Kinetic complexity and repetitiveness ofFusarium graminearum nuclear DNA

SINE-like properties of a highly repetitive element in the genome of the obligate parasitic fungus Erysiphe graminis f.sp. hordei

The genomic organization of repetitive DNA in the obligate parasitic fungus Erysiphe graminis DC ex Mérat f.sp. hordei Em. Marchal was investigated using a cosmid library of the fungal genome. Three repetitive sequences were shown to be dispersed throughout the genome, and in a few cases they were found closely associated with long poly(dA) tracts. The most prevalent sequence is 903 bp long and accounts for at least 5% of the genome. Sequence analysis revealed features resembling mammalian Short INterspersed Elements (SINEs), namely the presence of a poly(dA) tail (33 bp), flanking direct repeats (13 bp), putative "A" and "B" blocks for RNA polymerase III binding; the corresponding transcript would be capable of forming a complex secondary structure.

Characterization of nuclear DNA in 12 species of Chlorella (Chlorococcales, Chlorophyta) by DNA reassociation

Strains of 12 different species of the genus Chlorella were analyzed for amount, reiteration frequency and kinetic complexity of chromosomal DNA components by C0t analysis. The resulting C0t curves reveal at least two different DNA components consisting of single copy DNA (up to 95%) and of repetitive DNA with complexities of 4.1 x 10(3) base pairs (bp) to approximately 11.7 x 10(3) bp and a reiteration frequency of 100-760. The total amount of repetitive DNA is less than 9% of the nuclear genome and similar in all strains studied. In contrast, the total kinetic complexity varies in a wide range from 1.26 x 10(7) bp to 8.08 x 10(7) bp which is mainly due to differences in the size of single copy DNA. The genome sizes in Chlorella seem not to be correlated with biochemical and physiological characteristics and therefore are unlikely to be useful as a taxonomical marker. A comparison of thermal denaturation profiles showed that the melting points of repetitive and single copy DNA differ by approximately 7 degrees C which may result from base mismatch and/or from a distinct base composition of the repetitive DNA.

Genetic distance in fungus genus Fusarium measured by comparative computer analysis of DNA thermal denaturation profiles

High resolution thermal denaturation profiles of different members of fungus genus Fusarium were compared with respect to the shape of their DNA melting curves. Quantitative comparison of the shape (areas under differential curves) of all thermal denaturation profiles was made. Thermal denaturation profiles can be used to derive the quantitative parameter, genetic distance, defined by Soumpasis (12). Based on such data of genetic distance a dendrogram and a genetic distance tree was constructed.

Phylogenetic relationships among Fusarium species measured by DNA reassociation

Deoxyribonucleic acid of 11 Fusarium species (F. acuminatum, F. arthrosporioides, F. avenaceum, F. culmorum, F. graminearum, F. heterosporum, F. moniliforme, F. oxysporum, F. sambucinum, F. semitectum, F. solani) have been compared with respect to their physical characteristics (Tm, % G + C), homology values and nucleotide sequence divergence. A phylogenetic tree based on physical characteristics, homology values and differences in percentage divergence of Fusarium species DNAs has been constructed.