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Zhou J, Jia S, Xue X, Skitnevskaya AD, Wang E, Wang X, Hao X, Zeng Q, Kuleff AI, Dorn A, Ren X. Revealing the Role of N Heteroatoms in Noncovalent Aromatic Interactions by Ultrafast Intermolecular Coulombic Decay. J Phys Chem Lett 2024; 15:1529-1538. [PMID: 38299504 DOI: 10.1021/acs.jpclett.3c02979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
Despite the widely recognized importance of noncovalent interactions involving aromatic rings in many fields, our understanding of the underlying forces and structural patterns, especially the impact of heteroaromaticity, is still incomplete. Here, we investigate the relaxation processes that follow inner-valence ionization in a range of molecular dimers involving various combinations of benzene, pyridine, and pyrimidine, which initiate an ultrafast intermolecular Coulombic decay process. Multiparticle coincidence momentum spectroscopy, combined with ab initio calculations, enables us to explore the principal orientations of these fundamental dimers and, thus, to elucidate the influence of N heteroatoms on the relative preference of the aromatic π-stacking, H-bonding, and CH-π interactions and their dependence on the number of nitrogen atoms in the rings. Our studies reveal a sensitive tool for the structural imaging of molecular complexes and provide a more complete understanding of the effects of N heteroatoms on the noncovalent aromatic interactions at the molecular level.
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Affiliation(s)
- Jiaqi Zhou
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Shaokui Jia
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xiaorui Xue
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Anna D Skitnevskaya
- Laboratory of Quantum Chemistry, Irkutsk State University, Irkutsk 664003, Russia
| | - Enliang Wang
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei 230026, China
| | - Xing Wang
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xintai Hao
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Qingrui Zeng
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
| | - Alexander I Kuleff
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Heidelberg 69120, Germany
| | - Alexander Dorn
- Max-Planck-Institut für Kernphysik, Heidelberg 69117, Germany
| | - Xueguang Ren
- MOE Key Laboratory for Nonequilibrium Synthesis and Modulation of Condensed Matter, School of Physics, Xi'an Jiaotong University, Xi'an 710049, China
- Max-Planck-Institut für Kernphysik, Heidelberg 69117, Germany
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Hirao K, Bae HS, Song JW, Chan B. Koopmans'-Type Theorem in Kohn-Sham Theory with Optimally Tuned Long-Range-Corrected (LC) Functionals. J Phys Chem A 2021; 125:3489-3502. [PMID: 33874719 DOI: 10.1021/acs.jpca.1c01593] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In the present study, we have investigated the applicability of long-range-corrected (LC) functionals to a Kohn-Sham (KS) Koopmans'-type theorem. Specifically, we have examined the performance of optimally tuned LCgau-core functionals (in combination with BOP and PW86-PW91 exchange-correlation functionals) by calculating the ionization potential (IP) within the context of Koopmans' prediction. In the LC scheme, the electron repulsion operator, 1/r12, is divided into short-range and long-range components using a standard error function, with a range separation parameter μ determining the weight of the two ranges. For each system that we have examined (H2O, CO, benzene, N2, HF, H2CO, C2H4, and five-membered ring compounds cyclo-C4H4X, with X = CH2, NH, O, and S, and pyridine), the value of μ is optimized to minimize the deviation of the negative HOMO energy from the experimental IP. Our results demonstrate the utility of optimally tuned LC functionals in predicting the IP of outer valence levels. The accuracy is comparable to that of highly accurate ab initio theory. However, our Koopmans' method is less accurate for the inner valence and core levels. Overall, our results support the notion that orbitals in KS-DFT, when obtained with the LC functional, provide an accurate one-electron energy spectrum. This method represents a one-electron orbital theory that is attractive in its simple formulation and effective in its practical application.
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Affiliation(s)
- Kimihiko Hirao
- Fukui Institute for Fundamental Chemistry, Kyoto University, Takano, Nishihiraki-cho 34-4, Sakyo-ku, Kyoto 606-8103, Japan.,RIKEN Center for Computational Science, 7-1-26, Minatojima-minami-machi, Chuo-ku, Kobe 650-0047, Japan
| | - Han-Seok Bae
- Department of Chemistry Education, Daegu University, Gyeongsan 113-8656, Korea
| | - Jong-Won Song
- Department of Chemistry Education, Daegu University, Gyeongsan 113-8656, Korea
| | - Bun Chan
- Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan
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Trofimov AB, Skitnevskaya AD, Grigoricheva EK, Gromov EV, Köppel H. Vibronic coupling in the ground and excited states of the pyridine radical cation. J Chem Phys 2020; 153:164307. [DOI: 10.1063/5.0024446] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- A. B. Trofimov
- Laboratory of Quantum Chemical Modeling of Molecular Systems, Irkutsk State University, Karl Marx Str. 1, 664003 Irkutsk, Russia
- Favorsky’s Institute of Chemistry, SB RAS, Favorsky Str. 1, 664033 Irkutsk, Russia
| | - A. D. Skitnevskaya
- Laboratory of Quantum Chemical Modeling of Molecular Systems, Irkutsk State University, Karl Marx Str. 1, 664003 Irkutsk, Russia
| | - E. K. Grigoricheva
- Laboratory of Quantum Chemical Modeling of Molecular Systems, Irkutsk State University, Karl Marx Str. 1, 664003 Irkutsk, Russia
| | - E. V. Gromov
- Laboratory of Quantum Chemical Modeling of Molecular Systems, Irkutsk State University, Karl Marx Str. 1, 664003 Irkutsk, Russia
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
- Max-Planck Institute for Medical Research, Jahnstraße 29, 69120 Heidelberg, Germany
| | - H. Köppel
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
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Lee YR, Choi N, Kwon CH. Determination of the highest occupied molecular orbital and cationic structure of 2-chloropyridine by one-photon VUV-MATI spectroscopy and Franck–Condon fitting. Phys Chem Chem Phys 2020; 22:20858-20866. [DOI: 10.1039/d0cp03365k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Substitution of a chlorine atom for the H in pyridine alters the HOMO of the molecule, which ultimately affects the cationic structure.
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Affiliation(s)
- Yu Ran Lee
- New and Renewable Energy Research Center
- Ewha Womans University
- Seoul 03760
- Korea
| | - Nayoung Choi
- Department of Chemistry and Institute for Molecular Science and Fusion Technology
- Kangwon National University
- Chuncheon 24341
- Korea
| | - Chan Ho Kwon
- Department of Chemistry and Institute for Molecular Science and Fusion Technology
- Kangwon National University
- Chuncheon 24341
- Korea
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Abstract
The molecular structures of 12 azabenzenes have been optimized with the Gaussian09 package at the level of coupled cluster singles and doubles with the basis set cc-pVTZ. The optimized geometry of each is used in the ADF13 program for the calculation of the vertical ionization energies of all the electrons. For both outer-shell and inner-shell valence electrons, the 2009 method of ΔPBE0(SAOP) is used, whereas the 1999 method of ΔPW86PW91 + Crel is employed for the core electrons. For degenerate orbitals, the alternative method chosen is to use localized orbitals, keeping the integer number of electrons, while giving up proper symmetry, rather than to keep symmetry with fractional electrons. The success of the computed results of valence ionization potentials of pyridine and the diazabenzenes gives confidence for the predicted values for the higher azabenzenes. The calculated results for core-electron binding energies provide incentive to experimentalists to measure them with X-ray photoelectron spectrometers and (or) synchrotron facilities.
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Affiliation(s)
- Delano P. Chong
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
- Department of Chemistry, University of British Columbia, 2036 Main Mall, Vancouver, BC V6T 1Z1, Canada
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Sousa JN, Ribeiro LC, Arruda MS, Homem MGP, Tanaka HK, Credidio BC, Marinho RRT, Medina A, Prazeres I, Santos ACF, Prudente FV. Photoabsorption and Photoionization Cross Sections of Pyridine in the Vacuum-Ultraviolet Energy Range. J Phys Chem A 2019; 123:5164-5170. [DOI: 10.1021/acs.jpca.9b03778] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- J. N. Sousa
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
- Instituto Federal Baiano, Campus Guanambi, Guanambi 46430-000, BA, Brazil
| | - L. C. Ribeiro
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - Manuela S. Arruda
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - M. G. P. Homem
- Departamento de Química, Universidade Federal de São Carlos, São Carlos 13565-905, SP, Brazil
| | - H. K. Tanaka
- Instituto Federal da Bahia, Campus Porto Seguro, Porto Seguro 45810-000, BA, Brazil
| | - B. C. Credidio
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
| | - R. R. T. Marinho
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
- Instituto de Física, Universidade de Brasilia, Box 4455, Brasília 70910-970, Brazil
| | - Aline Medina
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - I. Prazeres
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - A. C. F. Santos
- Instituto de Física, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-909, RJ, Brazil
| | - F. V. Prudente
- Instituto de Física, Universidade Federal da Bahia, Salvador 40170-115, BA, Brazil
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Trofimov AB, Holland DMP, Powis I, Menzies RC, Potts AW, Karlsson L, Gromov EV, Badsyuk IL, Schirmer J. Ionization of pyridine: Interplay of orbital relaxation and electron correlation. J Chem Phys 2017; 146:244307. [DOI: 10.1063/1.4986405] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Affiliation(s)
- A. B. Trofimov
- Laboratory of Quantum Chemistry, Irkutsk State University, Karl Marx St. 1, 664003 Irkutsk, Russia
- Favorsky’s Institute of Chemistry, SB RAS, Favorsky St. 1, 664033 Irkutsk, Russia
| | - D. M. P. Holland
- Daresbury Laboratory, Daresbury, Warrington, Cheshire WA4 4AD, United Kingdom
| | - I. Powis
- School of Chemistry, University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - R. C. Menzies
- School of Chemistry, University of Nottingham, Nottingham NG7 2RD, United Kingdom
| | - A. W. Potts
- Department of Physics, King’s College, Strand, London WC2R 2LS, United Kingdom
| | - L. Karlsson
- Department of Physics and Astronomy, Uppsala University, Box 516, SE-751 20 Uppsala, Sweden
| | - E. V. Gromov
- Max Planck Institute for Medical Research, Jahnstraße 29, 69120 Heidelberg, Germany
| | - I. L. Badsyuk
- Favorsky’s Institute of Chemistry, SB RAS, Favorsky St. 1, 664033 Irkutsk, Russia
| | - J. Schirmer
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
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Lee YR, Kang DW, Kim HL, Kwon CH. One-photon mass-analyzed threshold ionization (MATI) spectroscopy of pyridine: Determination of accurate ionization energy and cationic structure. J Chem Phys 2014; 141:174303. [DOI: 10.1063/1.4900569] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Affiliation(s)
- Yu Ran Lee
- Department of Chemistry and Institute for Molecular Science and Fusion Technology, College of Natural Sciences, Kangwon National University, Chuncheon 200-701, South Korea
| | - Do Won Kang
- Department of Chemistry and Institute for Molecular Science and Fusion Technology, College of Natural Sciences, Kangwon National University, Chuncheon 200-701, South Korea
| | - Hong Lae Kim
- Department of Chemistry and Institute for Molecular Science and Fusion Technology, College of Natural Sciences, Kangwon National University, Chuncheon 200-701, South Korea
| | - Chan Ho Kwon
- Department of Chemistry and Institute for Molecular Science and Fusion Technology, College of Natural Sciences, Kangwon National University, Chuncheon 200-701, South Korea
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Liu SY, Alnama K, Matsumoto J, Nishizawa K, Kohguchi H, Lee YP, Suzuki T. He I Ultraviolet Photoelectron Spectroscopy of Benzene and Pyridine in Supersonic Molecular Beams Using Photoelectron Imaging. J Phys Chem A 2011; 115:2953-65. [PMID: 21413769 DOI: 10.1021/jp1098574] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Suet-Yi Liu
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Koutayba Alnama
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Jun Matsumoto
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Kiyoshi Nishizawa
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
| | - Hiroshi Kohguchi
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
- Department of Chemistry, School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Yuan-Pern Lee
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 30010, Taiwan
| | - Toshinori Suzuki
- Chemical Dynamics Laboratory, RIKEN Advanced Science Institute, 2-1 Hirosawa, Wako 351-0198, Japan
- Department of Applied Chemistry, National Chiao Tung University, Hsinchu 30010, Taiwan
- Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
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Tonigold K, Gross A. Adsorption of small aromatic molecules on the (111) surfaces of noble metals: A density functional theory study with semiempirical corrections for dispersion effects. J Chem Phys 2010; 132:224701. [PMID: 20550410 DOI: 10.1063/1.3439691] [Citation(s) in RCA: 205] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Katrin Tonigold
- Institute for Theoretical Chemistry, Ulm University, D-89069 Ulm, Germany
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Bawagan ADO, Davidson ER. Understanding Electron Correlation: Recent Progress in Molecular Synchrotron Photoelectron Spectroscopy. ADVANCES IN CHEMICAL PHYSICS 2007. [DOI: 10.1002/9780470141694.ch3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
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Li Y, Wan J, Xu X. Theoretical study of the vertical excited states of benzene, pyrimidine, and pyrazine by the symmetry adapted cluster—Configuration interaction method. J Comput Chem 2007; 28:1658-67. [PMID: 17342722 DOI: 10.1002/jcc.20555] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The ground state and the excited states of benzene, pyrimidine, and pyrazine have been examined by using the symmetry adapted cluster-configuration interaction (SAC-CI) method. Detailed characterizations and the structures of the absorption peaks in the vacuum ultraviolet (VUV), low energy electron impact (LEEI), and electron energy loss (EEL) spectra were theoretically clarified by calculating the excitation energy and the oscillator strength for each excited state. We show that SAC-CI has the power to well reproduce the electronic excitation spectra (VUV, LEEI, and EEL) simultaneously to an accuracy for both the singlet and the triplet excited states originated from the low-lying pi --> pi*, n --> pi*, pi --> sigma* and n --> sigma* excited states of the titled compounds. The present results are compared with those of the previous theoretical studies by methods, such as EOM-CCSD(T), STEOM-CCSD, CASPT2 and TD-B3LYP, etc.
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Affiliation(s)
- Yongjian Li
- Key Laboratory of Pesticide and Chemical Biology (MOE), College of Chemistry, Central China Normal University, Wuhan 430079, China
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Chong DP, Gritsenko OV, Baerends EJ. Interpretation of the Kohn–Sham orbital energies as approximate vertical ionization potentials. J Chem Phys 2002. [DOI: 10.1063/1.1430255] [Citation(s) in RCA: 439] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tixier S, Shapley W, Zheng Y, Chong D, Brion C, Shi Z, Wolfe S. Electron densities for the outer valence orbitals of pyridine: comparison of EMS measurements with near Hartree–Fock limit and density functional theory calculations. Chem Phys 2001. [DOI: 10.1016/s0301-0104(01)00401-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Wan J, Hada M, Ehara M, Nakatsuji H. Electronic excitation and ionization spectra of azabenzenes: Pyridine revisited by the symmetry-adapted cluster configuration interaction method. J Chem Phys 2001. [DOI: 10.1063/1.1351880] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Kishimoto N, Ohno K. Collision Energy Resolved Penning Ionization Electron Spectroscopy of Azines: Anisotropic Interaction of Azines with He*(23S) Atoms and Assignments of Ionic States. J Phys Chem A 2000. [DOI: 10.1021/jp000973l] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Naoki Kishimoto
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
| | - Koichi Ohno
- Department of Chemistry, Graduate School of Science, Tohoku University, Aoba-ku, Sendai 980-8578, Japan
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Vaschetto ME, Retamal BA, Monkman AP, Springborg M. First-Principles Calculations of Pyridines: From Monomer to Polymer. J Phys Chem A 1999. [DOI: 10.1021/jp992204b] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Muchall HM, Werstiuk NH, Pitters JL, Workentin MS. A He(I) ultraviolet photoelectron spectroscopic and computational study of the electronic structure of phenyl and pyridinyl diazoketones and diazoesters. Tetrahedron 1999. [DOI: 10.1016/s0040-4020(98)01182-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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