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Quasielastic light-scattering study on changes in sizes of native white membranes after addition of retinal. Biophys J 2010; 50:139-44. [PMID: 19431677 DOI: 10.1016/s0006-3495(86)83446-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Aqueous suspensions of native white membranes from Halobacterium halobium, strain JW2N, have been studied by quasielastic light scattering. The intensity autocorrelation functions of polarized scattered light from suspensions of white membranes themselves and of white membranes after reconstitution with retinal were measured at various K(2), K being the magnitude of the scattering vector. The first cumulant or the average decay rate of the correlation function was obtained by a cumulant expansion method. The first cumulant for the white membranes increased after retinal was added to the suspension. The first cumulants obtained before and after the addition of retinal were almost independent of pH in the range 7 to 11, and of temperature in the range 15 degrees to 40 degrees C after T/eta scaling, eta being the solvent viscosity. This suggests that photocycling in reconstituted membranes, induced by the probe laser-beam, did not cause any detectable change in spectra, and that the membrane flexibility, if present, was independent of the above conditions, so that the spectral changes after the addition of retinal could be attributed mostly to the changes in the sizes of the membranes. A theoretical formulation for the first cumulant for a rigid disk-like scatterer (Fujime, S. and K. Kubota, 1985, Biophys. Chem., 23:1-13.) was applied to the analysis of the spectra. The results suggest that the radii of the membrane patches decreased by several percent after the addition of retinal.
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Zhang J, Wang SC, Lee CT. Photoreversible Conformational Changes in Membrane Proteins Using Light-Responsive Surfactants. J Phys Chem B 2009; 113:8569-80. [DOI: 10.1021/jp807875u] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Jing Zhang
- Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089-1211
| | - Shao-Chun Wang
- Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089-1211
| | - C. Ted Lee
- Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089-1211
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Fujime S, Kubota K. Dynamic light scattering from dilute suspensions of thin discs and thin rods as limiting forms of cylinder, ellipsoid and ellipsoidal shell of revolution. Biophys Chem 2008; 23:1-13. [PMID: 17007788 DOI: 10.1016/0301-4622(85)80059-4] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/1985] [Revised: 05/28/1985] [Accepted: 06/15/1985] [Indexed: 11/27/2022]
Abstract
A previous formulation of the field correlation function G1(tau) of light quasielastically scattered from suspensions of rigid rods undergoing anisotropic translational as well as rotational diffusion (T. Maeda and S. Fujime, Macromolecules 17 (1984) 1157) was extended to the cases of suspensions of cylinders (length L and radius R), ellipsoids and ellipsoidal shells of revolution (x2/b2 + y2/b2 + z2/a2 = 1). The present formulation includes that for suspensions of rigid rods in the limit of KR 1 or in the limit of b/a 1 and Kb 1 (an extremely prolate ellipsoid), and also that for suspensions of discs in the limit of KL 1 or in the limit of b/a 1 and Ka 1 (an extremely oblate ellipsoid), where K is the length of the scattering vector. Explicit forms of G1(tau), of the first cumulant Gamma of G1(tau) and of the dynamic form factors will be given, and numerical methods suitable for computation of dynamic form factors will be discussed. The present results can be applied to the analysis of experimental data for dilute suspensions of thin rods and thin discs. When the situation is favorable, our method can provide transport coefficients D1, D3, and Theta from dynamic light-scattering data only, where D(1) and D(3) are, respectively, the translational diffusion coefficients parallel with the x (y) and z axes, and Theta the rotational diffusion coefficient around the x (y) axis.
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Affiliation(s)
- S Fujime
- Mitsubishi - Kasei Institute of Life Sciences, Machida, Tokyo 194, Japan
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Abstract
We describe the synthesis and the solution properties of sheet- and disclike Janus particles, containing an inner crosslinked polybutadiene (PB) layer and two different outer sides of polystyrene (PS) and poly(tert-butyl methacrylate) (PtBMA). The structures formed upon adsorption of the flat Janus particles onto solid substrates as well as in THF solution are investigated. The Janus discs are obtained in a template-assisted synthetic pathway followed by sonication. Selectively crosslinking the lamellar PB domains in a well-ordered lamellar microphase-separated bulk morphology of PS-block-PB-block-PtBMA (SBT) block terpolymers leads to the conservation of the compartmentalization of the two outer blocks. Sonication of the crosslinked block terpolymer templates renders soluble sheet- and disclike Janus particles, the size of which can be tuned from the micrometer range down to the nanometer scale. Small-angle X-ray scattering, transmission electron microscopy, dynamic light scattering, scanning force microscopy, and scanning electron microscopy are used to characterize the template-assisted synthetic process and the solution properties. Cryogenic transmission electron microscopy in THF and TEM of particles, embedded into a photo-crosslinkable silicon oil, indicate a supramolecular aggregation behavior of the Janus discs in concentrated solutions. Pendant drop tensiometry demonstrates that Janus sheets and discs can be used to stabilize liquid-liquid interfaces, rendering these materials interesting for future applications.
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Affiliation(s)
- Andreas Walther
- Makromolekulare Chemie II and Bayreuther Zentrum für Kolloide und Grenzflächen, Universität Bayreuth, D-95440 Bayreuth, Germany.
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Zhivkov AM. Change of purple membranes geometry induced by protein adsorption. Colloids Surf B Biointerfaces 2007; 56:170-3. [PMID: 17218085 DOI: 10.1016/j.colsurfb.2006.11.037] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2006] [Accepted: 11/30/2006] [Indexed: 11/24/2022]
Abstract
Earlier it was an orthodoxy that purple membranes (PMs) in aqueous medium are shaped as flat hard disks. In a few newer articles it has been shown that PMs are bent and their curvature varies with surface charge density. The purpose of this work is to answer which is the dominant factor for PM bending--structural or electrostatic forces. Two positively charged proteins are used: phytohemagglutinin (PhHA) and protamine. The electrophoretic mobility and electric polarizability of PMs are measured by microelectrophoresis and electric dichroism. The results show that both proteins reduce the mobility because they are adsorbed on PM surface. However, their influence on the electric polarizability is in the opposite direction--protamine reduces it (trivial effect) while PhHA increases the polarizability (non-trivial effect). The last result is explained by a straightening the initially bent PM because of specific bonding of PhHA to asymmetrically disposed glycolipids of PM in contrast to the electrostatic adsorption of protamine. It has been concluded that PMs in water medium are bent in the same manner as in in vivo--the intracellular surface with a higher negative charge is concave. The results indicate that electrostatic forces play a significant role in PM curvature but the shape of structural elements is the main factor determining the geometry of PM.
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Affiliation(s)
- Alexandar M Zhivkov
- Institute of Physical Chemistry, Bulgarian Academy of Science, 1113 Sofia, Bulgaria.
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pH-dependence of electric light scattering by water suspension of purple membranes. Colloids Surf A Physicochem Eng Asp 2002. [DOI: 10.1016/s0927-7757(02)00195-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Zhang D, Mauzerall D. Volume and enthalpy changes in the early steps of bacteriorhodopsin photocycle studied by time-resolved photoacoustics. Biophys J 1996; 71:381-8. [PMID: 8804620 PMCID: PMC1233488 DOI: 10.1016/s0006-3495(96)79235-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Abstract
We have studied the photoinduced volume changes, energetics, and kinetics in the early steps of the bacteriorhodopsin (BR) photocycle with pulsed, time-resolved photoacoustics. Our data show that there are two volume changes. The fast volume change ( < or = 200 ns) is an expansion (2.5 +/- 0.3 A3/molecule) and is observed exclusively in the purple membrane (PM), vanishing in the 3-[(3-cholamidopropyl)-dimethylammonio] -1-propane-sulfonate-sulfonate-solubilized BR sample; the slow change (approximately 1 micros) is a volume contraction (-3.7 +/- 0.3 A3/molecule). The fast expansion is assigned to the restructuring of the aggregated BR in the PM, and the 1-micros contraction to the change in hydrogen bonding of water at Asp 212 (Kandori et al. 1995. J. Am. Chem. Soc. 117:2118-2119). The formation of the K intermediate releases most of the absorbed energy as heat, with delta Hk = -36 +/- 8 kJ/mol. The activation energy of the K --> L step is 49 +/- 6 kJ/mol, but the enthalpy change is small, -4 +/- 10 kJ/mol. On the time scale we studied, the primary photochemical kinetics, enthalpy, and volume changes are not affected by substituting the solvent D2O for H2O. Comparing data on monomeric and aggregated BR, we conclude that the functional unit for the photocycle is the BR monomer, because both the kinetics (rate constant and activation energy) and the enthalpy changes are independent of its aggregation state.
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Affiliation(s)
- D Zhang
- Rockefeller University, New York, New York 10021, USA
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Gebe JA, Schurr JM. Intramolecular interference effects in dynamic light scattering from rigid rings. Biopolymers 1993. [DOI: 10.1002/bip.360331202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Wu PG, Song L, Schurr JM. Intramolecular interference effects in dynamic light scattering: rigid double spirals and superhelical DNAs. Biopolymers 1990; 29:1211-32. [PMID: 2164427 DOI: 10.1002/bip.360290811] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
A theory is developed for dynamic light scattering (DLS) from rigid double spirals by treating an invisible rigid cylinder with two helical scattering stripes on opposite sides of its cylindrical surface. The exact initial, or first cumulant, diffusion coefficient Dapp (K) is obtained in terms of the translational diffusion coefficients (D parallel and D perpendicular) parallel and perpendicular to the symmetry axis, the rotational diffusion coefficients (DR parallel and DR perpendicular) around the symmetry and transverse axes, the length (L) and radius (b) of the cylindrical surface bearing the stripes, and the pitch (p). Interference effects, namely geometrical antiresonances, between strands, produce deep minima in the static structure factor S (K) and corresponding prominent peaks in Dapp (K). These peaks in Dapp (K) depend sensitively on the rotational dynamics around the symmetry axis, and nearly vanish when DR parallel = 0. Some results for single spirals are also presented. A simpler model in which scattering points are attached at opposite ends of an otherwise invisible thin rigid rod is also treated, and shown to exhibit modest minima in S (K) and corresponding maxima in Dapp (K). Confining this rod to a plane containing K enhances the amplitudes of the oscillations in S (K) and Dapp (K), as expected. Rigid double spirals are employed as crude models for interwound supercoiled DNAs in order to assess the possible occurrence of interference effects. Although native supercoiled DNAs exhibit a cylinder diameter that is much too small to exhibit geometrical antiresonances in the presently accessible range of K2, nearly relaxed supercoiled DNAs are predicted to exhibit their first maximum in Dapp (K) just inside this range. Previously reported data for the effect of Escherichia coli single-strand binding (ssb) protein on the DLS of supercoiled pBR322 DNA cannot be mimicked by a gradual homogeneous reduction of superhelix density with increasing ssb, but instead can be mimicked by inhomogeneous all-or-none binding in which uncomplexed native DNAs and nearly relaxed saturated ssb/DNA complexes coexist in varying proportions. Experimental Dapp (K) and S (K) data for a sample of relaxed pUC8 dimers display, respectively, a broad maximum and a corresponding minimum, in qualitative agreement with rough theoretical predictions.
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Affiliation(s)
- P G Wu
- Department of Chemistry, University of Washington, Seattle 98195
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Mochizuki-Oda N, Fujime S. Dynamic light-scattering study of synthetic myosin filaments. Biopolymers 1988; 27:1389-401. [PMID: 3219402 DOI: 10.1002/bip.360270906] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Abstract
By dynamic light scattering, the intensity autocorrelation function, G2(tau) = B[1 + beta[g1(tau)[2], was obtained over the scattering angles (theta) from 30 to 130 degrees in steps of 10 degrees for semidilute solutions of muscle F-actin and of F-actin complexed with heavy meromyosin in the absence of ATP (acto-HMM), where B is the baseline and beta a constant. The main findings were: (1) A 0.5 mg/ml F-actin solution gave nonreproducible spectra at theta less than or equal to 40 degrees but quite reproducible spectra at theta greater than or equal to 50 degrees, with beta = 0.9-0.8 at all theta values. Nonreproducibility of spectra at low theta values was concluded to be due to restricted motions of very long filaments confined in cages or zig-zag tubing formed by a major fraction of filaments, where the very long filaments were those at a distant tail of an exponential length distribution and the major fraction of filaments were those with lengths around Ln-2Ln, Ln being the number-average length. Spectral widths were compared with theoretical ones for rigid rods averaged over the length distribution with Ln = 900 nm, and were suggested to be largely contributed at high theta values from bending motions of filaments. (2) Acto-HMM solutions at 0.5 mg/ml F-actin and at weight ratios of HMM to F-actin of 0.5-2 gave spectra which, with respect to theta, behaved very similarly to those of F-actin alone. The spectral widths, however, drastically decreased with the weight ratio up to unity and stayed virtually constant above unity. In contrast to a previous study (F.D. Carlson and A.B. Fraser, J. Mol. Biol. 89 (1974) 273), beta values of acto-HMM were as large as those of F-actin alone. Acto-HMM was concluded to travel a distance far greater than 1/K with a mobility smaller than that of F-actin, where K = (4 pi/lambda) sin(theta/2), lambda being the wavelength of light in the medium. These results suggest that acto-HMM gels are very soft even though they did not pour from an inverted cell. Based on several intuitive models which give a mutual relationship between the beta value and modes of motion of scatterers, we discuss the restricted motions responsible for nonreproducibility of spectra at low angles and large beta values of acto-HMM gels at all theta values and weight ratios so far studied.
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Affiliation(s)
- S Fujime
- Mitsubishi-Kasei Institute of Life Sciences, Tokyo, Japan
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Sasaki S, Fujime S. Dynamic light-scattering study on changes in flexibility of filamentous bacteriophage Pf1 with temperature. Biophys J 1987; 51:503-7. [PMID: 3567315 PMCID: PMC1329916 DOI: 10.1016/s0006-3495(87)83372-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
The temperature dependence of the flexibility of bacteriophage Pf1 was investigated by dynamic light scattering, and the following results were obtained: The gamma/K2 values measured at 1 degree-25 degrees C and at various K values were T/eta-scaled to 20 degrees C, where gamma is the first cumulant of the field correlation function of scattered light, K is the length of the scattering vector, T is the absolute temperature, and eta is the solvent viscosity at T. And it was found that the scaled gamma/K2 values at low K values were independent of temperature, whereas those at high K values increased sigmoidally and reversibly against temperature. This suggests that the virion is more flexible at temperatures above the transition temperature Tt. This characteristic temperature Tt depended on the pH of the suspension: Tt = 11 degrees C at pH 6.9 and Tt = 8 degrees C at pH 8.2.
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