1
|
Kalikadien AV, Valsecchi C, van Putten R, Maes T, Muuronen M, Dyubankova N, Lefort L, Pidko EA. Probing machine learning models based on high throughput experimentation data for the discovery of asymmetric hydrogenation catalysts. Chem Sci 2024; 15:13618-13630. [PMID: 39211503 PMCID: PMC11352728 DOI: 10.1039/d4sc03647f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 07/15/2024] [Indexed: 09/04/2024] Open
Abstract
Enantioselective hydrogenation of olefins by Rh-based chiral catalysts has been extensively studied for more than 50 years. Naively, one would expect that everything about this transformation is known and that selecting a catalyst that induces the desired reactivity or selectivity is a trivial task. Nonetheless, ligand engineering or selection for any new prochiral olefin remains an empirical trial-error exercise. In this study, we investigated whether machine learning techniques could be used to accelerate the identification of the most efficient chiral ligand. For this purpose, we used high throughput experimentation to build a large dataset consisting of results for Rh-catalyzed asymmetric olefin hydrogenation, specially designed for applications in machine learning. We showcased its alignment with existing literature while addressing observed discrepancies. Additionally, a computational framework for the automated and reproducible quantum-chemistry based featurization of catalyst structures was created. Together with less computationally demanding representations, these descriptors were fed into our machine learning pipeline for both out-of-domain and in-domain prediction tasks of selectivity and reactivity. For out-of-domain purposes, our models provided limited efficacy. It was found that even the most expensive descriptors do not impart significant meaning to the model predictions. The in-domain application, while partly successful for predictions of conversion, emphasizes the need for evaluating the cost-benefit ratio of computationally intensive descriptors and for tailored descriptor design. Challenges persist in predicting enantioselectivity, calling for caution in interpreting results from small datasets. Our insights underscore the importance of dataset diversity with broad substrate inclusion and suggest that mechanistic considerations could improve the accuracy of statistical models.
Collapse
Affiliation(s)
- Adarsh V Kalikadien
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology Van der Maasweg 9, 2629 HZ Delft The Netherlands
| | - Cecile Valsecchi
- Discovery, Product Development and Supply, Janssen Cilag S.p.A. Viale Fulvio Testi, 280/6 20126 Milano Italy
| | - Robbert van Putten
- Discovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium
| | - Tor Maes
- Discovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium
| | - Mikko Muuronen
- Discovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium
| | - Natalia Dyubankova
- Discovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium
| | - Laurent Lefort
- Discovery, Product Development and Supply, Janssen Pharmaceutica N.V. Turnhoutseweg 30 2340 Beerse Belgium
| | - Evgeny A Pidko
- Inorganic Systems Engineering, Department of Chemical Engineering, Faculty of Applied Sciences, Delft University of Technology Van der Maasweg 9, 2629 HZ Delft The Netherlands
| |
Collapse
|
2
|
Dupont J, Leal BC, Lozano P, Monteiro AL, Migowski P, Scholten JD. Ionic Liquids in Metal, Photo-, Electro-, and (Bio) Catalysis. Chem Rev 2024; 124:5227-5420. [PMID: 38661578 DOI: 10.1021/acs.chemrev.3c00379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
Ionic liquids (ILs) have unique physicochemical properties that make them advantageous for catalysis, such as low vapor pressure, non-flammability, high thermal and chemical stabilities, and the ability to enhance the activity and stability of (bio)catalysts. ILs can improve the efficiency, selectivity, and sustainability of bio(transformations) by acting as activators of enzymes, selectively dissolving substrates and products, and reducing toxicity. They can also be recycled and reused multiple times without losing their effectiveness. ILs based on imidazolium cation are preferred for structural organization aspects, with a semiorganized layer surrounding the catalyst. ILs act as a container, providing a confined space that allows modulation of electronic and geometric effects, miscibility of reactants and products, and residence time of species. ILs can stabilize ionic and radical species and control the catalytic activity of dynamic processes. Supported IL phase (SILP) derivatives and polymeric ILs (PILs) are good options for molecular engineering of greener catalytic processes. The major factors governing metal, photo-, electro-, and biocatalysts in ILs are discussed in detail based on the vast literature available over the past two and a half decades. Catalytic reactions, ranging from hydrogenation and cross-coupling to oxidations, promoted by homogeneous and heterogeneous catalysts in both single and multiphase conditions, are extensively reviewed and discussed considering the knowledge accumulated until now.
Collapse
Affiliation(s)
- Jairton Dupont
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
- Departamento de Bioquímica y Biología Molecular B e Inmunología, Facultad de Química, Universidad de Murcia, P.O. Box 4021, E-30100 Murcia, Spain
| | - Bárbara C Leal
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Pedro Lozano
- Departamento de Bioquímica y Biología Molecular B e Inmunología, Facultad de Química, Universidad de Murcia, P.O. Box 4021, E-30100 Murcia, Spain
| | - Adriano L Monteiro
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Pedro Migowski
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| | - Jackson D Scholten
- Institute of Chemistry - Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Bento Gonçalves, 9500, Porto Alegre 91501-970 RS, Brasil
| |
Collapse
|
3
|
Faiges J, Biosca M, Pericàs MA, Besora M, Pàmies O, Diéguez M. Unlocking the Asymmetric Hydrogenation of Tetrasubstituted Acyclic Enones. Angew Chem Int Ed Engl 2024; 63:e202315872. [PMID: 38093613 DOI: 10.1002/anie.202315872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Indexed: 12/30/2023]
Abstract
Asymmetric hydrogenation (AH) of tetrasubstituted olefins generating two stereocenters is still an open topic. There are only a few reports on the AH of tetrasubstituted olefins with conjugated functional groups, while this process can create useful intermediates for the subsequent elaboration of relevant end products. Most of the tetrasubstituted olefins successfully submitted to AH belong to a small number of functional classes; remarkably, the AH of tetrasubstituted acyclic enones still represents an unsolved challenge. Herein, we disclose a class of air-stable Ir-P,N catalysts, prepared in three steps from commercially available amino alcohols, that can hydrogenate, in minutes, a wide range of electronically and sterically diverse acyclic tetrasubstituted enones (including exocyclic ones) with high yields and high enantioselectivities. The factors responsible for the excellent selectivities were elucidated by combining deuterogenation experiments and theoretical calculations. The calculations indicated that the reduction follows an IrI /IrIII mechanism, in which enantioselectivity is controlled in the first migratory insertion of the hydride to the most electrophilic olefinic Cβ and the formation of the hydrogenated product via reductive elimination takes place prior to the coordination of dihydrogen and the subsequent oxidative addition. The potential of the new catalytic systems is demonstrated by the derivatization of hydrogenation products.
Collapse
Affiliation(s)
- Jorge Faiges
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| | - Maria Biosca
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| | - Miquel A Pericàs
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| | - Maria Besora
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| | - Oscar Pàmies
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| | - Montserrat Diéguez
- Universitat Rovira i Virgili, Departament de Química Física i Inorgànica, C/Marcel⋅lí Domingo, 1, 43007, Tarragona, Spain
| |
Collapse
|
4
|
Ivanytsya MO, Subotin VV, Gavrilenko KS, Ryabukhin SV, Volochnyuk DM, Kolotilov SV. Advances and Challenges in Development of Transition Metal Catalysts for Heterogeneous Hydrogenation of Organic Compounds. CHEM REC 2024; 24:e202300300. [PMID: 38063808 DOI: 10.1002/tcr.202300300] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 11/19/2023] [Indexed: 02/10/2024]
Abstract
Actual problems of development of catalysts for hydrogenation of heterocyclic compounds by hydrogen are summarized and discussed. The scope of review covers composites of nanoparticles of platinum group metals and 3d metals for heterogeneous catalytic processes. Such problems include increase of catalyst activity, which is important for reduction of precious metals content; development of new catalytic systems which do not contain metals of platinum group or contain cheaper analogues of Pd; control of factors which make influence on the selectivity of the catalysts; achievement of high reproducibility of the catalyst's performance and quality control of the catalysts. Own results of the authors are also summarized and described. The catalysts were prepared by decomposition of Pd0 and Ni0 complexes, pyrolysis of Ni2+ and Co2+ complexes deposited on aerosil and reduction of Ni2+ in pores of porous support in situ. The developed catalysts were used for hydrogenation of multigram batches of heterocyclic compounds.
Collapse
Affiliation(s)
- Mykyta O Ivanytsya
- L. V. Pisarzhevskii Institute of Physical Chemistry of the National Academy of Sciences of Ukraine, Prosp. Nauky 31, 03028, Kyiv, Ukraine
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
- Institute of High Technologies, Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, 01601, Kyiv, Ukraine
| | - Vladyslav V Subotin
- L. V. Pisarzhevskii Institute of Physical Chemistry of the National Academy of Sciences of Ukraine, Prosp. Nauky 31, 03028, Kyiv, Ukraine
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
| | - Konstantin S Gavrilenko
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
- Chemical Department, Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, 01601, Kyiv, Ukraine
| | - Serhiy V Ryabukhin
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
- Institute of High Technologies, Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, 01601, Kyiv, Ukraine
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Murmanska Street 5, 02660, Kyiv, Ukraine
| | - Dmytro M Volochnyuk
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
- Institute of High Technologies, Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, 01601, Kyiv, Ukraine
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, Murmanska Street 5, 02660, Kyiv, Ukraine
| | - Sergey V Kolotilov
- L. V. Pisarzhevskii Institute of Physical Chemistry of the National Academy of Sciences of Ukraine, Prosp. Nauky 31, 03028, Kyiv, Ukraine
- Enamine Ltd., 78 Winston Churchill St., 02094, Kyiv, Ukraine
- Institute of High Technologies, Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, 01601, Kyiv, Ukraine
| |
Collapse
|