Recent developments in downstream processing based on affinity interactions

Purification of wheat germ agglutinin using affinity flocculation with chitosan and a subsequent centrifugation or flotation step

Affinity purification is by tradition almost equivalent to affinity chromatography. In this report, a purification process is described in which the affinity interaction is performed in free solution. A precipitation step follows, thereby separating the affinity bound material from free. Chitosan is used as a natural polyligand rich in N-acetyl-D-glucosamine and is, because of its specificity, used in affinity precipitation of wheat germ agglutinin (WGA). The polyligand is soluble at pH below 6.5 and precipitates at higher values, thus coprecipitating associated WGA. A process was developed where the overall yield of WGA was 70% and the final product gave a single band on SDS-PAGE. The process was also run on a larger scale, where even affinity flotation was included in the study as an alternative way to harvest the precipitate. Scaling up the affinity precipitation was a very easy task.

The affinity concept in bioseparation: Evolving paradigms and expanding range of applications

The meaning of the word affinity in the context of protein separation has undergone evolutionary changes over the years. The exploitation of molecular recognition phenomenon is no longer limited to affinity chromatography modes. Affinity based separations today include precipitation, membrane based purification and two-phase/three-phase extractions. Apart from the affinity ligands, which have biological relationship (in vivo) with the target protein, a variety of other ligands are now used in the affinity based separations. These include dyes, chelated metal ions, peptides obtained by phage display technology, combinatorial synthesis, ribosome display methods and by systematic evolution of ligands by exponential enrichment (SELEX). Molecular modeling techniques have also facilitated the designing of biomimetic ligands. Fusion proteins obtained by recombinatorial methods have emerged as a powerful approach in bioseparation. Overexpression in E. coli often result in inactive and insoluble inclusion bodies. A number of interesting approaches are used for simultaneous refolding and purification in such cases. Proteomics also needs affinity chromatography to reduce the complexity of the system before analysis by electrophoresis and mass spectrometry are made. At industrial level, validation, biosafety and process hygiene are also important aspects. This overview looks at these evolving paradigms and various strategies which utilize affinity phenomenon for protein separations.

Affinity-based reverse micellar extraction and separation (ARMES): a facile technique for the purification of peroxidase from soybean hulls

A new technique for the purification of proteins has been developed which combines the high selectivity of affinity interaction with the scalability and ease of operation of liquid-liquid extraction. The approach is called affinity-based reverse micellar extraction and separation (ARMES). The salient features of ARMES include the following: (1) intraphasic interaction between the ligand and ligate which provides for high ligand utilization; (2) no chemical modification of the ligand is needed; and (3) ease of operation and inherent scalability due to the use of liquid-liquid extraction. This technique has been used to purify the peroxidase from soybean hulls using the lectin concanavalin A (con A) as a sugar-binding affinity ligand. A purification factor of 30 is achieved to provide a nearly pure peroxidase solution (as determined by HPLC and SDS-PAGE) with nearly complete regeneration of the con A ligand. We propose that ARMES will be useful in the facile purification of complex biomolecules such as glycoform protein variants using lectins as affinity ligands and proteins of therapeutic importance using antibodies as affinity ligands.

Protein separation and purification in neat dimethyl sulfoxide

Pure DMSO (instead of water) is used as the reaction medium for protein separations. It is shown that common extracellular proteins (i) have high solubility in DMSO (1-50 mg/ml), (ii) do not irreversibly inactivate in this solvent, and (iii) can adsorb onto carboxymethyl cellulose in DMSO and be subsequently fully desorbed in this solvent by inorganic salts. Ion-exchange chromatography on this resin in DMSO has been used to purify bovine pancreatic trypsin and to separate it from hen egg-white lysozyme in their mixture. Another approach to protein separation in DMSO, fractional precipitation with ethyl acetate (which does not dissolve proteins), has been verified with a mixture of bovine pancreatic chymotrypsinogen and chicken egg ovalbumin.

Partitioning of β-galactosidase fusion proteins in PEG/potassium phosphate aqueous two-phase systems

Four different beta-galactosidase fusion proteins have been partitioned in poly(ethylene glycol) (PEG) 4000/potassium phosphate aqueous two-phase systems. The partition coefficients (K) of staphylococcal protein A-beta-galactosidase (SpA beta gal) (K = 3.5) and staphylococcal protein A-streptococcal protein G-beta-galactosidase (AG beta gal) (K = 2.8) were compared with the partition coefficients of their constituent molecules, beta-galactosidase, SpA, and protein AG. It was found that by fusing beta-galactosidase to the smaller proteins SpA and protein AG, their partition coefficients were increased four to five times. Experimental data were fitted into, and found to agree with, the Albertsson partition model of interacting molecules. The compatibility with PEG and potassium phosphate of beta-galactosidase, SpA, and two different versions of the SpA beta gal protein, displayed as precipitation curves, showed a relationship to the protein partition coefficients in PEG/potassium phosphate systems. High solubility in one phase component was accompanied by preferential partitioning to the phase rich in the same component in the PEG/potassium phosphate system. Also, a changed linker region in SpA beta gal resulted in a more soluble protein. This, together with the improved K values of the target proteins by fusion, shows that it is possible to use beta-galactosidase as an affinity handle.

An overview of continuous protein purification processes

As the sphere of influence of recombinant technology moves away from the laboratory bench, towards product commercialization, development of manufacturing and large scale process technology is becoming a major challenge and determinant for commercial success. The challenge is particularly acute for protein purification process development where protein purification costs tend to dominate overall process economics. The primary objective for process scale purification is to minimize cost for a purified product which meets specifications. Continuous processes may be used to facilitate achievement of the overall objectives. This review critically examines the use of continuous processing for protein purification and recovery operations. The processes have been divided into three general areas: adsorptive and chromatographic, electrophoretic, and extractive. Consideration is given to the operational advantages and limitations of the reviewed processes.