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Morisse CG, McInroy AR, Anderson C, Mitchell CJ, Parker SF, Lennon D. Structure/activity relationships applied to the hydrogenation of α,β-unsaturated carbonyls: The hydrogenation of 3-butyne-2-one over alumina-supported palladium catalysts. Catal Today 2017. [DOI: 10.1016/j.cattod.2016.02.028] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Parker SF, Silverwood IP, Hamilton NG, Lennon D. Structural and spectroscopic characterisation of C4 oxygenates relevant to structure/activity relationships of the hydrogenation of α,β-unsaturated carbonyls. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2016; 153:289-297. [PMID: 26318704 DOI: 10.1016/j.saa.2015.08.034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Revised: 08/11/2015] [Accepted: 08/16/2015] [Indexed: 06/04/2023]
Abstract
In the present work, we have investigated the conformational isomerism and calculated the vibrational spectra of the C4 oxygenates: 3-butyne-2-one, 3-butene-2-one, 2-butanone and 2-butanol using density functional theory. The calculations are validated by comparison to structural data where available and new, experimental inelastic neutron scattering and infrared spectra of the compounds. We find that for 3-butene-2-one and 2-butanol the spectra show clear evidence for the presence of conformational isomerism and this is supported by the calculations. Complete vibrational assignments for all four molecules are provided and this provides the essential information needed to generate structure/activity relationships for the sequential catalytic hydrogenation of 3-butyne-2-one to 2-butanol.
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Affiliation(s)
- Stewart F Parker
- ISIS Facility, STFC Rutherford Appleton Laboratory, Chilton, Didcot, Oxon OX11 0QX, UK.
| | - Ian P Silverwood
- School of Chemistry, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, Scotland, UK
| | - Neil G Hamilton
- School of Chemistry, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, Scotland, UK
| | - David Lennon
- School of Chemistry, Joseph Black Building, University of Glasgow, Glasgow G12 8QQ, Scotland, UK
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Langley CH, Lii JH, Allinger NL. Molecular mechanics calculations on carbonyl compounds. II. Open-chain ketones. J Comput Chem 2001. [DOI: 10.1002/jcc.1099] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Mathew M, Fowler BO, Breuer E, Golomb G, Alferiev IS, Eidelman N. Synthesis, Characterization, and Crystal Structure of Dicalcium Glutarylbis(phosphonate) Dihydrate: A Covalently Pillared Layer Structure with the Potential for Epitaxial Growth on Hydroxyapatite. Inorg Chem 1998; 37:6485-6494. [PMID: 11670769 DOI: 10.1021/ic980374h] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A new bis(acylphosphonate), glutarylbis(phosphonate) (GlBP), was synthesized. Sodium and calcium salts of the GlBP, disodium dihydrogen glutarylbis(phosphonate), NaHO(3)PC(O)(CH(2))(3)C(O)PO(3)HNa, and dicalcium glutarylbis(phosphonate) dihydrate, Ca(2)[O(3)PC(O)(CH(2))(3)C(O)PO(3)].2H(2)O, were prepared and characterized by chemical analyses, thermogravimetry and Fourier transform infrared spectroscopy (FTIR). The crystal structure of the Ca salt was determined by single-crystal X-ray diffraction. The crystals are orthorhombic with a = 10.970(1) Å, b = 23.694(2) Å, c = 5.580(1) Å, space group Pnma, and Z = 4. This study provides the first example of a structure of a calcium complex involving a nongeminal bis(phosphonate). The structure can be described in terms of a covalently pillared layer-type arrangement of neutral Ca-GlBP-Ca units along the b-axis. Each oxygen atom of the phosphonate group is bonded to a different Ca ion, and each Ca in turn is linked to three phosphonate groups. The Ca octahedra and the phosphonate tetrahedra form a two-dimensional polar sheet perpendicular to the b-axis. The chelate bonds involving the keto groups appear to be important links in the stabilization of the structure and, in turn, to the biological activity of bis(acylphosphonates). A near-perfect lattice match, found between the Ca phosphonate layer and the major crystal faces of hydroxyapatite, indicates that epitaxial growth or incorporation of GlBP can occur on the apatitic surface which may be the mode of action in the inhibition of calcification.
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Affiliation(s)
- Mathai Mathew
- Paffenbarger Research Center, American Dental Association Health Foundation, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, National Institute of Dental Research's Craniofacial and Skeletal Diseases Branch Research Associate Program at the National Institute of Standards and Technology, Gaithersburg, Maryland 20899, Department of Pharmaceutical Chemistry, School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem, Israel, Department of Pharmaceutics, School of Pharmacy, The Hebrew University of Jerusalem, Jerusalem, Israel, and Department of Pediatrics, School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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Gundertofte K, Liljefors T, Norrby PO, Pettersson I. A comparison of conformational energies calculated by several molecular mechanics methods. J Comput Chem 1996. [DOI: 10.1002/(sici)1096-987x(199603)17:4<429::aid-jcc5>3.0.co;2-w] [Citation(s) in RCA: 125] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Gas-phase structure and conformation of diethyl ketone studied by molecular orbital constrained electron diffraction. J Mol Struct 1996. [DOI: 10.1016/0022-2860(95)09081-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Gundertofte K, Palm J, Pettersson I, Stamvik A. A comparison of conformational energies calculated by molecular mechanics (MM2(85), Sybyl 5.1, Sybyl 5.21, and ChemX) and semiempirical (AM1 and PM3) methods. J Comput Chem 1991. [DOI: 10.1002/jcc.540120209] [Citation(s) in RCA: 50] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Wiberg KB, Murcko MA. Barriers to rotation adjacent to double bonds. 4. Effect of basis set on structures, and of electron correlation on relative energies. J Comput Chem 1988. [DOI: 10.1002/jcc.540090507] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Minimum-energy reaction path extended-BEBO study of (1,2)-hydrogen migration in trimethylene biradical. Chem Phys Lett 1988. [DOI: 10.1016/0009-2614(88)87474-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Rotational isomerism and solvent effect on infrared intensities of ν(CO) stretching band in methyl alkyl ketones. J Mol Struct 1986. [DOI: 10.1016/0022-2860(86)85104-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Valko L, Šimon P. Extension of BEBO method for the estimation of activation energies of intraradical 1,2-hydrogen shift reactions. Chem Phys 1985. [DOI: 10.1016/0301-0104(85)80185-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Carbonyles tres decales par rapport a l'eclipse dans les aldehydes et les cetones aliphatiques satures: analyse conformationnelle theorique. J Mol Struct 1978. [DOI: 10.1016/0022-2860(78)87016-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Inagaki F, Sakakibara M, Harada I, Shimanouchi T. Infrared and Raman Spectra and Rotational Isomerism of 1,4-Pentadiene. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1975. [DOI: 10.1246/bcsj.48.3557] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Henriksen L, Nielsen P, Borch G, Klaboe P. Tentative assignment of fundamental vibrations of thio- and selenocarboxylates—VI. 1,3-dithiolan-2-ylidene malononitrile. ACTA ACUST UNITED AC 1975. [DOI: 10.1016/0584-8539(75)80030-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Moravie RM, Corset J. Spectres de vibration et conformations du propionate et de l'isobutyrate de méthyle. J Mol Struct 1975. [DOI: 10.1016/0022-2860(75)85068-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Buric Z, Krueger P. Vibrational analysis of diethyl ketone and its deuterated analogues. ACTA ACUST UNITED AC 1974. [DOI: 10.1016/0584-8539(74)80059-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Crowder G, Smyrl N. Vibrational assignment and rotational isomerism of 2-chloro-1-butene and 2-bromo-1-butene. J Mol Struct 1971. [DOI: 10.1016/0022-2860(71)85058-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Shimanouchi T, Abe Y, Alaki Y. Stable Conformations of 1,4-Polybutadiene Chains and Their Model Compound Molecules. Polym J 1971. [DOI: 10.1295/polymj.2.199] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Durig JR, Hannum SE. Vibrational Spectra and Structure of Oxalyl Chloride in the Crystalline and Fluid States. J Chem Phys 1970. [DOI: 10.1063/1.1672911] [Citation(s) in RCA: 50] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Abe M(M, Kuchitsu K, Shimanouchi T. Electron-diffraction study of rotational isomerism of methyl ethyl ketone. J Mol Struct 1969. [DOI: 10.1016/0022-2860(69)80059-1] [Citation(s) in RCA: 32] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Ito H, Nogata Y, Matsuzaki S, Kuboyama A. Vacuum-ultraviolet Absorption Spectra of Aliphatic Ketones. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1969. [DOI: 10.1246/bcsj.42.2453] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Itoh K, Nakahara T, Shimanouchi T, Oya M, Uno K, Iwakura Y. Far-infrared spectra of polyalanines with alpha-helical and beta-form structures. Biopolymers 1968; 6:1759-66. [PMID: 5704345 DOI: 10.1002/bip.1968.360061211] [Citation(s) in RCA: 73] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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