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Chen WA, Li HY, Sayyad A, Huang CY, Cheng WC. Synthesis of Nitrone-derived Pyrrolidine Scaffolds and Their Combinatorial Libraries to Develop Selective α-l-Rhamnosidase Inhibitors. Chem Asian J 2022; 17:e202200172. [PMID: 35535638 DOI: 10.1002/asia.202200172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 04/28/2022] [Indexed: 11/06/2022]
Abstract
A general and flexible approach toward the development of α-l-rhamnosidase (α-l-Rha-ase) inhibitors is described. Five enantiopure poly-substituted pyrrolidine-based scaffolds bearing the C1-aminomethyl moiety were designed and synthesized from five-membered cyclic nitrones. Each structurally diversified amide library of these scaffolds was rapidly generated via combinatorial parallel synthesis and applied for in-situ inhibition study against α-l-Rha-ase, allowing us to efficiently identify new inhibition hits. Surprisingly, all promising inhibitors are derived from the same scaffold 3. Among them, the most potent and selective inhibitor is pyrrolidine 19 with Ki =0.24 μM, approximately 24-fold more potent than the reference compound DAA (Ki =5.7 μM). It is the first study to comprehensively prepare pyrrolidine-based scaffolds and libraries for inhibition study against α-l-Rha-ase.
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Affiliation(s)
- Wei-An Chen
- Genomics Research Centre, Academia Sinica, 128, Section 2, Academia Road, 11529, Taipei, Taiwan
| | - Huang-Yi Li
- Genomics Research Centre, Academia Sinica, 128, Section 2, Academia Road, 11529, Taipei, Taiwan
| | - Ashik Sayyad
- Genomics Research Centre, Academia Sinica, 128, Section 2, Academia Road, 11529, Taipei, Taiwan
| | - Chun-Yen Huang
- Genomics Research Centre, Academia Sinica, 128, Section 2, Academia Road, 11529, Taipei, Taiwan
| | - Wei-Chieh Cheng
- Genomics Research Centre, Academia Sinica, 128, Section 2, Academia Road, 11529, Taipei, Taiwan
- Department of Chemistry, National Cheng-Kung University, 1, University Road, 701, Tainan, Taiwan
- Department of Applied Chemistry, National Chiayi University, 300, Xuefu Rd., East Dist., 600, Chiayi, Taiwan
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, 100 Shih-Chuan 1st Rd., 807, Kaohsiung, Taiwan
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2
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Strategy for designing selective α-l-rhamnosidase inhibitors: Synthesis and biological evaluation of l-DMDP cyclic isothioureas. Bioorg Med Chem 2017; 25:107-115. [DOI: 10.1016/j.bmc.2016.10.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Revised: 10/11/2016] [Accepted: 10/12/2016] [Indexed: 11/17/2022]
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3
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Liu Z, Yoshihara A, Kelly C, Heap JT, Marqvorsen MHS, Jenkinson SF, Wormald MR, Otero JM, Estévez A, Kato A, Fleet GWJ, Estévez RJ, Izumori K. 6-Deoxyhexoses froml-Rhamnose in the Search for Inducers of the Rhamnose Operon: Synergy of Chemistry and Biotechnology. Chemistry 2016; 22:12557-65. [PMID: 27439720 DOI: 10.1002/chem.201602482] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Zilei Liu
- Chemistry Research Laboratory; Department of Chemistry; University of Oxford; Oxford OX1 3TA UK
- Glycobiology Institute; Department of Biochemistry; University of Oxford; Oxford OX1 3QU UK
| | - Akihide Yoshihara
- International Institute of Rare Sugar Research and Education; Kagawa University; Miki Kagawa 761-0795 Japan
| | - Ciarán Kelly
- Centre for Synthetic Biology and Innovation; Department of Life Sciences; Imperial College; London SW7 2AZ UK
| | - John T. Heap
- Centre for Synthetic Biology and Innovation; Department of Life Sciences; Imperial College; London SW7 2AZ UK
| | - Mikkel H. S. Marqvorsen
- Chemistry Research Laboratory; Department of Chemistry; University of Oxford; Oxford OX1 3TA UK
| | - Sarah F. Jenkinson
- Chemistry Research Laboratory; Department of Chemistry; University of Oxford; Oxford OX1 3TA UK
| | - Mark R. Wormald
- Glycobiology Institute; Department of Biochemistry; University of Oxford; Oxford OX1 3QU UK
| | - José M. Otero
- Departamento de Química Orgánica and Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares; Universidade de Santiago de Compostela; 15782 Santiago de Compostela Spain
| | - Amalia Estévez
- Departamento de Química Orgánica and Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares; Universidade de Santiago de Compostela; 15782 Santiago de Compostela Spain
| | - Atsushi Kato
- Department of Hospital Pharmacy; University of Toyama; Toyama 930-0194 Japan
| | - George W. J. Fleet
- Chemistry Research Laboratory; Department of Chemistry; University of Oxford; Oxford OX1 3TA UK
| | - Ramón J. Estévez
- Departamento de Química Orgánica and Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares; Universidade de Santiago de Compostela; 15782 Santiago de Compostela Spain
| | - Ken Izumori
- International Institute of Rare Sugar Research and Education; Kagawa University; Miki Kagawa 761-0795 Japan
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4
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Harit VK, Ramesh NG. Amino-functionalized iminocyclitols: synthetic glycomimetics of medicinal interest. RSC Adv 2016. [DOI: 10.1039/c6ra23513a] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A review on the syntheses and biological activities of unnatural glycomimetics highlighting the effect of replacement of hydroxyl groups of natural iminosugars by amino functionalities is presented.
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Affiliation(s)
- Vimal Kant Harit
- Department of Chemistry
- Indian Institute of Technology Delhi
- New Delhi - 110016
- India
| | - Namakkal G. Ramesh
- Department of Chemistry
- Indian Institute of Technology Delhi
- New Delhi - 110016
- India
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5
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Soler A, Garrabou X, Hernández K, Gutiérrez ML, Busto E, Bujons J, Parella T, Joglar J, Clapés P. Sequential Biocatalytic Aldol Reactions in Multistep Asymmetric Synthesis: Pipecolic Acid, Piperidine and Pyrrolidine (Homo)Iminocyclitol Derivatives from Achiral Building Blocks. Adv Synth Catal 2014. [DOI: 10.1002/adsc.201400453] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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6
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The ‘mirror-image’ postulate as a guide to the selection and evaluation of pyrrolidines as α-l-fucosidase inhibitors. Carbohydr Res 2013; 367:29-32. [DOI: 10.1016/j.carres.2012.11.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2012] [Revised: 11/09/2012] [Accepted: 11/16/2012] [Indexed: 11/20/2022]
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7
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8
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Fu R, Du Y, Li ZY, Xu WX, Huang PQ. Asymmetric syntheses of 6-deoxyfagomin, d-deoxyrhamnojirimycin, and d-rhamnono-1,5-lactam. Tetrahedron 2009. [DOI: 10.1016/j.tet.2009.09.083] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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9
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Davis BG. A silver-lined anniversary of Fleet iminosugars: 1984–2009, from DIM to DRAM to LABNAc. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.tetasy.2009.03.013] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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10
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Alam MA, Kumar A, Vankar YD. Total Synthesis of L-(+)-Swainsonine and Other Indolizidine Azasugars from D-Glucose. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800649] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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11
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Ruiz M, Ruanova TM, Blanco O, Núñez F, Pato C, Ojea V. Diastereoselective Synthesis of Piperidine Imino Sugars Using Aldol Additions of Metalated Bislactim Ethers to Threose and Erythrose Acetonides. J Org Chem 2008; 73:2240-55. [DOI: 10.1021/jo702601z] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- María Ruiz
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
| | - Tania M. Ruanova
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
| | - Olga Blanco
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
| | - Fátima Núñez
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
| | - Cristina Pato
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
| | - Vicente Ojea
- Departamento de Química Fundamental, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira s/n, 15071 A Coruña, Spain
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12
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Kim JH, Curtis-Long MJ, Seo WD, Lee JH, Lee BW, Yoon YJ, Kang KY, Park KH. α-Rhamnosidase inhibitory activities of polyhydroxylated pyrrolidine. Bioorg Med Chem Lett 2005; 15:4282-5. [PMID: 16039852 DOI: 10.1016/j.bmcl.2005.06.051] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2005] [Revised: 06/18/2005] [Accepted: 06/20/2005] [Indexed: 11/19/2022]
Abstract
We designed and synthesized polyhydroxylated pyrrolidines 1-12 from L-tyrosine, L-phenylalanine, and D-tyrosine through iodine-mediated intramolecular cyclization followed by Woodward-Prevost reaction. The synthetic polyhydroxylated pyrrolidines were identified with structure-based inhibitory activity and selective inhibitory activity against alpha-rhamnosidase. (2S,3S,4R)-deacetyl anisomycin 7 was the best inhibitor among the 12 polyhydroxylated pyrrolidines because it possesses the same stereoconfiguration at C1, C2, C3 as alpha-L-rhamnopyranoside. An investigation into the nature of the inhibition showed that the synthetic pyrrolidines are competitive inhibitors. They also did not have remarkable inhibitory activity against seven glycosidases (alpha-glucosidase, alpha-mannosidase, alpha-amylase, beta-glucosidase, beta-galactosidase, beta-amylase, and invertase).
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Affiliation(s)
- Jin Hyo Kim
- Division of Applied Life Science (BK21 program), Department of Agricultural Chemistry, Institute of Agriculture and Life Sciences, Gyeongsang National University, Jinju 660-701, Republic of Korea
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13
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14
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Lindsay KB, Pyne SG. Asymmetric synthesis of (-)-swainsonine, (+)-1,2-di-epi-swainsonine, and (+)-1,2,8-tri-epi-swainsonine. J Org Chem 2002; 67:7774-80. [PMID: 12398502 DOI: 10.1021/jo025977w] [Citation(s) in RCA: 91] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The asymmetric synthesis of (-)-swainsonine via a nonchiral pool route that involves the Sharpless epoxidation to induce chirality is reported. The key steps involve vinyl epoxide aminolysis, ring-closing metathesis, and intramolecular N-alkylation to prepare the indolizidine ring and a highly diastereoselective cis-dihydroxylation using AD-mix-alpha. This synthetic strategy also allowed for the diastereoselective synthesis of (+)-1,2-di-epi-swainsonine and (+)-1,2,8-tri-epi-swainsonine.
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Affiliation(s)
- Karl B Lindsay
- Department of Chemistry, University of Wollongong, New South Wales 2522, Australia
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16
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Lillelund VH, Jensen HH, Liang X, Bols M. Recent developments of transition-state analogue glycosidase inhibitors of non-natural product origin. Chem Rev 2002; 102:515-53. [PMID: 11841253 DOI: 10.1021/cr000433k] [Citation(s) in RCA: 614] [Impact Index Per Article: 27.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Vinni H Lillelund
- Department of Chemistry, Aarhus University, DK-8000 Aarhus C, Denmark
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17
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Molecular requirements of imino sugars for the selective control of N-linked glycosylation and glycosphingolipid biosynthesis. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(99)00468-1] [Citation(s) in RCA: 114] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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18
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Jotterand N, Vogel P. Synthesis of a 5-Hydroxypiperidine-2,3,4,6-tetramethanol, a New 2,6-Dideoxy-2,6-iminoheptitol Derivative. J Org Chem 1999; 64:8973-8975. [PMID: 11674812 DOI: 10.1021/jo991228b] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Nathalie Jotterand
- Section de Chimie, Université de Lausanne, BCH, CH-1015 Lausanne-Dorigny, Switzerland
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19
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Davis BG, Brandstetter TW, Hackett L, Winchester BG, Nash RJ, Watson AA, Griffiths RC, Smith C, Fleet GW. Tetrazoles of manno- and rhamno-pyranoses: Contrasting inhibition of mannosidases by [4.3.0] but of rhamnosidase by [3.3.0] bicyclic tetrazoles. Tetrahedron 1999. [DOI: 10.1016/s0040-4020(99)00137-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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20
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Amino and hydroxy acid based diastereoselective synthesis of 1-deoxygalactostatin and its imino acid derivative. Tetrahedron Lett 1999. [DOI: 10.1016/s0040-4039(99)00107-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Synthesis of an eight carbon homologue of α-homomannojirimycin via a bicyclic aminolactone. ACTA ACUST UNITED AC 1998. [DOI: 10.1016/s0957-4166(98)00440-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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22
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Davis BG, Hull A, Smith C, Nash RJ, Watson AA, Winkler DA, Griffiths RC, Fleet GW. 5-epi-Deoxyrhamnojirimycin is a potent inhibitor of an α-l-rhamnosidase: 5-epi-deoxymannojirimycin is not a potent inhibitor of an α-d-mannosidase. ACTA ACUST UNITED AC 1998. [DOI: 10.1016/s0957-4166(98)00317-6] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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23
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Defoin A, Sarazin H, Sifferlen T, Strehler C, Streith J. Asymmetric synthesis of pentono- and 6-deoxyhexono-?-lactamsvia hetero-Diels-Alder reactions with nitroso dienophile. Helv Chim Acta 1998. [DOI: 10.1002/hlca.19980810550] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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24
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6-Deoxy-nojirimycin and 6-deoxy-gulo-nojirimycin in the racemic and d-series, d-fuco-nojirimycin and their 1-deoxyderivatives via hetero-Diels-Alder cycloadditions. Tetrahedron 1997. [DOI: 10.1016/s0040-4020(97)00898-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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25
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Synthesis of casuarines [pentahydroxylated pyrrolizidines] by sodium hydrogen telluride-induced cyclisations of azidodimesylates. Tetrahedron Lett 1997. [DOI: 10.1016/s0040-4039(97)01306-3] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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26
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Defoin A, Sifferlen T, Streith J, Dosbaâ I, Foglietti MJ. Potent glycosidase inhibitors via hetero Diels-Alder reactions: asymmetric synthesis of 5-methyl-trihydroxypyrrolidines. ACTA ACUST UNITED AC 1997. [DOI: 10.1016/s0957-4166(97)00008-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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