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Panza M, Pistorio SG, Stine KJ, Demchenko AV. Automated Chemical Oligosaccharide Synthesis: Novel Approach to Traditional Challenges. Chem Rev 2018; 118:8105-8150. [PMID: 29953217 PMCID: PMC6522228 DOI: 10.1021/acs.chemrev.8b00051] [Citation(s) in RCA: 216] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Advances in carbohydrate chemistry have certainly made common oligosaccharides much more accessible. However, many current methods still rely heavily upon specialized knowledge of carbohydrate chemistry. The application of automated technologies to chemical and life science applications such as genomics and proteomics represents a vibrant field. These automated technologies also present opportunities for their application to organic synthesis, including that of the synthesis of oligosaccharides. However, application of automated methods to the synthesis of carbohydrates is an underdeveloped area as compared to other classes of biomolecules. The overarching goal of this review article is to present the advances that have been made at the interface of carbohydrate chemistry and automated technology.
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Affiliation(s)
- Matteo Panza
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Salvatore G. Pistorio
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Keith J. Stine
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
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Marinozzi M, Pertusati F, Serpi M. λ5-Phosphorus-Containing α-Diazo Compounds: A Valuable Tool for Accessing Phosphorus-Functionalized Molecules. Chem Rev 2016; 116:13991-14055. [DOI: 10.1021/acs.chemrev.6b00373] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Maura Marinozzi
- Dipartimento
di Scienze Farmaceutiche, Università degli Studi di Perugia, Via del Liceo 1, 06123 Perugia, Italy
| | - Fabrizio Pertusati
- School
of Pharmacy and Pharmaceutical Sciences, Cardiff University, King Edward VII Avenue, Cardiff CF10 3NB, United Kingdom
| | - Michaela Serpi
- School
of Pharmacy and Pharmaceutical Sciences, Cardiff University, King Edward VII Avenue, Cardiff CF10 3NB, United Kingdom
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Nigudkar SS, Demchenko AV. Stereocontrolled 1,2- cis glycosylation as the driving force of progress in synthetic carbohydrate chemistry. Chem Sci 2015; 6:2687-2704. [PMID: 26078847 PMCID: PMC4465199 DOI: 10.1039/c5sc00280j] [Citation(s) in RCA: 317] [Impact Index Per Article: 35.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2015] [Accepted: 03/05/2015] [Indexed: 01/21/2023] Open
Abstract
Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. Recent developments in stereoselective 1,2-cis glycosylation that have emerged during the past decade are surveyed herein. For detailed coverage of the previous achievements in the field the reader is referred to our earlier reviews: A. V. Demchenko, Curr. Org. Chem. , 2003, 7 , 35–79 and Synlett , 2003, 1225–1240.
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Affiliation(s)
- Swati S. Nigudkar
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry , University of Missouri – St. Louis , One University Blvd , St. Louis , MO 63121 , USA .
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Development of O–H insertion for the attachment of phosphonates to nucleosides; synthesis of α-carboxy phosphononucleosides. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.12.077] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
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Fuwa H, Noji S, Sasaki M. Studies toward the total synthesis of gambieric acids: stereocontrolled synthesis of a DEFG-ring model compound. J Org Chem 2010; 75:5072-82. [PMID: 20593761 DOI: 10.1021/jo1008146] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A stereocontrolled convergent synthesis of a DEFG-ring model compound of gambieric acids, highly potent antifungal marine polycyclic ether natural products, has been achieved based on Suzuki-Miyaura coupling. Conformational analysis of the model compound revealed that the nine-membered F-ring exists exclusively as a single stable conformer, as opposed to that of ciguatoxins.
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Affiliation(s)
- Haruhiko Fuwa
- Laboratory of Biostructural Chemistry, Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.
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Rodríguez MA, Boutureira O, Matheu MI, Díaz Y, Castillón S. Stereoselective Synthesis of 2-Deoxyglycosides from Sulfanyl Alkenes by Consecutive “One Pot” Cyclization and Glycosylation Reactions. European J Org Chem 2007. [DOI: 10.1002/ejoc.200601115] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Lu H, Su Z, Song L, Mariano PS. A novel approach to the synthesis of amino-sugars. Routes to selectively protected 3-amino-3-deoxy-aldopentoses based on pyridinium salt photochemistry. J Org Chem 2002; 67:3525-8. [PMID: 12003573 DOI: 10.1021/jo020038p] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A new approach for the synthesis of selectively blocked 3-amino-3-deoxyaldopentoses is presented. The strategy is based on employment of a pyridinium salt photocyclization-aziridine ring-opening sequence to prepare stereochemically defined, enantiomerically enriched aminocyclopentendiol derivatives. Ring-opening reactions transform these substances into terminally differentiated aminopolyols, which serve as precursors to the target amino-aldopentoses. The utility of this strategy is demonstrated by its application to the syntheses of protected derivatives of D- and L-3-amino-3-deoxyxylose, L-3-amino-3-deoxyarabinose, and a late-stage intermediate in a potential route to N-acetylneuraminic acid.
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Affiliation(s)
- Haiyan Lu
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, USA
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Abstract
A synthesis of an antagonist of E-selectin previously reported by a group at Novartis Pharma in Basel is described. An important feature involves the formation of an ether linkage based on a Rh(II)-catalyzed reaction. Stereocontrolled glycosylations rely on the anomeric activation of 2-pyridylthio carbonate as leaving group for the attachment of beta-D-galactopyranosyl and alpha-L-fucopyranosyl units on a common 1,5-anhydro D-glucitol scaffold.
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Affiliation(s)
- Stephen Hanessian
- Department of Chemistry, Université de Montréal, C.P. 6128, Succursale Centre-ville, Montréal, Québec H3C 3J7 Canada.
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Affiliation(s)
- G J Boons
- Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602
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Simart F, Brunel Y, Robin S, Rousseau G. A new method for the preparation of the 6,6 and 6,7 ring systems of bicyclic ethers. Tetrahedron 1998. [DOI: 10.1016/s0040-4020(98)00833-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Reggelin M, Weinberger H, Heinrich T. Metallated 2-Alkenyl Sulfoximines in Asymmetric Synthesis: Regio- and Stereoselective Synthesis of Highly Substituted Tetrahydrofurans. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/jlac.199719970912] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Mlynarski J, Banaszek A. A novel chemical synthesis of a 3-deoxy-d-arabino-heptulosonic acid 7-phosphate (DAHP) derivative and its 2-deoxy analogue. Carbohydr Res 1996. [DOI: 10.1016/s0008-6215(96)90122-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Miller DJ, Moody CJ. Synthetic applications of the O-H insertion reactions of carbenes and carbenoids derived from diazocarbonyl and related diazo compounds. Tetrahedron 1995. [DOI: 10.1016/0040-4020(95)00648-r] [Citation(s) in RCA: 191] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Mukaiyama T, Sasaki T, Iwashita E, Matsubara K. Stereoselective Synthesis ofN-Acetyl-α-neuraminosyl-galactose Disaccharide. CHEM LETT 1995. [DOI: 10.1246/cl.1995.455] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Bodenmüller A, Schmidt RR. Synthesis ofN-Acetylneuraminic Acid Derivatives and Structural Analogues. ACTA ACUST UNITED AC 1994. [DOI: 10.1002/jlac.199419940603] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Cox GG, Miller DJ, Moody CJ, Sie ERH, Kulagowski JJ. Rhodium-carbenoid mediated O-H insertion reactions. O-H insertion vs. H-abstraction and effect of catalyst. Tetrahedron 1994. [DOI: 10.1016/s0040-4020(01)81117-0] [Citation(s) in RCA: 52] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Vlahov IR, Vlahova PI, Schmidt RR. Highly stereoselective synthesis of β-glycosides of 3-deoxy-2-hexulosonates. ACTA ACUST UNITED AC 1993. [DOI: 10.1016/s0957-4166(00)86071-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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de Raadt A, Ferrier RJ. Syntheses and reactions of saturated and 2,3-unsaturated vinyl and 1′-substituted-vinyl glycosides. Carbohydr Res 1992. [DOI: 10.1016/0008-6215(92)84153-j] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Maier T, Schmidt RR. Synthesis of methyl 4-acetamido-2,4-dideoxy- d - glycero - d - galacto -octopyranoside, a decarboxyneuraminic acid analogue. Carbohydr Res 1992. [DOI: 10.1016/0008-6215(92)84183-s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Moody CJ, Sie ERH, Kulagowski JJ. Diazophosphonates in cyclic ether synthesis. Use of the intramolecular Wadsworth-Emmons reaction. Tetrahedron Lett 1991. [DOI: 10.1016/0040-4039(91)80451-b] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Mercury(II)-mediated routes to some side-chain functionalised 1,7-dioxaspiro[5.5]undecanes. Applications of Luche-Barbier chemoselective addition to ketoaldehydes. Tetrahedron 1991. [DOI: 10.1016/s0040-4020(01)96110-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Cardillo G, Orena M. Stereocontrolled cyclofunctionalizations of double bonds through heterocyclic intermediates. Tetrahedron 1990. [DOI: 10.1016/s0040-4020(01)81510-6] [Citation(s) in RCA: 382] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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A novel stereoselective synthesis of N-acetyl-α-neuraminosyl-galactose di-saccharide derivatives, using anomeric S-glycosyl xanthates. Carbohydr Res 1990. [DOI: 10.1016/0008-6215(90)84173-r] [Citation(s) in RCA: 87] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Briner K, Vasella A. Glycosylidene Carbenes a new approach to glycoside synthesis. Part 1. Preparation of glycosylidene-derived diaziridines and diazirines. Helv Chim Acta 1989. [DOI: 10.1002/hlca.19890720626] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Faivre V, Lila C, Saroli A, Doutheau A. Heterocyclisations des hydroxy-6 methoxy-2 hexene-2 et heptene-2 oates de methyle. Tetrahedron 1989. [DOI: 10.1016/s0040-4020(01)85792-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Synthesis of C-arabinofuranosyl compounds. Phosphonate and carboxylate isosteres of d-arabinose 1,5-bisphosphate. Carbohydr Res 1987. [DOI: 10.1016/s0008-6215(00)90891-7] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Julina R, Müller I, Vasella A, Wyler R. A synthesis of N-acetylneuraminic acid and [6-2H]-N-acetylneuraminic acid from N-acetyl-D-glucosamine. Carbohydr Res 1987; 164:415-32. [PMID: 3621240 DOI: 10.1016/0008-6215(87)80145-3] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
N-Acetylneuraminic acid (Neu5Ac) and [6-2H]-Neu5Ac were prepared from 2-acetamido-2-deoxy-D-glucose (N-acetyl-D-glucosamine). Then Henry reaction of a 1-deoxy-1-nitro derivative of GlcNAc (protected 1-C-nitroanhydro-D-glucitol) with cyclohexylidene-D-glyceraldehyde, followed by successive acetylation and reductive denitration with Bu3SnH, gave an anhydrononitol intermediate (6) diastereo-selectively in high yields. Debenzylidenation of 6 freed its distal primary carbinol group, which was subjected to catalytic oxidation followed by hydrolysis, esterification (diazomethane), and acetylation to give a protected methyl nononate. This ester was transformed into the known methyl N-acetyl-4,7,8,9-tetra-O-acetyl-2,3-dehydroneuraminate (15), which was identical with a sample prepared from Neu5Ac. Neu5Ac was obtained from 15 by bromoetherification (NBS, methanol) followed by reductive debromination with Bu3SnH and hydrolysis. Similarly, the [6-2H]-derivative of 15 was transformed into [6-2H]-Neu5Ac.
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