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Ertuğrul Uygun HD, Odaci D. Impedimetric Single Carbon Fiber Electrode for Ultrasensitive Detection of Staphylococcus aureus Pathogen DNAs in Breast Milk by CRISPR Technology. ACS OMEGA 2024; 9:25172-25180. [PMID: 38882121 PMCID: PMC11170623 DOI: 10.1021/acsomega.4c02738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/15/2024] [Accepted: 05/17/2024] [Indexed: 06/18/2024]
Abstract
This study introduces a novel biosensing approach for the detection of pathogen DNA in breast milk utilizing single carbon fiber electrodes (SCFE) enhanced with MXene nanomaterial layers. The primary innovation lies in the modification of SCFE with MXenes to increase the electrode's surface area, followed by surface activation for the immobilization of dCas9-sgRNA complexes. This modification aims to leverage the unique properties of MXenes and the selective binding capability of the CRISPR technology for efficient and specific pathogen detection. Electrochemical impedance spectroscopy (EIS) and scanning electron microscopy (SEM) analyses were employed to characterize the electrode modifications and the immobilization process, demonstrating the successful enhancement of biosensor performance. This study further optimized the chronoimpedimetric detection method to achieve rapid, sensitive, and selective detection of Staphylococcus aureus (SAu) DNA in breast milk, with a notable detection time of 60 s in real samples. The biosensor demonstrated high selectivity and sensitivity, with a linear detection range between 50 and 6000 fM and a limit of detection (LOD) of 14.5 fM. The reproducibility and stability of the biosensor were also confirmed through multiple tests, showing promising potential for clinical and public health applications.
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Affiliation(s)
- Hilmiye Deniz Ertuğrul Uygun
- Center for Fabrication and Application of Electronic Materials, Dokuz Eylül University, Buca, İzmir 35220, Türkiye
- Faculty of Science, Department of Biochemistry, Ege University, Bornova, İzmir 35040, Türkiye
| | - Dilek Odaci
- Faculty of Science, Department of Biochemistry, Ege University, Bornova, İzmir 35040, Türkiye
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Sitkov N, Ryabko A, Moshnikov V, Aleshin A, Kaplun D, Zimina T. Hybrid Impedimetric Biosensors for Express Protein Markers Detection. MICROMACHINES 2024; 15:181. [PMID: 38398911 PMCID: PMC10890403 DOI: 10.3390/mi15020181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 01/22/2024] [Accepted: 01/23/2024] [Indexed: 02/25/2024]
Abstract
Impedimetric biosensors represent a powerful and promising tool for studying and monitoring biological processes associated with proteins and can contribute to the development of new approaches in the diagnosis and treatment of diseases. The basic principles, analytical methods, and applications of hybrid impedimetric biosensors for express protein detection in biological fluids are described. The advantages of this type of biosensors, such as simplicity and speed of operation, sensitivity and selectivity of analysis, cost-effectiveness, and an ability to be integrated into hybrid microfluidic systems, are demonstrated. Current challenges and development prospects in this area are analyzed. They include (a) the selection of materials for electrodes and formation of nanostructures on their surface; (b) the development of efficient methods for biorecognition elements' deposition on the electrodes' surface, providing the specificity and sensitivity of biosensing; (c) the reducing of nonspecific binding and interference, which could affect specificity; (d) adapting biosensors to real samples and conditions of operation; (e) expanding the range of detected proteins; and, finally, (f) the development of biosensor integration into large microanalytical system technologies. This review could be useful for researchers working in the field of impedimetric biosensors for protein detection, as well as for those interested in the application of this type of biosensor in biomedical diagnostics.
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Affiliation(s)
- Nikita Sitkov
- Department of Micro and Nanoelectronics, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia; (V.M.); (T.Z.)
- Engineering Centre for Microtechnology and Diagnostics, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia
| | - Andrey Ryabko
- Laboratory of Nonequilibrium Processes in Semiconductors, Ioffe Institute, 26 Politekhnicheskaya, 194021 Saint Petersburg, Russia;
| | - Vyacheslav Moshnikov
- Department of Micro and Nanoelectronics, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia; (V.M.); (T.Z.)
| | - Andrey Aleshin
- Laboratory of Nonequilibrium Processes in Semiconductors, Ioffe Institute, 26 Politekhnicheskaya, 194021 Saint Petersburg, Russia;
| | - Dmitry Kaplun
- Artificial Intelligence Research Institute, China University of Mining and Technology, 1 Daxue Road, Xuzhou 221116, China;
- Department of Automation and Control Processes, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia
| | - Tatiana Zimina
- Department of Micro and Nanoelectronics, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia; (V.M.); (T.Z.)
- Engineering Centre for Microtechnology and Diagnostics, Saint Petersburg Electrotechnical University “LETI”, 197022 Saint Petersburg, Russia
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A review on structural aspects and applications of PAMAM dendrimers in analytical chemistry: Frontiers from separation sciences to chemical sensor technologies. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Fedacı C, Ertuğrul Uygun HD, Uygun ZO, Akçay Y. A novel biorecognition receptor Citropin-A modified impedimetric biosensor for detection of LNCaP prostate cancer cells. Anal Biochem 2022; 652:114772. [PMID: 35688260 DOI: 10.1016/j.ab.2022.114772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 05/26/2022] [Accepted: 05/31/2022] [Indexed: 11/19/2022]
Abstract
In this study, Citropin-A (Cit-A) as a biorecognition receptor was used for the first time to develop electrochemical impedance spectroscopy (EIS) based biosensor for the detection of Lymph Node Carcinoma of the Prostate (LNCaP) cancer cells. The biosensor was engineered by modification of a gold electrode (AuE) with cysteamine (Cys), Poliamidoamin (PAMAM (G4)) dendrimers, avidin, and biotinylated Cit-A, respectively. The detection time of the LNCaP cells was determined as 300 s by chronoimpedance (CI). Chronoimpedance also provided an exact detection time to avoid non-specific adsorptions. The biosensor showed good linearity between 1500 cells/L and 12000 cells/L, limit of detection (LOD), and limit of quantification (LOQ) values were 518 cells/L and 1570 cells/L, respectively.
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Affiliation(s)
- Cemrehan Fedacı
- Ege University, Faculty of Medicine, Department of Medical Biochemistry, Bornova, İzmir, Turkey
| | | | - Zihni Onur Uygun
- Kafkas University, Faculty of Medicine, Department of Medical Biochemistry, Kars, Turkey.
| | - Yasemin Akçay
- Ege University, Faculty of Medicine, Department of Medical Biochemistry, Bornova, İzmir, Turkey
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ERTUĞRUL UYGUN HD. Impedimetric CRISPR-dCas9 Based Biosensor System for Sickle Cell Anemia Mutation. JOURNAL OF THE TURKISH CHEMICAL SOCIETY, SECTION A: CHEMISTRY 2022. [DOI: 10.18596/jotcsa.1033237] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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UYGUN ZO. IgG'nin tayini için kapasitif bir biyosensör geliştirilmesi. EGE TIP DERGISI 2022. [DOI: 10.19161/etd.1085550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Chen TW, Kalimuthu P, Veerakumar P, Lin KC, Chen SM, Ramachandran R, Mariyappan V, Chitra S. Recent Developments in Carbon-Based Nanocomposites for Fuel Cell Applications: A Review. Molecules 2022; 27:761. [PMID: 35164025 PMCID: PMC8915178 DOI: 10.3390/molecules27030761] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 01/15/2022] [Accepted: 01/19/2022] [Indexed: 11/16/2022] Open
Abstract
Carbon-based nanocomposites have developed as the most promising and emerging materials in nanoscience and technology during the last several years. They are microscopic materials that range in size from 1 to 100 nanometers. They may be distinguished from bulk materials by their size, shape, increased surface-to-volume ratio, and unique physical and chemical characteristics. Carbon nanocomposite matrixes are often created by combining more than two distinct solid phase types. The nanocomposites that were constructed exhibit unique properties, such as significantly enhanced toughness, mechanical strength, and thermal/electrochemical conductivity. As a result of these advantages, nanocomposites have been used in a variety of applications, including catalysts, electrochemical sensors, biosensors, and energy storage devices, among others. This study focuses on the usage of several forms of carbon nanomaterials, such as carbon aerogels, carbon nanofibers, graphene, carbon nanotubes, and fullerenes, in the development of hydrogen fuel cells. These fuel cells have been successfully employed in numerous commercial sectors in recent years, notably in the car industry, due to their cost-effectiveness, eco-friendliness, and long-cyclic durability. Further; we discuss the principles, reaction mechanisms, and cyclic stability of the fuel cells and also new strategies and future challenges related to the development of viable fuel cells.
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Affiliation(s)
- Tse-Wei Chen
- Department of Materials, Imperial College London, London SW7 2AZ, UK;
| | - Palraj Kalimuthu
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane 4072, Australia;
| | - Pitchaimani Veerakumar
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan;
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - King-Chuen Lin
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan;
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 10617, Taiwan
| | - Shen-Ming Chen
- Electroanalysis and Bio-electrochemistry Laboratory, Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei 106, Taiwan;
| | - Rasu Ramachandran
- Department of Chemistry, The Madura College, Vidhya Nagar, T.P.K. Road, Madurai 625011, India
| | - Vinitha Mariyappan
- Electroanalysis and Bio-electrochemistry Laboratory, Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei 106, Taiwan;
| | - Selvam Chitra
- Department of Chemistry, Alagappa Government Arts College, Karaikudi 630003, India;
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Mumcu MU, Ertuğrul Uygun HD, Uygun ZO. Human Papilloma Virus‐11 DNA Detection by Graphene‐PAMAM Modified Impedimetric CRISPR‐dCas9 Biosensor. ELECTROANAL 2021. [DOI: 10.1002/elan.202100536] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Hilmiye Deniz Ertuğrul Uygun
- Dokuz Eylül University Center for Fabrication and Application of Electronic Materials, Tınaztepe, Buca 35390 İzmir Turkey
| | - Zihni Onur Uygun
- Kafkas University Faculty of Medicine, Department of Medical Biochemistry 36100 Kars Turkey
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Speranza G. Carbon Nanomaterials: Synthesis, Functionalization and Sensing Applications. NANOMATERIALS (BASEL, SWITZERLAND) 2021; 11:967. [PMID: 33918769 PMCID: PMC8069879 DOI: 10.3390/nano11040967] [Citation(s) in RCA: 80] [Impact Index Per Article: 26.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 03/16/2021] [Accepted: 03/17/2021] [Indexed: 02/07/2023]
Abstract
Recent advances in nanomaterial design and synthesis has resulted in robust sensing systems that display superior analytical performance. The use of nanomaterials within sensors has accelerated new routes and opportunities for the detection of analytes or target molecules. Among others, carbon-based sensors have reported biocompatibility, better sensitivity, better selectivity and lower limits of detection to reveal a wide range of organic and inorganic molecules. Carbon nanomaterials are among the most extensively studied materials because of their unique properties spanning from the high specific surface area, high carrier mobility, high electrical conductivity, flexibility, and optical transparency fostering their use in sensing applications. In this paper, a comprehensive review has been made to cover recent developments in the field of carbon-based nanomaterials for sensing applications. The review describes nanomaterials like fullerenes, carbon onions, carbon quantum dots, nanodiamonds, carbon nanotubes, and graphene. Synthesis of these nanostructures has been discussed along with their functionalization methods. The recent application of all these nanomaterials in sensing applications has been highlighted for the principal applicative field and the future prospects and possibilities have been outlined.
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Affiliation(s)
- Giorgio Speranza
- CMM—FBK, v. Sommarive 18, 38123 Trento, Italy;
- IFN—CNR, CSMFO Lab., via alla Cascata 56/C Povo, 38123 Trento, Italy
- Department of Industrial Engineering, University of Trento, v. Sommarive 9, 38123 Trento, Italy
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Uygun ZO, Yeniay L, Gi Rgi N Sağın F. CRISPR-dCas9 powered impedimetric biosensor for label-free detection of circulating tumor DNAs. Anal Chim Acta 2020; 1121:35-41. [PMID: 32493587 DOI: 10.1016/j.aca.2020.04.009] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2020] [Revised: 03/29/2020] [Accepted: 04/02/2020] [Indexed: 12/20/2022]
Abstract
Label-free biosensors which can be integrated into lab-on-a-chip platforms have the advantage of using small volumes for rapid and inexpensive measurements contrary to label-based technologies which are often more costly and time-consuming. In this study, graphene oxide screen printed electrodes (GPHOXE) were modified by deactivated Cas9 (dCas9) proteins and synthetic guide RNA (sgRNA) as the biorecognition receptor for label-free detection of circulating tumor DNAs (ctDNA). This was achieved by detection of a tumor related mutation (PIK3CA exon 9 mutation) via sequence-specific recognition followed by electrochemical impedance spectroscopy (EIS) analysis. The biosensor showed high specificity as there was no impedance signal for other ctDNA sequences, even the single nucleotide mismatch. dCas9-sgRNA modified biosensor demonstrated linear detection limits between 2 and 20 nM for 120 bp ctDNA's in 40 s. The calibration curve showed good linearity, LOD was calculated as 0.65 nM and LOQ was calculated as 1.92 nM. Selectivity and repeatability studies were carried out in real blood samples and the recovery was higher than 96%. In conclusion, dCas9-sgRNA was effectively immobilized and optimized on GPHOXE as the selective biorecognition receptor of this ultrafast impedimetric biosensor. The CRISPR-dCas9 powered impedimetric system showed good selectivity, high repeatability and good recovery properties. This is the first literature to report the use of CRISPR/Cas technology as a label-free tool that can be used in an impedimetric system for detection of ctDNA's.
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Affiliation(s)
- Zihni Onur Uygun
- Ege University, Faculty of Medicine, Department of Medical Biochemistry, Bornova, 35100, İzmir, Turkey.
| | - Levent Yeniay
- Ege University, Faculty of Medicine, Department of General Surgery, Bornova, 35100, İzmir, Turkey
| | - Ferhan Gi Rgi N Sağın
- Ege University, Faculty of Medicine, Department of Medical Biochemistry, Bornova, 35100, İzmir, Turkey
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Nano-carbons in biosensor applications: an overview of carbon nanotubes (CNTs) and fullerenes (C60). SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-2404-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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12
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Ertuğrul Uygun HD, Uygun ZO, Canbay E, Gi̇rgi̇n Sağın F, Sezer E. Non-invasive cortisol detection in saliva by using molecularly cortisol imprinted fullerene-acrylamide modified screen printed electrodes. Talanta 2020; 206:120225. [DOI: 10.1016/j.talanta.2019.120225] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 07/11/2019] [Accepted: 08/02/2019] [Indexed: 11/15/2022]
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Onur Uygun Z, Ertuğrul Uygun HD. A Novel Chronoimpedimetric Glucose Sensor in Real Blood Samples Modified by Glucose‐imprinted Pyrrole‐Aminophenylboronic Acid Modified Screen Printed Electrode. ELECTROANAL 2019. [DOI: 10.1002/elan.201900537] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Zihni Onur Uygun
- Ege University Faculty of Medicine Medical Biochemistry Department Bornova 35100, İzmir Turkey
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Magnetic multiwalled carbon nanotubes as nanocarrier tags for sensitive determination of fetuin in saliva. Biosens Bioelectron 2018; 113:88-94. [DOI: 10.1016/j.bios.2018.04.056] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2018] [Revised: 04/26/2018] [Accepted: 04/26/2018] [Indexed: 11/23/2022]
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Nagpal K, Mohan A, Thakur S, Kumar P. Dendritic platforms for biomimicry and biotechnological applications. ARTIFICIAL CELLS NANOMEDICINE AND BIOTECHNOLOGY 2018; 46:861-875. [DOI: 10.1080/21691401.2018.1438451] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Kalpana Nagpal
- Amity Institute of Pharmacy, Amity University, Noida, India
| | - Anand Mohan
- Department of Biotechnology, Lovely Professional University, Jalandhar, India
| | - Sourav Thakur
- Department of Pharmacy, Lovely Professional University, Jalandhar, India
| | - Pradeep Kumar
- Department of Pharmacy and Pharmachology, Faculty of Health Sciences, School of Therapeutic Sciences, University of the Witwatersrand, Johannesburg, South Africa
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