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Ruggiero MT, Zeitler JA. Resolving the Origins of Crystalline Anharmonicity Using Terahertz Time-Domain Spectroscopy and ab Initio Simulations. J Phys Chem B 2016; 120:11733-11739. [PMID: 27766874 DOI: 10.1021/acs.jpcb.6b10248] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Anharmonicity has been shown to be an important piece of the fundamental framework that dictates numerous observable phenomena. In particular, anharmonicity is the driving force of vibrational relaxation processes, mechanisms that are integral to the proper function of numerous chemical processes. However, elucidating its origins has proven difficult due to experimental and theoretical challenges, specifically related to separating the anharmonic contributions from other unrelated effects. While no one technique is particularly suited for providing a complete picture of anharmonicity, by combining multiple complementary methods such a characterization can be made. In this study the role of individual atomic interactions on the anharmonic properties of crystalline purine, the building block of many DNA and RNA nucleobases, is studied by experimental terahertz time-domain spectroscopy and first-principles density functional theory (DFT) and ab initio molecular dynamics simulations (AIMD). In particular, the detailed vibrational information provided by the DFT calculations is used to interpret the atomic origins of anharmonic-related effects as determined by the AIMD calculations, which are in good agreement with the experimental data. The results highlight that anharmonicity is especially pronounced in the intermolecular interactions, particularly along the amine hydrogen bond coordinate, and yields valuable insight into what is similarly observed complex biosystems and crystalline solids.
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Affiliation(s)
- Michael T Ruggiero
- Department of Chemical Engineering and Biotechnology, University of Cambridge , Philippa Fawcett Drive, Cambridge CB3 0AS, United Kingdom
| | - J Axel Zeitler
- Department of Chemical Engineering and Biotechnology, University of Cambridge , Philippa Fawcett Drive, Cambridge CB3 0AS, United Kingdom
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Dutton CC, Dows DA, Eikey R, Evans S, Beaudet RA. The Rovibrational Spectrum and Structure of the Weakly Bound CO2−CS2 Complex. J Phys Chem A 1998. [DOI: 10.1021/jp980874w] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- C. C. Dutton
- Department of Chemistry, University of Southern California, University Park, Los Angeles, California 90089-0482
| | - D. A. Dows
- Department of Chemistry, University of Southern California, University Park, Los Angeles, California 90089-0482
| | - R. Eikey
- Department of Chemistry, University of Southern California, University Park, Los Angeles, California 90089-0482
| | - S. Evans
- Department of Chemistry, University of Southern California, University Park, Los Angeles, California 90089-0482
| | - R. A. Beaudet
- Department of Chemistry, University of Southern California, University Park, Los Angeles, California 90089-0482
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Maté B, Tejeda G, Montero S. Raman spectroscopy of supersonic jets of CO2: Density, condensation, and translational, rotational, and vibrational temperatures. J Chem Phys 1998. [DOI: 10.1063/1.475660] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Vigiani A, Cardini G, Schettino V. A molecular dynamics study of the CO2/NaCl(001) system. J Chem Phys 1997. [DOI: 10.1063/1.474094] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
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Procacci P, Signorini GF. Efficient calculation of high-order self-energy corrections to phonon linewidths: Application to alpha -nitrogen. PHYSICAL REVIEW. B, CONDENSED MATTER 1993; 47:11124-11133. [PMID: 10005246 DOI: 10.1103/physrevb.47.11124] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Procacci P. Equation of motion for the Green's function in anharmonic solids. PHYSICAL REVIEW. B, CONDENSED MATTER 1992; 46:6141-6149. [PMID: 10002298 DOI: 10.1103/physrevb.46.6141] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Cardini G, Righini R, Löwen HW, Jodl H. Sideband modeling in molecular crystals N2 and CO2. J Chem Phys 1992. [DOI: 10.1063/1.462669] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Procacci P, Cardini G, Righini R, Califano S. Anharmonic lattice dynamics and computer simulation for simple model systems. PHYSICAL REVIEW. B, CONDENSED MATTER 1992; 45:2113-2125. [PMID: 10001727 DOI: 10.1103/physrevb.45.2113] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Becucci M, Castellucci E, Foggi P, Califano S, Dows DA. Temperature dependence of vibrational relaxation processes in sulfur crystals: Effect of isotopic impurities. J Chem Phys 1992. [DOI: 10.1063/1.462424] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Signorini GF, Righini R, Schettino V. Lattice dynamics of the orthorhombic phase of KClO4: Ewald's method in molecular coordinates. Chem Phys 1991. [DOI: 10.1016/0301-0104(91)80076-t] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Torre R, Righini R, Angeloni L, Califano S. Picosecond measurements of relaxation of internal modes in crystalline benzene as a function of temperature. J Chem Phys 1990. [DOI: 10.1063/1.458884] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Bogani F, Cardini G, Schettino V, Tasselli PL. Vibrational relaxation and dephasing of two-phonon bound states in molecular crystals. PHYSICAL REVIEW. B, CONDENSED MATTER 1990; 42:2307-2324. [PMID: 9995678 DOI: 10.1103/physrevb.42.2307] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Cardini G, Schettino V. Molecular dynamics simulation of the vibrational properties of a disordered N2O crystal. I. Lattice frequencies. J Chem Phys 1990. [DOI: 10.1063/1.459075] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Hammonds KD, McDonald IR, Tildesley DJ. Computational studies of the structure of carbon dioxide monolayers physisorbed on the basal plane of graphite. Mol Phys 1990. [DOI: 10.1080/00268979000100931] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Löwen HW, Bier KD, Jodl HJ, Löwenschuss A, Givan A. The vibron–phonon sidebands in the Fourier‐transform infrared spectra of the molecular crystal CO2. J Chem Phys 1989. [DOI: 10.1063/1.456435] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Righini R, Angeloni L, Foggi P, Castellucci E, Califano S. Temperature-dependent (10-240 K) relaxation of vibrational excitons in KClO4 crystal. Chem Phys 1989. [DOI: 10.1016/0301-0104(89)80191-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Kuchta B, Etters RD. Prediction of a high-pressure phase transition and other properties of solid CO2 at low temperatures. ACTA ACUST UNITED AC 1988; 38:6265-6269. [PMID: 9947088 DOI: 10.1103/physrevb.38.6265] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Ranson P, Ouillon R, Califano S. Relaxation processes in molecular crystals. Temperature dependence of the bandwidth of Raman active lattice phonons of crystalline CO2. J Chem Phys 1988. [DOI: 10.1063/1.454878] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Jindal VK, Righini R, Califano S. Fourth-order relaxation processes in crystalline CO2. PHYSICAL REVIEW. B, CONDENSED MATTER 1988; 38:4259-4268. [PMID: 9946801 DOI: 10.1103/physrevb.38.4259] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
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Cardini G, Procacci P, Righini R. Molecular dynamics and anharmonic effects in the phonon spectra of solid carbon dioxide. Chem Phys 1987. [DOI: 10.1016/0301-0104(87)80188-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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