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For: Szybalski W, Blumenthal RM, Brooks JE, Hattman S, Raleigh EA. Nomenclature for bacterial genes coding for class-II restriction endonucleases and modification methyltransferases. Gene X 1988;74:279-80. [PMID: 3266859 DOI: 10.1016/0378-1119(88)90303-4] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
Number Cited by Other Article(s)
1
Casselli T, Tourand Y, Gura K, Stevenson B, Zückert WR, Brissette CA. Endogenous Linear Plasmids lp28-4 and lp25 Are Required for Infectivity and Restriction Protection in the Lyme Disease Spirochete Borrelia mayonii. Infect Immun 2023;91:e0006123. [PMID: 36853005 PMCID: PMC10016076 DOI: 10.1128/iai.00061-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 02/10/2023] [Indexed: 03/01/2023]  Open
2
Fomenkov A, Sun Z, Dila DK, Anton BP, Roberts RJ, Raleigh EA. EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination. PLoS One 2017;12:e0179853. [PMID: 28654677 PMCID: PMC5487053 DOI: 10.1371/journal.pone.0179853] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 06/05/2017] [Indexed: 12/24/2022]  Open
3
Pingoud V, Sudina A, Geyer H, Bujnicki JM, Lurz R, Lüder G, Morgan R, Kubareva E, Pingoud A. Specificity Changes in the Evolution of Type II Restriction Endonucleases. J Biol Chem 2005;280:4289-98. [PMID: 15563460 DOI: 10.1074/jbc.m409020200] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
4
A Nomenclature for Restriction Enzymes, DNA Methyltransferases, Homing Endonucleases, and Their Genes. ACTA ACUST UNITED AC 2004. [DOI: 10.1007/978-3-642-18851-0_1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2023]
5
Roberts RJ, Belfort M, Bestor T, Bhagwat AS, Bickle TA, Bitinaite J, Blumenthal RM, Degtyarev SK, Dryden DTF, Dybvig K, Firman K, Gromova ES, Gumport RI, Halford SE, Hattman S, Heitman J, Hornby DP, Janulaitis A, Jeltsch A, Josephsen J, Kiss A, Klaenhammer TR, Kobayashi I, Kong H, Krüger DH, Lacks S, Marinus MG, Miyahara M, Morgan RD, Murray NE, Nagaraja V, Piekarowicz A, Pingoud A, Raleigh E, Rao DN, Reich N, Repin VE, Selker EU, Shaw PC, Stein DC, Stoddard BL, Szybalski W, Trautner TA, Van Etten JL, Vitor JMB, Wilson GG, Xu SY. A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes. Nucleic Acids Res 2003;31:1805-12. [PMID: 12654995 PMCID: PMC152790 DOI: 10.1093/nar/gkg274] [Citation(s) in RCA: 531] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2002] [Revised: 02/03/2003] [Accepted: 02/03/2003] [Indexed: 11/12/2022]  Open
6
Vaisvila R, Morgan RD, Posfai J, Raleigh EA. Discovery and distribution of super-integrons among pseudomonads. Mol Microbiol 2001;42:587-601. [PMID: 11722728 DOI: 10.1046/j.1365-2958.2001.02604.x] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
7
Pertsev AV, Den’mukhametov MM, Anoshkin AG, Ariskina EV, Berezin IA, Solonin AS, Kuz’min NP. Restriction endonucleases from various bacterial strains displaying an ice-nucleating activity. APPL BIOCHEM MICRO+ 2000. [DOI: 10.1007/bf02738126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
8
Twomey DP, McKay LL, O'Sullivan DJ. Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes. J Bacteriol 1998;180:5844-54. [PMID: 9811640 PMCID: PMC107656 DOI: 10.1128/jb.180.22.5844-5854.1998] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
9
Schäfer A, Tauch A, Droste N, Pühler A, Kalinowski J. The Corynebacterium glutamicum cglIM gene encoding a 5-cytosine methyltransferase enzyme confers a specific DNA methylation pattern in an McrBC-deficient Escherichia coli strain. Gene 1997;203:95-101. [PMID: 9426239 DOI: 10.1016/s0378-1119(97)00519-2] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
10
Rina M, Caufrier F, Markaki M, Mavromatis K, Kokkinidis M, Bouriotis V. Cloning and characterization of the gene encoding PspPI methyltransferase from the Antarctic psychrotroph Psychrobacter sp. strain TA137. Predicted interactions with DNA and organization of the variable region. Gene 1997;197:353-60. [PMID: 9332385 DOI: 10.1016/s0378-1119(97)00283-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
11
Stankevicius K, Povilionis P, Lubys A, Menkevicius S, Janulaitis A. Cloning and characterization of the unusual restriction-modification system comprising two restriction endonucleases and one methyltransferase. Gene 1995;157:49-53. [PMID: 7607524 DOI: 10.1016/0378-1119(94)00796-u] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
12
Kröger M, Blum E, Deppe E, Düsterhöft A, Erdmann D, Kilz S, Meyer-Rogge S, Möstl D. Organization and gene expression within restriction-modification systems of Herpetosiphon giganteus. Gene X 1995;157:43-7. [PMID: 7607523 DOI: 10.1016/0378-1119(94)00779-r] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
13
Blum E, Horst G, Kröger M. PCR-directed preparation and single-step purification of highly active histidine-tagged restriction endonuclease HgiBI (GGWCC). Gene 1995;157:107-8. [PMID: 7607468 DOI: 10.1016/0378-1119(94)00780-v] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
14
Vaisvila R, Vilkaitis G, Janulaitis A. Identification of a gene encoding a DNA invertase-like enzyme adjacent to the PaeR7I restriction-modification system. Gene 1995;157:81-4. [PMID: 7607531 DOI: 10.1016/0378-1119(94)00793-r] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
15
Vaisvila R, Sliesaraviciute Z, Kulakauskas S, Janulaitis A. Cloning of the ppu21IM gene using a in vivo selection method. Gene 1995;157:55-7. [PMID: 7607525 DOI: 10.1016/0378-1119(94)00792-q] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
16
Lubys A, Janulaitis A. Cloning and analysis of the plasmid-borne genes encoding the Bsp6I restriction and modification enzymes. Gene X 1995;157:25-9. [PMID: 7607501 DOI: 10.1016/0378-1119(94)00795-t] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
17
Rimseliene R, Vaisvila R, Janulaitis A. The eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system. Gene X 1995;157:217-9. [PMID: 7607493 DOI: 10.1016/0378-1119(94)00794-s] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
18
O'Sullivan DJ, Zagula K, Klaenhammer TR. In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030. J Bacteriol 1995;177:134-43. [PMID: 7528201 PMCID: PMC176565 DOI: 10.1128/jb.177.1.134-143.1995] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
19
Rina M, Markaki M, Bouriotis V. Sequence of the cloned bseCIM gene: M.BseCI reveals high homology to M.BanIII. Gene 1994;150:71-3. [PMID: 7959066 DOI: 10.1016/0378-1119(94)90860-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
20
Lubys A, Menkevicius S, Timinskas A, Butkus V, Janulaitis A. Cloning and analysis of translational control for genes encoding the Cfr9I restriction-modification system. Gene 1994;141:85-9. [PMID: 8163180 DOI: 10.1016/0378-1119(94)90132-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
21
Karyagina AS, Lunin VG, Degtyarenko KN, Uvarov VY, Nikolskaya II. Analysis of the nucleotide and derived amino acid sequences of the SsoII restriction endonuclease and methyltransferase. Gene X 1993;124:13-9. [PMID: 7916706 DOI: 10.1016/0378-1119(93)90756-s] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
22
Kaszubska W, Webb HK, Gumport RI. Purification and characterization of the M.RsrI DNA methyltransferase from Escherichia coli. Gene 1992;118:5-11. [PMID: 1511884 DOI: 10.1016/0378-1119(92)90242-h] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
23
Barany F, Slatko B, Danzitz M, Cowburn D, Schildkraut I, Wilson GG. The corrected nucleotide sequences of the TaqI restriction and modification enzymes reveal a thirteen-codon overlap. Gene 1992;112:91-5. [PMID: 1551602 DOI: 10.1016/0378-1119(92)90307-b] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
24
Barany F, Danzitz M, Zebala J, Mayer A. Cloning and sequencing of genes encoding the TthHB8I restriction and modification enzymes: comparison with the isoschizomeric TaqI enzymes. Gene 1992;112:3-12. [PMID: 1339363 DOI: 10.1016/0378-1119(92)90296-2] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
25
Barany F, Zebala J. Correlation between insertion mutant activities and amino acid sequence identities of the TaqI and TthHB8 restriction endonucleases. Gene 1992;112:13-20. [PMID: 1551592 DOI: 10.1016/0378-1119(92)90297-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
26
Szybalski W, Kim SC, Hasan N, Podhajska AJ. Class-IIS restriction enzymes--a review. Gene 1991;100:13-26. [PMID: 2055464 DOI: 10.1016/0378-1119(91)90345-c] [Citation(s) in RCA: 187] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
27
A family of regulatory genes associated with type II restriction-modification systems. J Bacteriol 1991;173:1367-75. [PMID: 1995588 PMCID: PMC207272 DOI: 10.1128/jb.173.4.1367-1375.1991] [Citation(s) in RCA: 124] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
28
Karyagina AS, Lunin VG, Nikolskaya II. Characterization of the genetic determinants of SsoII-restriction endonuclease and modification methyltransferase. Gene 1990;87:113-8. [PMID: 2185134 DOI: 10.1016/0378-1119(90)90501-h] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
29
Kaszubska W, Aiken C, O'Connor CD, Gumport RI. Purification, cloning and sequence analysis of RsrI DNA methyltransferase: lack of homology between two enzymes, RsrI and EcoRI, that methylate the same nucleotide in identical recognition sequences. Nucleic Acids Res 1989;17:10403-25. [PMID: 2690017 PMCID: PMC335309 DOI: 10.1093/nar/17.24.10403] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
30
Stephenson FH, Ballard BT, Boyer HW, Rosenberg JM, Greene PJ. Comparison of the nucleotide and amino acid sequences of the RsrI and EcoRI restriction endonucleases. Gene 1989;85:1-13. [PMID: 2695392 DOI: 10.1016/0378-1119(89)90458-7] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
31
Tao T, Walter J, Brennan KJ, Cotterman MM, Blumenthal RM. Sequence, internal homology and high-level expression of the gene for a DNA-(cytosine N4)-methyltransferase, M.Pvu II. Nucleic Acids Res 1989;17:4161-75. [PMID: 2662138 PMCID: PMC317926 DOI: 10.1093/nar/17.11.4161] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
32
Lunnen KD, Barsomian JM, Camp RR, Card CO, Chen SZ, Croft R, Looney MC, Meda MM, Moran LS, Nwankwo DO. Cloning type-II restriction and modification genes. Gene 1988;74:25-32. [PMID: 3074013 DOI: 10.1016/0378-1119(88)90242-9] [Citation(s) in RCA: 74] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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