A liquid-hybridization method for typing the Vp4 and Vp7 genes of bovine rotaviruses

Distribution of G (VP7) and P (VP4) genotypes of group A bovine rotaviruses from Turkish calves with diarrhea, 1997-2008

Group A rotaviruses are major enteric pathogens of calves. In order to investigate the genetic diversity of bovine rotaviruses (BRVs), a collection of 53 BRVs, detected from diarrheic calves from several Turkish geographical areas, between 1997 and 2008 was analyzed by RT-PCR for specificities of the outer capsid proteins VP7 (G type) and VP4 (P type), for the first time. Overall, G6 was the predominant G type, detected in 40/53 samples (75.4%), while P[11] was the predominant P type, detected in 52/53 samples (98.1%). The most common VP7/VP4 combinations were G6P[11] (60.3%) and G10P[11] (24.5%). Mixed infections were identified in 7/53 samples (13.2%). In the VP7 region the G6P[11] viruses were similar to other ones detected worldwide, forming an independent G6 lineage, distantly related to the G6 gene of the vaccine G6P[1] strain NCDV (90.1% amino acid identity), and suggesting that G6P[11] viruses represent a genetically stable BRV strain. The study of G and P type diversity is pivotal to understand the efficacy of the existing rotavirus vaccines and to provide the basis of future prophylaxis tools against rotaviral diarrhea of calves.

OCORRÊNCIA DOS GENÓTIPOS G E P DE ROTAVÍRUS DO GRUPO A EM BEZERROS DE REBANHOS DE CORTE NO ESTADO DE SÃO PAULO, BRASIL

RESUMO Foi determinada a ocorrência de rotavírus do grupo A e a caracterização molecular G e P de estirpes detectadas em bezerros de rebanhos de corte em propriedades rurais do Estado de São Paulo, Brasil. Foram analisadas amostras de fezes de 649 bezerros de 14 rebanhos de corte com idade entre 1 e 60 dias, independentemente da manifestação clínica de diarréia, colhidas de julho de 2003 a julho de 2004. Por meio das técnicas de ELISA e de eletroforese em gel de poliacrilamida (PAGE), determinou-se a ocorrência de rotavírus do grupo A em 64,3% (09/14) dos rebanhos e em 6,2% (40/649) dos animais. A maior freqüência de infecção foi detectada em animais com idade entre 16 e 30 dias (10,5%). Foram diagnosticados bezerros infectados por rotavírus tanto em animais com sinais clínicos de diarréia (25,8%; 22/85) quanto naqueles assintomáticos (3,2%; 18/ 564), existindo, porém, uma correlação entre a presença da infecção e a manifestação clínica da diarréia (p < 0,01). A análise do perfil do genoma do rotavírus por PAGE identificou sete eletroferótipos distintos, indicando grande diversidade genômica dos rotavírus na região estudada. A genotipagem pela reação em cadeia da polimerase (RT-PCR) das amostras de rotavírus revelou que as estirpes circulantes nos rebanhos eram G6P[5], G6P[11], G6P[5]P[11] e G10P[11].

Prevalence of G and P serotypes among equine rotaviruses in the faeces of diarrhoeic foals

Variant types of VP4 and VP7 gene segments of faecal rotaviruses from diarrhoeic foals were identified by restriction endonuclease digestion of reverse transcription/polymerase chain reaction (RT/PCR) products. The variants observed were correlated with serotypes by determination of the sequence of representative RT/PCR products (entire coding sequence for VP7 and the VP8 region of VP4) and comparison to published sequences of equine G and P serotype genes. Both G and P serotypes could be predicted for 95/116 (82%) strains, P serotype only for a further 8 (7%) strains and G serotype only for 1 (1%) strain. All characterised strains belonged to the same P serotype, P12, although minor sequence variations were observed. Of those strains able to be assigned to G serotypes, 84/96 (87.5%) belonged to serotype G3A, and 12/96 (12.5%) belonged to serotype G14. Comparison of G serotyping by ELISA to the RT/PCR method showed that serotyping equine rotaviruses by currently available ELISA methods was prone to error. This study establishes the restricted serotypic diversity of equine rotaviruses, and the significance of serotype G14.

The distribution of G and P types within isolates of bovine rotavirus in Japan

Various combinations of G type and P type were observed in 76 bovine rotavirus (BRV) strains isolated from 235 diarrheal calves in three prefectures of Japan in 1992-1994. The most prevalent combination was G6:P5 (46/76, 60.5%), followed by G10:P11 (13/76, 17.1%), G6:P11 (7/76, 9.2%) and G10:P5 (5/76, 6.6%). No G6:P1 strain of BRV was recognized from the isolates in the present study, though this type of BRV is well known as a suitable vaccine strain against BRV infection.

Bovine rotavirus V1005 a P5, not a P12, type like all viruses in a German survey

Bovine rotavirus (BRV) V1005, like 34 further cell culture-adapted strains in a 6-year survey in Upper Bavaria, Germany, is not a P12 but a P5 P-type rotavirus. The conclusion is based on dot blot hybridization with P1-, P5-, and P11-specific cDNAs, encompassing the VP8* region of major sequence diversity, and on PCR using P1-, P5-, and P11-specific primer pairs derived from the VP5* region of VP4 (VP5* and VP8*, respectively, are the larger and smaller tryptic cleavage products of VP4). Sequencing of the hyperdivergent region of VP4 confirmed the close relatedness of BRV V1005 to BRV UK, the P5 prototype virus.

VP4 typing of bovine and porcine group A rotaviruses by PCR

A PCR typing assay was developed to identify rotavirus P types (VP4 specificity) of bovine NCDV, UK, and B223 strains and porcine OSU and Gottfried strains. Thirty-nine human and animal strains representing all known, and some undefined, rotavirus P types were used to develop and evaluate the specificity of the method. No cross-amplification was observed. The PCR results agreed with previous characterizations by monoclonal antibodies, sequence analysis, and hybridization assays, except for the Gottfried strain, which showed a P type distinct from the human asymptomatic strains. Analysis of a small number of field specimens suggested a high level of VP4 polymorphism among porcine strains. The assay should be of value in typing field isolates and tracing interspecies infections.