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Zhou F, Ding K, Zhou Y, Liu Y, Liu X, Zhao F, Wu Y, Zhang X, Tan Q, Xu F, Tan W, Xiao Y, Zhao S, Tao H. Colocalization Strategy Unveils an Underside Binding Site in the Transmembrane Domain of Smoothened Receptor. J Med Chem 2019; 62:9983-9989. [PMID: 31408335 DOI: 10.1021/acs.jmedchem.9b00283] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
We unveiled an underside binding site on smoothened receptor (SMO) by a colocalization strategy using two structurally complementary photoaffinity probes derived from a known ligand Allo-1. Docking study and structural dissection identified key interactions within the site, including hydrogen bonding, π-π interactions, and hydrophobic interactions between Allo-1 and its contacting residues. Taken together, our results reveal the molecular base of Allo-1 binding and provide a basis for the design of new-generation ligands to overcome drug resistance.
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Affiliation(s)
- Fang Zhou
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China.,Shanghai Institute of Materia Medica , Chinese Academy of Sciences , 555 Zuchongzhi Road, Building 3, Room 426 , Shanghai 201203 , China.,University of Chinese Academy of Sciences , No. 19A, Yuquan Road , Beijing 100049 , China.,School of Life Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Kang Ding
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China.,Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology , Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai 200031 , China.,University of Chinese Academy of Sciences , No. 19A, Yuquan Road , Beijing 100049 , China.,School of Life Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Yiqing Zhou
- CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology , Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai 200032 , China.,School of Biotechnology and Food Engineering , Changshu Institute of Technology , Suzhou , Jiangsu 215500 , China
| | - Yang Liu
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
| | - Xiaoyan Liu
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
| | - Fei Zhao
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
| | - Yiran Wu
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
| | - Xianjun Zhang
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China.,University of Chinese Academy of Sciences , No. 19A, Yuquan Road , Beijing 100049 , China.,School of Life Science and Technology , ShanghaiTech University , Shanghai 201210 , China.,Institute of Biochemistry and Cell Biology , Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai 200031 , China
| | - Qiwen Tan
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
| | - Fei Xu
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China.,School of Life Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Wenfu Tan
- Department of Pharmacology, School of Pharmacy , Fudan University , Shanghai 201203 , China
| | - Youli Xiao
- CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology , Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences , Shanghai 200032 , China.,University of Chinese Academy of Sciences , No. 19A, Yuquan Road , Beijing 100049 , China
| | - Suwen Zhao
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China.,School of Life Science and Technology , ShanghaiTech University , Shanghai 201210 , China
| | - Houchao Tao
- iHuman Institute , ShanghaiTech University , Ren Building, 393 Middle Huaxia Road , Pudong New District, Shanghai 201210 , China
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