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Fojt L, Doneux T, Fojta M. Effects of halide anions on adsorption and 2D condensation of 5-fluorocytosine at hanging mercury drop electrode. J Electroanal Chem (Lausanne) 2018. [DOI: 10.1016/j.jelechem.2018.02.057] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Fojt L, Doneux T, Vetterl V. Two-dimensional condensation of 5-fluorocytosine at the mercury electrode. Electrochim Acta 2012. [DOI: 10.1016/j.electacta.2011.12.061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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3
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Affiliation(s)
- Emil Paleček
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, 612
65 Brno, Czech Republic
| | - Martin Bartošík
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, 612
65 Brno, Czech Republic
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Fojt L, Vetterl V, Doneux T. Adsorption and two-dimensional condensation of 5-methylcytosine. Bioelectrochemistry 2009; 75:89-94. [PMID: 19307159 DOI: 10.1016/j.bioelechem.2009.02.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2008] [Revised: 02/06/2009] [Accepted: 02/10/2009] [Indexed: 12/16/2022]
Abstract
Purine and pyrimidine derivatives occurring in nucleic acids posses an extraordinary high ability of self-association at the electrode surface and can form there by a two-dimensional (2D) condensation a monomolecular compact film (self-assembled monolayer-SAM). The effects of methyl substituent on the 2D condensation were studied using the 5-methylcytosine molecule which is involved in gene silencing and has a great biological impact. At acid pHs, 5-methylcytosine forms at the mercury electrode a physisorbed self-assembled 2D layer at potentials close to the potential of electrocapillary maximum. From the temperature dependence of the electrode double layer capacitance, the standard Gibbs energy of adsorption (Delta G(m)=-12.7 kJ mol(-1)), lateral interaction coefficient of the Frumkin adsorption isotherm (a(c)=2.05) and area occupied by one molecule (A=1.31 nm(2)) in the 2D layer were determined. Measurements performed on a single-crystal Au(111) surface show that the 2D condensation can take place on other substrates as well.
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Affiliation(s)
- Lukás Fojt
- Institute of Biophysics ASCR, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
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Sieńko D, Nieszporek J, Nieszporek K, Gugała D, Saba J. Adsorption of Cytosine on a Mercury Electrode. ACTA ACUST UNITED AC 2006. [DOI: 10.1135/cccc20061393] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The electrosorption behavior of cytosine at the mercury electrode/acetic buffer of pH 4 and 5 interfaces was determined from the double-layer differential capacity measurements extrapolated to zero frequency. Solutions of cytosine were prepared to cover the range from 1 × 10-4 to 6 × 10-3 mol dm-3. Adsorption of cytosine was described by the adsorption isotherms constants derived from the surface pressure data as a function of electrode charge density and bulk concentration. The obtained values of the relative surface excesses Γ′ were higher in the acetic buffer of pH 4 than of pH 5. Maximum of cytosine adsorption in the mentioned buffers was at -581 and -551 mV, respectively. The values of the standard Gibbs energy ∆G° obtained from the Frumkin isotherm were higher in the buffer of pH 4 than of pH 5. The values of the interaction parameter A indicated weaker repulsive interaction between adsorbed molecules of cytosine in the former buffer. The adsorption parameters obtained from the virial isotherm confirmed corresponding parameters obtained from the Frumkin isotherm. The dependences of ΦM-2 on the relative surface excess at a constant charge density were analyzed in order to calculate the electrostatic parameters of the inner layer.
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Electrochemical Properties of Nucleic Acid Components. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/s1871-0069(05)01002-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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Abstract
The kinetics of phase transitions of cytidine adsorbed on mercury are studied by chronoamperometry and capacitance measurements. Cytidine forms highly ordered two-dimensional adlayers in a broad range of pH. In acid solvent, only one kind of condensed layer is formed. In the alkaline solution, cytidine forms two different two-dimensional (2D) adlayers. The minimum capacitance value in adlayer II at pH 5 is 7.0 microF cm(-2) and, at pH 8.3, it is 5.1 microF cm(-2); in adlayer III, the minimum capacitance is 10.6 microF cm(-2). The formation of a physisorbed film of cytidine molecules adsorbed at the mercury surface proceeds by complex mechanisms. From j-t transients, it can be seen that the phase transformations from dilute adlayer Ia to condensed physisorbed film II is accompanied by the reorientation of cytidine molecules at the mercury surface (inverted current transient). The interfacial transformations of the cytidine film yield a sigmoidal C-t transient. This experimentally measured C-t transient were analysed by Avrami theorem. The rate of the transformations from dilute adlayer Ia to condensed film II of cytidine at pH 5 depends strongly on temperature but is only slightly affected by temperature at pH 8.3. The effect of pH and ionic composition of the supporting electrolyte on the rate of transformation of cytidine films was studied as well.
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Affiliation(s)
- Stanislav Hason
- Department of Physical Electronics, Laboratory of Biophysics, Faculty of Science, Masaryk University, Kotlárská 2, CZ-611 37 Brno, Czech Republic.
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Vetterl V, Papadopoulos N, Dražan V, Strašák L, Hasoň S, Dvořák J. Nucleic acid sensing by impedance measurements. Electrochim Acta 2000. [DOI: 10.1016/s0013-4686(00)00375-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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9
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Adsorption and Two-Dimensional Condensation of Thiabendazole at a Mercury/Solution Interface. J Colloid Interface Sci 1999. [DOI: 10.1006/jcis.1999.6455?] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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10
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Adsorption and Two-Dimensional Condensation of Thiabendazole at a Mercury/Solution Interface. J Colloid Interface Sci 1999; 219:144-148. [PMID: 10527580 DOI: 10.1006/jcis.1999.6455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The adsorption behavior of the fungicide thiabendazole [2-(4'-thiazolyl) benzimidazole] was studied with out-of-phase ac voltammetry using a hanging mercury drop electrode in 0.3 M KCl solutions at various temperatures and thiabendazole concentrations. A state of "normal" adsorption and a condensed two-dimensional layer at moderately charged and rather negatively charged surfaces, respectively, have been characterized. Copyright 1999 Academic Press.
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Comparative studies on the adsorption and association of 3-methylxanthine and 7-methylxanthine at a charged interface. MONATSHEFTE FUR CHEMIE 1996. [DOI: 10.1007/bf00817253] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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12
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Ibrahim M. Adsorption stages and interfacial orientations of cytidine sulphate at the mercury/electrolyte interface. Electrochim Acta 1995. [DOI: 10.1016/0013-4686(95)00106-o] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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13
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Buess-Herman C. Coadsorption of 3-methylisoquinoline molecules and perchlorate ions at the mercury—aqueous solution interface. J Electroanal Chem (Lausanne) 1993. [DOI: 10.1016/0022-0728(93)80166-f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Kamal M, Temerk Y, Ahmed Z, Ibrahim M. Comparative studies on the adsorption and the association of thymine and thymidine at the charged interface. ACTA ACUST UNITED AC 1990. [DOI: 10.1016/0302-4598(90)85019-e] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Temerk Y, Kamal M, Valenta P. Adsorption and association of adenosine dinucleotides at charged interfaces. J Electroanal Chem (Lausanne) 1990. [DOI: 10.1016/0022-0728(90)87518-o] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Kamal M, Temerk Y, Ahmed Z, Ibrahim M. Comparative studies on the adsorption and the association of thymine and thymidine at the charged interface. J Electroanal Chem (Lausanne) 1990. [DOI: 10.1016/0022-0728(90)87517-n] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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18
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Jursa J, Vetterl V. Association of methyl, amino and hydroxy derivatives of adenine at a mercury electrode at various sodium chloride concentrations. ACTA ACUST UNITED AC 1990. [DOI: 10.1016/0022-0728(90)87219-a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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D�rfler HD, Dietrich J, M�ller E, Philipp R. Two-dimensional condensation in camphor-10-sulphonic acid films at the mercury/electrolyte interface. Colloid Polym Sci 1990. [DOI: 10.1007/bf01410409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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20
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The effect of pH and the nature of the anions of the supporting electrolyte on the adsorption and the association of uracil and uridine at the charged interface. ACTA ACUST UNITED AC 1989. [DOI: 10.1016/0022-0728(89)87111-6] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Elżanowska H, van de Sande J. Application of polarography to the study of complexation and stacking interactions of bases in the BZ helical transition of poly[d(GC)] and poly[d(G-m5C)] induced by Ni(II) and Mn(II). J Electroanal Chem (Lausanne) 1988. [DOI: 10.1016/0022-0728(88)87080-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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22
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Elżanowska H, van de Sande J. Application of polarography to the study of complexation and stacking interactions of bases in the B–Z helical transition of poly[d(G–C)] and polyld(G-m5 C)] induced by Ni(II) and Mn(II). ACTA ACUST UNITED AC 1988. [DOI: 10.1016/0302-4598(88)80024-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Philipp R, Retter U, Dittrich J, Müller E, Kuschel F. Adsorption and film formation of camphor-10-sulfonate at the mercury—solution interface. Electrochim Acta 1987. [DOI: 10.1016/0013-4686(87)80002-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Anomalous multilayer electrosorption of n-heptanol and n-hexanol on mercury in comparison to the similar adsorption by the corresponding aliphatic acids. J Colloid Interface Sci 1985. [DOI: 10.1016/0021-9797(85)90357-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Paleček E, Vojtíšková M, Jelen F, Lukášová E. Introduction of an electroactive marker into the polynucleotide chain: A new probe for distorted regions in the DNA double helix. ACTA ACUST UNITED AC 1984. [DOI: 10.1016/0302-4598(84)85156-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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