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Koczoń P, Hołaj-Krzak JT, Palani BK, Bolewski T, Dąbrowski J, Bartyzel BJ, Gruczyńska-Sękowska E. The Analytical Possibilities of FT-IR Spectroscopy Powered by Vibrating Molecules. Int J Mol Sci 2023; 24:ijms24021013. [PMID: 36674526 PMCID: PMC9860999 DOI: 10.3390/ijms24021013] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Revised: 12/30/2022] [Accepted: 01/01/2023] [Indexed: 01/06/2023] Open
Abstract
This paper discusses the state of advancement in the development of spectroscopic methods based on the use of mid (proper) infrared radiation in the context of applications in various fields of science and technology. The authors drew attention to the most important solutions specific to both spectroscopy itself (ATR technique) and chemometric data processing tools (PCA and PLS models). The objective of the current paper is to collect and consistently present information on various aspects of FT-IR spectroscopy, which is not only a well-known and well-established method but is also continuously developing. The innovative aspect of the current review is to show FT-IR's great versatility that allows its applications to solve and explain issues from both the scientific domain (e.g., hydrogen bonds) and practical ones (e.g., technological processes, medicine, environmental protection, and food analysis). Particular attention was paid to the issue of hydrogen bonds as key non-covalent interactions, conditioning the existence of living matter and determining the number of physicochemical properties of various materials. Since the role of FT-IR spectroscopy in the field of hydrogen bond research has great significance, a historical outline of the most important qualitative and quantitative hydrogen bond theories is provided. In addition, research on selected unconventional spectral effects resulting from the substitution of protons with deuterons in hydrogen bridges is presented. The state-of-the-art and originality of the current review are that it presents a combination of uses of FT-IR spectroscopy to explain the way molecules vibrate and the effects of those vibrations on macroscopic properties, hence practical applications of given substances.
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Affiliation(s)
- Piotr Koczoń
- Department of Chemistry, Institute of Food Sciences, Warsaw University of Life Sciences, 02-776 Warsaw, Poland
| | - Jakub T. Hołaj-Krzak
- Institute of Technology and Life Sciences—National Research Institute, 3 Hrabska Ave., Falenty, 05-090 Raszyn, Poland
| | - Bharani K. Palani
- Department of Chemistry, Institute of Food Sciences, Warsaw University of Life Sciences, 02-776 Warsaw, Poland
| | - Tymoteusz Bolewski
- Institute of Technology and Life Sciences—National Research Institute, 3 Hrabska Ave., Falenty, 05-090 Raszyn, Poland
| | - Jarosław Dąbrowski
- Institute of Technology and Life Sciences—National Research Institute, 3 Hrabska Ave., Falenty, 05-090 Raszyn, Poland
| | - Bartłomiej J. Bartyzel
- Department of Morphological Sciences, Institute of Veterinary Medicine, Warsaw University of Life Sciences, 02-776 Warsaw, Poland
| | - Eliza Gruczyńska-Sękowska
- Department of Chemistry, Institute of Food Sciences, Warsaw University of Life Sciences, 02-776 Warsaw, Poland
- Correspondence:
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Rekik N, Salman S, Farooq U, Nakajima T, Wojcik MJ, Blaise P. Towards accurate infrared spectral density of weak H-bonds in absence of relaxation mechanisms. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 207:197-208. [PMID: 30240981 DOI: 10.1016/j.saa.2018.09.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 08/04/2018] [Accepted: 09/01/2018] [Indexed: 06/08/2023]
Abstract
Following the previous theoretical developments to completely reproduce the IR spectra of weak hydrogen bond complexes within the framework of the linear response theory (LRT), the quantum theory of the high stretching mode spectral density (SD) of weak H-bonds is reconsidered. Within the LRT theory, the SD is the one sided Fourier transform of the autocorrelation function (ACF) of the high stretching mode dipole moment operator. In order to provide more accurate theoretical bandshapes, we have explored the equivalence between the SDs given in previous studies with respect to a new quantum one, and revealed that in place of the basic equations used in the precedent works for which the SD IOld(ω)=2Re∫0∞GOld(t)e-iωtdt where the ACF GOld(t) = ⟨μ(0)μ(t)+⟩ = tr {ρ {μ(0)} {μ(t)}+}, one can use a new expression for the SD, given by INew(ω)=2ωRe∫0∞GNew(t)e-iωtdt where GNew(t)=μ(0)μ(t)+=1βtrρB∫0βμ(0)μ(t+iλℏ)+dλ. Here ρB is the Boltzmann density operator, μ(0) the dipole moment operator at initial time and μ(t) the dipole moment operator at time t in the Heisenberg picture, ℏ is the Planck constant, β is the inverse of the Boltzmann factor kBT where T is the absolute temperature and kB the Boltzmann constant. Using this formalism, we demonstrated that the new quantum approach gives the same final SD as used by previous models, and reduces to the Franck-Condon progression appearing in the Maréchal and Witkowski's pioneering approach when the relaxation mechanisms are ignored. Results of this approach shed light on the equivalence between the quantum and classical IR SD approaches for weak H-bonds in absence of medium surroundings effect, which has been a subject of debate for decades.
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Affiliation(s)
- Najeh Rekik
- Physics Department, Faculty of Science, University of Ha'il, Saudi Arabia; Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.
| | - Saed Salman
- Physics Department, College of Science, King Faisal University, Al Ahsa 31982, Saudi Arabia
| | - Umer Farooq
- Physics Department, Faculty of Science, University of Ha'il, Saudi Arabia
| | - Takahito Nakajima
- RIKEN Advanced Institute for Computational Science, 7-1-26 Minatojima-minami-machi, Chuo-ku, Kobe, Hyogo 650-0047, Japan
| | - Marek J Wojcik
- Laboratory of Molecular Spectroscopy, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, Krakow 30-387, Poland
| | - Paul Blaise
- Laboratoire de Mathématiques et Physique (LAMPS), Université de Perpignan Via Domitia (UPVD), 52 Av. Paul Alduy, Perpignan Cedex 66860, France
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Rekik N, Suleiman J, Blaise P, Wojcik MJ. Equivalence between the Classical and Quantum IR Spectral Density Approaches of Weak H-Bonds in the Absence of Damping. J Phys Chem A 2018; 122:2108-2115. [PMID: 29436830 DOI: 10.1021/acs.jpca.8b00269] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The aim of this paper is to overhaul the quantum elucidation of the spectral density (SD) of weak H-bonds treated without taking into account any of the damping mechanisms. The reconsideration of the SD is performed within the framework the linear response theory. Working in the setting of the strong anharmonic coupling theory and the adiabatic approximation, the simplified expression of the classical SD, in the absence of dampings, is equated to be ICl(ω) = Re[∫0∞GCl(t)e-iΩt dt] in which the classical-like autocorrelation function (ACF), GCl(t), is given by GCl(t) = tr{ρ(β){μ(0)}{μ(t)}†}. With this consideration, we have shown that the classical SD is equivalent to the line shape obtained by F(ω) = ΩICl(ω), which in turn is equivalent to the quantum SD given by IQu(ω) = Re[∫0∞GQu(t)e-iΩt dt], where GQu(t) is the corresponding quantum ACF having for expression GQu(t) = (1/β) tr{ρ∫0β[μ(0)}{μ(t + iλℏ)}† dλ}. Thus, we have shown that for weak H-bonds dealt without dampings, the SDs obtained by the quantum approaches are equivalent to the SDs geted by the classical approach in which the incepation ACF is, however, of quantum nature and where the line shape is the Fourier transform of the ACF times the angular frequency. It is further shown that the classical approach dealing with the SD of weak H-bonds leads identically to the result found by Maréchal and Witkowski in their pioneering quantum treatment where they ignored the linear response theory and dampings.
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Affiliation(s)
- Najeh Rekik
- Physics Department, Faculty of Science, University of Ha'il , Kingdom of Saudi Arabia.,Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Jamal Suleiman
- Physics Department, College of Science, King Faisal University , Al Ahsa 31982, Kingdom of Saudi Arabia
| | - Paul Blaise
- Laboratoire de Mathématiques et Physique (LAMPS), Université de Perpignan Via Domitia (UPVD) , 52 Av. Paul Alduy, 66860 Perpignan Cedex, France
| | - Marek J Wojcik
- Laboratory of Molecular Spectroscopy, Faculty of Chemistry, Jagiellonian University , Gronostajowa 2, 30-387 Krakow, Poland
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D’Amico F, Bencivenga F, Camisasca G, Gessini A, Principi E, Cucini R, Masciovecchio C. Thermodynamic hydration shell behavior of glycine. J Chem Phys 2013; 139:015101. [DOI: 10.1063/1.4812283] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
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Rekik N, Wójcik MJ. On the influence of electrical anharmonicity on infrared bandshape of hydrogen bond. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.02.018] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Rekik N, Oujia B, Wójcik MJ. Theoretical infrared spectral density of H-bonds in liquid and gas phases: Anharmonicities and dampings effects. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2008.05.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Henri-Rousseau O, Blaise P. The VX-HLine Shapes of Centrosymmetric Cyclic Dimers Involving Weak Hydrogen Bonds. ADVANCES IN CHEMICAL PHYSICS 2008. [DOI: 10.1002/9780470259498.ch5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2023]
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Henri-Rousseau O, Blaise P. The Infrared Spectral Density of Weak Hydrogen Bonds within the Linear Response Theory. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141625.ch1] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Abramczyk H. Intramolecular dipole-dipole coupling model for vibrational dephasing in non-rigid molecules Application for 2-oxo-l,3,2-dioxaphosphorinanes. Mol Phys 2006. [DOI: 10.1080/00268978800100243] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Blaise P, El-Amine Benmalti M, Henri-Rousseau O. Theoretical interpretation of the line shape of crystalline adipic acid. J Chem Phys 2006; 124:024514. [PMID: 16422618 DOI: 10.1063/1.2148961] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A general quantum theoretical approach of the upsilon(X-H) IR line shape of cyclic dimers of weakly H-bonded species in the crystal state is proposed. In this model, the adiabatic approximation (allowing to separate the high-frequency motion from the slow one of the H-bond bridge) is performed for each separate H-bond bridge of the dimer and a strong nonadiabatic correction is introduced into the model via the resonant exchange between the fast-mode excited states of the two moieties. Quantum indirect damping and Fermi resonances are taken into account. The present model reduces satisfactorily to many models in the literature dealing with more special situations. It has been applied to the cyclic dimers of adipic acid in the crystal phase. It correctly fits the experimental line shape of the hydrogenated compound and predicts satisfactorily the evolution in the line shapes with temperature and the change in the line shape with isotopic substitution.
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Affiliation(s)
- Paul Blaise
- Laboratoire de Mathématiques et Physique des Systèmes (MEPS), E.A. 3680, Université de Perpignan, 52 Avenue de Villeneuve, 66860 Perpignan Cedex, France.
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Blaise P, Déjardin PM, Henri-Rousseau O. Infrared spectra of weak hydrogen bonds and indirect damping. On the deep connection between the quantum model and the semi-classical one of Robertson and Yarwood. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2005.01.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Kedžuch S, Noga * J, Valiron P. Universal R12 suited basis sets for atoms from lithium to fluorine. Mol Phys 2005. [DOI: 10.1080/00268970412331332952] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Blaise P, Wojcik MJ, Henri-Rousseau O. Theoretical interpretation of the line shape of the gaseous acetic acid cyclic dimer. J Chem Phys 2005; 122:064306. [PMID: 15740371 DOI: 10.1063/1.1847491] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A general quantum theoretical approach of the nu(X-H) IR line shape of cyclic dimers of weakly H-bonded species in the gas phase is proposed. In this model, the adiabatic approximation (allowing to separate the high frequency motion from the slow one of the H-bond bridge), is performed for each separate H-bond bridge of the dimer and a strong nonadiabatic correction is introduced into the model via the resonant exchange between the fast mode excited states of the two moieties. The present model reduces satisfactorily to many models in the literature dealing with more special situations. It has been applied to the cyclic dimers (CD(3)CO(2)H)(2) and (CD(3)CO(2)D)(2) in the gas phase. It correctly fits the experimental line shape of the hydrogenated compound and predict satisfactorily the evolution in the line shapes, to the deuterated one by reducing simply the angular frequency of the H-bond bridge and the anharmonic coupling parameter by the factor 1/ square root of 2.
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Affiliation(s)
- Paul Blaise
- Laboratoire de Mathématiques et Physique des Systèmes (MEPS), EA 3680, Université de Perpignan, 52 avenue de Villeneuve 66860 Perpignan cedex, France.
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IR spectral density of weak H-bonds involving quantum direct and indirect dampings. Beyond the adiabatic and harmonic approximations. J Mol Struct 2004. [DOI: 10.1016/j.molstruc.2003.09.017] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Madsen D, Stenger J, Dreyer J, Hamm P, Nibbering ETJ, Elsaesser T. Femtosecond Mid-Infrared Pump–Probe Study of Wave Packet Motion in a Medium-Strong Intramolecular Hydrogen Bond. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2002. [DOI: 10.1246/bcsj.75.909] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Spectral density of medium strength H-bonds. Direct damping and intrinsic anharmonicity of the slow mode. Beyond adiabatic approximation. Chem Phys 2000. [DOI: 10.1016/s0301-0104(00)00093-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Kulbida A, Nosov A, Koll A, Rospenk M, Sobczyk L. Environment effect on the IR behaviour of intramolecular hydrogen bonds in ortho Mannich bases. J Mol Struct 1991. [DOI: 10.1016/0022-2860(91)80032-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Ir spectroscopic investigation of solvent effects and H-bond formation on the CD stretching frequency of chloroform. J Mol Struct 1990. [DOI: 10.1016/0022-2860(90)80508-h] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Wood KA, Snyder RG, Strauss HL. Analysis of the vibrational bandwidths of alkane–urea clathrates. J Chem Phys 1989. [DOI: 10.1063/1.457571] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Abramczyk H, Samios D, Dorfmüller T. Vibrational relaxation of proton acceptor in H-bonded complexes. J Mol Liq 1987. [DOI: 10.1016/0167-7322(87)80044-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Abramczyk H. Interaction-induced contribution to changes in the infrared spectrum of hydrogen-bonded complexes. Chem Phys 1987. [DOI: 10.1016/0301-0104(87)80087-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Johnson WG, Oxtoby DW. The effect of dynamics on band shapes of hydrogen bonded complexes in solution. J Chem Phys 1987. [DOI: 10.1063/1.453285] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Czarnik-Matusewicz B, Hawranek J. I.r. bandshapes of weakly H-bonded systems. Vibrational dephasing in complexes of tertiary alcohols with diethyl ether. ACTA ACUST UNITED AC 1987. [DOI: 10.1016/0584-8539(87)80221-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Broda M, Hawranek J. Infrared bandshapes of intramolecularly H-bonded systems—III. Vibrational dephasing of vs (OH) in 2,6-dichlorophenol. ACTA ACUST UNITED AC 1987. [DOI: 10.1016/0584-8539(87)80142-3] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Abramczyk H, Reimschūssel W. Vibrational relaxation and frequency shifts of proton acceptors in hydrogen-bonded systems. Benzonitrile in solutions. Chem Phys 1985. [DOI: 10.1016/0301-0104(85)85007-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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