Ishchenko VV, Khilya VP. Progress in the Chemistry of Amino-Acid Derivatives of Isocoumarins and 3,4-Dihydroisocoumarins. Chem Nat Compd 2021. [DOI: 10.1007/s10600-021-03323-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Wu G, Wang T, Jiang Z, Liu S, Sun C. Asymmetric Total Synthesis of Hetiamacins A-F. ACS OMEGA 2021; 6:8239-8245. [PMID: 33817482 PMCID: PMC8015134 DOI: 10.1021/acsomega.0c06267] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 03/08/2021] [Indexed: 06/12/2023]
Abstract
Herein, we report a concise and stereoselective approach for the asymmetric total synthesis of hetiamacins A-F on the basis of the total synthesis of amicoumacin C, which could be synthesized from a known l-aspartic acid derivative. The synthesis of hetiamacin A was accomplished by an 11-step sequence that featured 1,3-oxazinane ring formation of amicoumacin B followed by amidation in one pot. Hetiamacins B-F were synthesized from amicoumacin A in only one step.
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Tsukaguchi S, Enomoto M, Towada R, Ogura Y, Kuwahara S. Unified Total Synthesis of Hetiamacins A-D. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901114] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shogo Tsukaguchi
- Graduate School of Agricultural Science; Tohoku University; 468-1 Aramaki-Aza-Aoba Aoba-ku, Sendai 980-0845 Japan
| | - Masaru Enomoto
- Graduate School of Agricultural Science; Tohoku University; 468-1 Aramaki-Aza-Aoba Aoba-ku, Sendai 980-0845 Japan
| | - Ryo Towada
- Graduate School of Agricultural Science; Tohoku University; 468-1 Aramaki-Aza-Aoba Aoba-ku, Sendai 980-0845 Japan
| | - Yusuke Ogura
- Graduate School of Agricultural Science; Tohoku University; 468-1 Aramaki-Aza-Aoba Aoba-ku, Sendai 980-0845 Japan
| | - Shigefumi Kuwahara
- Graduate School of Agricultural Science; Tohoku University; 468-1 Aramaki-Aza-Aoba Aoba-ku, Sendai 980-0845 Japan
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Park HB, Perez CE, Perry EK, Crawford JM. Activating and Attenuating the Amicoumacin Antibiotics. Molecules 2016; 21:molecules21070824. [PMID: 27347911 PMCID: PMC5055758 DOI: 10.3390/molecules21070824] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Revised: 06/07/2016] [Accepted: 06/20/2016] [Indexed: 01/10/2023] Open
Abstract
The amicoumacins belong to a class of dihydroisocoumarin natural products and display antibacterial, antifungal, anticancer, and anti-inflammatory activities. Amicoumacins are the pro-drug activation products of a bacterial nonribosomal peptide-polyketide hybrid biosynthetic pathway and have been isolated from Gram-positive Bacillus and Nocardia species. Here, we report the stimulation of a “cryptic” amicoumacin pathway in the entomopathogenic Gram-negative bacterium Xenorhabdus bovienii, a strain not previously known to produce amicoumacins. X. bovienii participates in a multi-lateral symbiosis where it is pathogenic to insects and mutualistic to its Steinernema nematode host. Waxmoth larvae are common prey of the X. bovienii-Steinernema pair. Employing a medium designed to mimic the amino acid content of the waxmoth circulatory fluid led to the detection and characterization of amicoumacins in X. bovienii. The chemical structures of the amicoumacins were supported by 2D-NMR, HR-ESI-QTOF-MS, tandem MS, and polarimeter spectral data. A comparative gene cluster analysis of the identified X. bovienii amicoumacin pathway to that of the Bacillus subtilis amicoumacin pathway and the structurally-related Xenorhabdus nematophila xenocoumacin pathway is presented. The X. bovienii pathway encodes an acetyltransferase not found in the other reported pathways, which leads to a series of N-acetyl-amicoumacins that lack antibacterial activity. N-acetylation of amicoumacin was validated through in vitro protein biochemical studies, and the impact of N-acylation on amicoumacin’s mode of action was examined through ribosomal structural analyses.
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Affiliation(s)
- Hyun Bong Park
- Department of Chemistry, Yale University, New Haven, CT 06520, USA.
- Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
| | - Corey E Perez
- Department of Chemistry, Yale University, New Haven, CT 06520, USA.
- Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
| | - Elena Kim Perry
- Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
- Department of Ecology & Evolutionary Biology, Yale University, New Haven, CT 06520, USA.
| | - Jason M Crawford
- Department of Chemistry, Yale University, New Haven, CT 06520, USA.
- Chemical Biology Institute, Yale University, West Haven, CT 06516, USA.
- Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT 06536, USA.
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Suzuki T, Nagasawa T, Enomoto M, Kuwahara S. Stereoselective total synthesis of amicoumacin C. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.02.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Turytsya VV, Ostapiuk YV, Matiychuk VV, Obushak MD. Synthesis of 3-Aryl/methoxycarbonyl-3,4-dihydroisocoumarin-6-carboxylic Acid Derivatives. J Heterocycl Chem 2014. [DOI: 10.1002/jhet.1975] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Victor V. Turytsya
- Department of Organic Chemistry; Ivan Franko National University of Lviv; Kyryla i Mefodiya St. 6 Lviv 79005 Ukraine
| | - Yuri V. Ostapiuk
- Department of Organic Chemistry; Ivan Franko National University of Lviv; Kyryla i Mefodiya St. 6 Lviv 79005 Ukraine
| | - Vasyl V. Matiychuk
- Department of Organic Chemistry; Ivan Franko National University of Lviv; Kyryla i Mefodiya St. 6 Lviv 79005 Ukraine
| | - Mykola D. Obushak
- Department of Organic Chemistry; Ivan Franko National University of Lviv; Kyryla i Mefodiya St. 6 Lviv 79005 Ukraine
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Enomoto M, Kuwahara S. Synthetic Studies on Bacilosarcins A and B, and Related Natural Products. J SYN ORG CHEM JPN 2010. [DOI: 10.5059/yukigoseikyokaishi.68.387] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Affiliation(s)
- Masaru Enomoto
- Laboratory of Applied Bioorganic Chemistry, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan
| | - Shigefumi Kuwahara
- Laboratory of Applied Bioorganic Chemistry, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan
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Burchak ON, Py S. Reductive cross-coupling reactions (RCCR) between CN and CO for β-amino alcohol synthesis. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.06.003] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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13
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Affiliation(s)
- Masaru Enomoto
- Laboratory of Applied Bioorganic Chemistry, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi, Aoba-ku, Sendai 981-8555, Japan
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Titanocene(III) chloride mediated radical-induced synthesis of 3,4-dihydroisocoumarins: synthesis of (±)-hydrangenol, (±)-phyllodulcin, (±)-macrophyllol and (±)-thunberginol G. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.09.075] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Shinkaruk S, Bennetau B, Babin P, Schmitter JM, Lamothe V, Bennetau-Pelissero C, Urdaci MC. Original preparation of conjugates for antibody production against Amicoumacin-related anti-microbial agents. Bioorg Med Chem 2008; 16:9383-91. [DOI: 10.1016/j.bmc.2008.08.017] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2008] [Revised: 07/31/2008] [Accepted: 08/04/2008] [Indexed: 10/21/2022]
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Katoh N, Nakahata T, Kuwahara S. Synthesis of novel antifungal phthalides produced by a wheat rhizosphere fungus. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.07.023] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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18
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Azumi M, Ogawa KI, Fujita T, Takeshita M, Yoshida R, Furumai T, Igarashi Y. Bacilosarcins A and B, novel bioactive isocoumarins with unusual heterocyclic cores from the marine-derived bacterium Bacillus subtilis. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.04.076] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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19
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Mandal SK, Roy SC. Radical-mediated synthesis of 3,4-dihydroisocoumarins: total synthesis of hydrangenol. Tetrahedron Lett 2007. [DOI: 10.1016/j.tetlet.2007.03.172] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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20
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Saeed A. Microwave‐Assisted Synthesis of cAMP Phosphodiesterase Inhibitor 8‐Hydroxy‐6,7‐dimethoxy‐3‐hydroxymethylisocoumarin. SYNTHETIC COMMUN 2007. [DOI: 10.1080/00397910701228778] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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21
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Schröder S, Schrey AK, Knoll A, Reiß P, Ziemer B, Koert U. Tetrahydropyran-Amino Acids: Novel Building Blocks for Gramicidin-Hybrid Ion Channels. European J Org Chem 2006. [DOI: 10.1002/ejoc.200600068] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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22
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Chrzanowska M, Dreas A. Addition Reaction of o-Toluamides with Chiral Auxiliary Derived from 2-Amino-1,3-propanediols to Imines. HETEROCYCLES 2006. [DOI: 10.3987/com-06-s(o)34] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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23
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Patil NT, Pahadi NK, Yamamoto Y. A new route for the synthesis of indolizidine (−)-209D: excellent diastereoselectivity in the intramolecular hydroamination of alkynes. Tetrahedron Lett 2005. [DOI: 10.1016/j.tetlet.2005.01.139] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Kurosaki Y, Fukuda T, Iwao M. Asymmetric synthesis of 3-substituted 3,4-dihydroisocoumarins via stereoselective addition of laterally lithiated chiral 2-(o-tolyl)oxazolines to aldehydes followed by diastereomer-selective lactonization. Tetrahedron 2005. [DOI: 10.1016/j.tet.2005.01.103] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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25
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Kotsuki H, Araki T, Miyazaki A, Iwasaki M, Datta PK. A New Enantioselective Total Synthesis of AI-77-B. Org Lett 1999. [DOI: 10.1021/ol990102y] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hiyoshizo Kotsuki
- Department of Material Science, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan
| | - Tomohiro Araki
- Department of Material Science, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan
| | - Aya Miyazaki
- Department of Material Science, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan
| | - Mitsuhiro Iwasaki
- Department of Material Science, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan
| | - Probal K. Datta
- Department of Material Science, Faculty of Science, Kochi University, Akebono-cho, Kochi 780-8520, Japan
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Ghosh AK, Cappiello J. Stereoselective Synthesis of Dihydroisocoumarin Moiety of Microbial Agent AI-77-B: a Diels-Alder Based Strategy. Tetrahedron Lett 1998; 39:8803-8806. [PMID: 30422131 DOI: 10.1016/s0040-4039(98)01977-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The dihydroisocoumarin fragment of the gastroprotective natural product AI-77-B has been synthesized in optically active form by using a regiospecific Diels-Alder reaction of 1-methoxy-1,3-cyclohexadiene and an acetylenic ester derivative, prepared stereoselectively from leucinal.
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Affiliation(s)
- Arun K Ghosh
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
| | - John Cappiello
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607
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Giambastiani G, Pacini B, Porcelloni M, Poli G. A New Palladium-Catalyzed Intramolecular Allylation to Pyrrolidin-2-ones(1). J Org Chem 1998; 63:804-807. [PMID: 11672076 DOI: 10.1021/jo971849+] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
A novel palladium(0)-catalyzed cyclization to 3,4-disubstituted pyrrolidin-2-ones has been developed. The new approach relies upon the concomitant generation of stabilized acetamide enolate anions and of a pi-allyl-palladium appendage, properly tethered by a nitrogen atom. Reaction conditions have been optimized for the methoxycarbonyl-stabilized model reaction [(Z)-2 --> 3] and then applied to other substrates. A broad range of acetamide anion stabilizers was shown to allow the desired intramolecular C-C bond formation (MeO(2)C, MeCO, NC, (EtO)(2)PO, PhSO(2)). The cyclizations gave exclusively 5-exo-trig ring closure, thereby affording gamma-lactams. All the cyclizations gave the corresponding 3,4-disubstituted pyrrolidin-2-ones with total diastereoselection. Complete trans preference was unequivocally demonstrated for the model reaction via a NOESY experiment.
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Affiliation(s)
- Giuliano Giambastiani
- Dipartimento di Chimica Organica "Ugo Schiff" and CNR Centro de Studio sulla Chimica e la Struttura dei Composti Eterocicli e loro Applicazioni, Via G. Capponi 9, I-50121, Firenze, Italy
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Superchi S, Minutolo F, Pini D, Salvadori P. Asymmetric Synthesis of the Dihydroisocoumarin Moiety of AI-77-B via Copper-Mediated Cross-Coupling and Sharpless Asymmetric Dihydroxylation. J Org Chem 1996; 61:3183-3186. [PMID: 11667183 DOI: 10.1021/jo951999p] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Stefano Superchi
- C.N.R. Centro Studi Macromolecole Stereordinate ed Otticamente Attive, Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento 35, I-56126 Pisa, Italy and Scuola Normale Superiore, piazza dei Cavalieri 7, I-56127 Pisa, Italy
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