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Kaminský J, Kapitán J, Baumruk V, Bednárová L, Bouř P. Interpretation of Raman and Raman Optical Activity Spectra of a Flexible Sugar Derivative, the Gluconic Acid Anion. J Phys Chem A 2009; 113:3594-601. [DOI: 10.1021/jp809210n] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jakub Kaminský
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, Faculty of Mathematics and Physics, Charles University, Institute of Physics, Ke Karlovu 5, 12116 Prague 2, Czech Republic, and Department of Chemistry of Natural Compounds, Institute of Chemical Technology, 166 28 Prague, Czech Republic
| | - Josef Kapitán
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, Faculty of Mathematics and Physics, Charles University, Institute of Physics, Ke Karlovu 5, 12116 Prague 2, Czech Republic, and Department of Chemistry of Natural Compounds, Institute of Chemical Technology, 166 28 Prague, Czech Republic
| | - Vladimír Baumruk
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, Faculty of Mathematics and Physics, Charles University, Institute of Physics, Ke Karlovu 5, 12116 Prague 2, Czech Republic, and Department of Chemistry of Natural Compounds, Institute of Chemical Technology, 166 28 Prague, Czech Republic
| | - Lucie Bednárová
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, Faculty of Mathematics and Physics, Charles University, Institute of Physics, Ke Karlovu 5, 12116 Prague 2, Czech Republic, and Department of Chemistry of Natural Compounds, Institute of Chemical Technology, 166 28 Prague, Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, 166 10 Prague, Czech Republic, Faculty of Mathematics and Physics, Charles University, Institute of Physics, Ke Karlovu 5, 12116 Prague 2, Czech Republic, and Department of Chemistry of Natural Compounds, Institute of Chemical Technology, 166 28 Prague, Czech Republic
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Callam CS, Singer SJ, Lowary TL, Hadad CM. Computational analysis of the potential energy surfaces of glycerol in the gas and aqueous phases: effects of level of theory, basis set, and solvation on strongly intramolecularly hydrogen-bonded systems. J Am Chem Soc 2001; 123:11743-54. [PMID: 11716731 DOI: 10.1021/ja011785r] [Citation(s) in RCA: 91] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The 126 possible conformations of 1,2,3-propanetriol (glycerol) have been studied by ab initio molecular orbital and density functional theory calculations in the gas and aqueous phases at multiple levels of theory and basis sets. The partial potential energy surface for glycerol as well as an analysis of the conformational properties and hydrogen-bonding trends in both phases have been obtained. In the gas phase at the G2(MP2) and CBS-QB3 levels of theory, the important, low-energy conformers are structures 100 and 95. In the aqueous phase at the SM5.42/HF/6-31G* level of theory, the lowest energy conformers are structures 95 and 46. Boltzmann distributions have been determined from these high-level calculations, and good agreement is observed when these distributions are compared to the available experimental data. These calculations indicate that the enthalpic and entropic contributions to the Gibbs free energy are important for an accurate determination of the conformational and energetic preferences of glycerol. Different levels of theory and basis sets were used in order to understand the effects of nonbonded interactions (i.e., intramolecular hydrogen bonding). The efficiency of basis set and level of theory in dealing with the issue of intramolecular hydrogen bonding and reproducing the correct energetic and geometrical trends is discussed, especially with relevance to practical computational methods for larger polyhydroxylated compounds, such as oligosaccharides.
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Affiliation(s)
- C S Callam
- Department of Chemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, USA
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4
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Chelli R, Gervasio FL, Gellini C, Procacci P, Cardini G, Schettino V. Density Functional Calculation of Structural and Vibrational Properties of Glycerol. J Phys Chem A 2000. [DOI: 10.1021/jp0000883] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Riccardo Chelli
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
| | - Francesco L. Gervasio
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
| | - Cristina Gellini
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
| | - Piero Procacci
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
| | - Gianni Cardini
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
| | - Vincenzo Schettino
- Università di Firenze, Dipartimento di Chimica, Via Gino Capponi 9, 50121 Firenze, Italy, and European Laboratory for Nonlinear Spectroscopy (LENS), Largo E. Fermi 2, 50125 Florence, Italy
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Teppen BJ, Cao M, Frey RF, van Alsenoy C, Miller DM, Schäfer L. An investigation into intramolecular hydrogen bonding: impact of basis set and electron correlation on the ab initio conformational analysis of 1,2-ethanediol and 1,2,3-propanetriol. ACTA ACUST UNITED AC 1994. [DOI: 10.1016/0166-1280(94)03809-y] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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7
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Caminati W, Di Bernardo S, Schäfer L, Kulp-Newton SQ, Siam K. Investigation of the molecular structure of catechol by combined microwave spectroscopy and AB initio calculations. J Mol Struct 1990. [DOI: 10.1016/0022-2860(90)80515-l] [Citation(s) in RCA: 70] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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9
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Vázquez S, Mosquera RA, Rios MA, Van Alsenoy C. AB initio gradient optimized molecular geometry and conformational analysis of 1,2-propanediol at the 4-21G level. ACTA ACUST UNITED AC 1989. [DOI: 10.1016/0166-1280(89)85101-2] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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11
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Vázquez S, Mosquera RA, Rios MA, Van Alsenoy C. Ab initio-gradient optimized molecular geometry and conformational analysis of 1,3-propanediol at the 4-21G level. ACTA ACUST UNITED AC 1988. [DOI: 10.1016/0166-1280(88)80036-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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12
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Van Alsenoy C, Siam K, Ewbank J, Schäfer L. Ab initio studies of structural features not easily amenable to experiment. ACTA ACUST UNITED AC 1986. [DOI: 10.1016/0166-1280(86)87063-4] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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13
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Schäfer L, Ewbank JD, Klimkowski V, Siam K, Van Alsenoy C. Predictions of relative structural trends from ab initio derived standard geometry functions. ACTA ACUST UNITED AC 1986. [DOI: 10.1016/0166-1280(86)80054-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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